YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|197288027, gi...
Organism:	Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480
Length:	135 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|197288027, gi....

Description	E-value	Query Range	Subject Range
gi\|77961125 - gi\|77961125\|ref\|ZP_00824971.1\| COG1516: Flagellin-specific chaperone FliS [Yersinia mollaretii ATCC ...	167.0	[0..1]	[130..1]
gi\|77957934 - gi\|77957934\|ref\|ZP_00821977.1\| COG1516: Flagellin-specific chaperone FliS [Yersinia bercovieri ATCC ...	166.0	[0..1]	[130..1]
gi\|29141403, gi\|... - gi\|29141403\|ref\|NP_804745.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar Typ... gi\|16760905 - gi\|16760905\|ref\|NP_456522.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar Typ... gi\|25303004, gi\|... - gi\|25303004\|pir\|\|AB0751 flagellar protein FliS [imported] - Salmonella enterica subsp. enterica sero... gi\|214001882 - gi\|214001882\|ref\|ZP_03412617.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar ... gi\|213580924 - gi\|213580924\|ref\|ZP_03362750.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar ... gi\|213426349 - gi\|213426349\|ref\|ZP_03359099.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar ... gi\|213649070 - gi\|213649070\|ref\|ZP_03379123.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar ... gi\|213613358 - gi\|213613358\|ref\|ZP_03371184.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar ... gi\|213053504 - gi\|213053504\|ref\|ZP_03346382.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar ...	166.0	[0..1]	[135..1]
gi\|77975698 - gi\|77975698\|ref\|ZP_00831232.1\| COG1516: Flagellin-specific chaperone FliS [Yersinia frederiksenii AT...	165.0	[0..1]	[130..1]
gi\|77979910 - gi\|77979910\|ref\|ZP_00835326.1\| COG1516: Flagellin-specific chaperone FliS [Yersinia intermedia ATCC ...	164.0	[0..1]	[130..1]
Q66BQ9\|Q66BQ9_YERPS - Flagellar protein FliS - Yersinia pseudotuberculosis gi\|152959429, gi... - gi\|77628909\|ref\|ZP_00791495.1\| COG1516: Flagellin-specific chaperone FliS [Yersinia pseudotuberculos... gi\|169751142, gi... - gi\|170024608\|ref\|YP_001721113.1\| flagellar protein FliS [Yersinia pseudotuberculosis YPIII], gi\|1697... gi\|186698178, gi... - gi\|186895152\|ref\|YP_001872264.1\| flagellar protein FliS [Yersinia pseudotuberculosis PB1/+], gi\|1866... gi\|51596047, gi\|... - gi\|51596047\|ref\|YP_070238.1\| flagellar protein FliS [Yersinia pseudotuberculosis IP 32953], gi\|51589...	162.0	[0..1]	[130..1]
gi\|49611188, gi\|... - gi\|50120662\|ref\|YP_049829.1\| flagellar protein FliS [Pectobacterium atrosepticum SCRI1043], gi\|49611...	162.0	[0..1]	[133..1]
gi\|18642461 - gi\|18642461\|emb\|CAD22872.1\| FliS protein [Erwinia chrysanthemi]	162.0	[0..1]	[127..1]
gi\|167468931 - gi\|167468931\|ref\|ZP_02333635.1\| flagellar protein FliS [Yersinia pestis FV-1] gi\|229701209, gi... - gi\|229896286\|ref\|ZP_04511456.1\| flagellar protein FliS [Yersinia pestis Pestoides A], gi\|229701209\|g... gi\|229897222, gi... - gi\|229897222\|ref\|ZP_04512378.1\| flagellar protein FliS [Yersinia pestis biovar Orientalis str. PEXU2... gi\|229688990, gi... - gi\|229897949\|ref\|ZP_04513100.1\| flagellar protein FliS [Yersinia pestis biovar Orientalis str. India... gi\|165926023, gi... - gi\|165926023\|ref\|ZP_02221855.1\| flagellar protein FliS [Yersinia pestis biovar Orientalis str. F1991... gi\|165990216, gi... - gi\|166010872\|ref\|ZP_02231770.1\| flagellar protein FliS [Yersinia pestis biovar Antiqua str. E1979001... gi\|89105436, gi\|... - gi\|89105436\|ref\|ZP_01177955.1\| COG1516: Flagellin-specific chaperone FliS [Yersinia pestis biovar Or... gi\|166207856, gi... - gi\|166210676\|ref\|ZP_02236711.1\| flagellar protein FliS [Yersinia pestis biovar Antiqua str. B4200300... gi\|108807212, gi... - gi\|108807212\|ref\|YP_651128.1\| flagellar protein FliS [Yersinia pestis Antiqua], gi\|108779125\|gb\|ABG1... gi\|167049566, gi... - gi\|167401177\|ref\|ZP_02306680.1\| flagellar protein FliS [Yersinia pestis biovar Antiqua str. UG05-045... gi\|77635987, gi\|... - gi\|77635987\|ref\|ZP_00798065.1\| COG1516: Flagellin-specific chaperone FliS [Yersinia pestis Angola], ... gi\|108776092, gi... - gi\|229902820\|ref\|ZP_04517937.1\| flagellar protein FliS [Yersinia pestis Nepal516], gi\|229680267\|gb\|E... gi\|166961642, gi... - gi\|167419947\|ref\|ZP_02311700.1\| flagellar protein FliS [Yersinia pestis biovar Orientalis str. MG05-... gi\|167055182, gi... - gi\|167425783\|ref\|ZP_02317536.1\| flagellar protein FliS [Yersinia pestis biovar Mediaevalis str. K197... gi\|149366214, gi... - gi\|149366214\|ref\|ZP_01888249.1\| flagellar protein FliS [Yersinia pestis CA88-4125], gi\|149292627\|gb\|... gi\|145210270, gi... - gi\|145598574\|ref\|YP_001162650.1\| flagellar protein FliS [Yersinia pestis Pestoides F], gi\|145210270\|... gi\|22126350, gi\|... - gi\|22126350\|ref\|NP_669773.1\| flagellar protein FliS [Yersinia pestis KIM], gi\|21959333\|gb\|AAM86024.1... gi\|25303003 - pir\|\|AE0224 flagellar protein FliS [imported] - Yersinia pestis (strain CO92) gi\|218928959, gi... - gi\|218928959\|ref\|YP_002346834.1\| flagellar protein FliS [Yersinia pestis CO92], gi\|16122091\|ref\|NP_4... gi\|45436232, gi\|... - gi\|45441372\|ref\|NP_992911.1\| flagellar protein FliS [Yersinia pestis biovar Microtus str. 91001], gi...	160.0	[0..1]	[130..1]
gi\|73532524 - gi\|73532524\|dbj\|BAE19820.1\| flagellar protein [Edwardsiella tarda]	159.0	[0..1]	[134..1]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYTASGIKAY AQVSVESAVM SASPHQLIEM LFDGANSALV RARLFLEQGD VVAKGEALSK  60
   61 AINIIDNGLK AGLDQEKGGE IATNLSELYD YMIRRLLQAN LRNDAQAIEE VEGLLSNIAE 120
  121 AWKQISPKAS FQESR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.045757
Match:	1vh6A
Description:	Crystal structure of a flagellar protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits