YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213580478
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E98-0664
Length:	386 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213580478.

Description	E-value	Query Range	Subject Range
PHEA_ENTAG - P-protein OS=Enterobacter agglomerans GN=pheA PE=3 SV=1	0.0	[1..385]	[1..385]
gi\|75258018, gi\|... - gi\|75258018\|ref\|ZP_00729492.1\| COG0077: Prephenate dehydratase [Escherichia coli E22], gi\|193064083\|... gi\|75208567, gi\|... - gi\|75208567\|ref\|ZP_00708880.1\| COG0077: Prephenate dehydratase [Escherichia coli B171], gi\|194430173...	0.0	[1..386]	[1..386]
PHEA_SHIFL - P-protein OS=Shigella flexneri GN=pheA PE=3 SV=1 gi\|15832716, gi\|... - gi\|15832716\|ref\|NP_311489.1\| bifunctional chorismate mutase/prephenate dehydratase [Escherichia coli... gi\|24113938, gi\|... - gi\|24113938\|ref\|NP_708448.1\| bifunctional chorismate mutase/prephenate dehydratase [Shigella flexner... gi\|110806734, gi... - gi\|110806734\|ref\|YP_690254.1\| bifunctional chorismate mutase/prephenate dehydratase [Shigella flexne... gi\|238901759, gi... - gi\|238901759\|ref\|YP_002927555.1\| fused chorismate mutase P/prephenate dehydratase [Escherichia coli ... EG10707 - chorismate mutase and prephenate dehydratase, P-protein / Chorismate mutase and prephenate dehydrata... gi\|251785921, gi... - gi\|251785921\|ref\|YP_003000225.1\| hypothetical protein B21_02452 [Escherichia coli BL21], gi\|24237819... gi\|253323551, gi... - gi\|254289330\|ref\|YP_003055078.1\| fused chorismate mutase P/prephenate dehydratase [Escherichia coli ... gi\|30042255, gi\|... - gi\|30063999\|ref\|NP_838170.1\| bifunctional chorismate mutase/prephenate dehydratase [Shigella flexner... gi\|254162569, gi... - gi\|254162569\|ref\|YP_003045677.1\| fused chorismate mutase P/prephenate dehydratase [Escherichia coli ... PHEA_ECO57 - P-protein OS=Escherichia coli O157:H7 GN=pheA PE=3 SV=1 gi\|1800004, gi\|8... - gi\|89109400\|ref\|AP_003180.1\| fused chorismate mutase P and prephenate dehydratase [Escherichia coli ... gi\|254794545, gi... - gi\|254794545\|ref\|YP_003079382.1\| chorismate mutase-P and prephenate dehydratase [Escherichia coli O1... gi\|124527998, gi... - gi\|124527998\|ref\|ZP_01699351.1\| chorismate mutase [Escherichia coli B], gi\|124500890\|gb\|EAY48358.1\| ... gi\|168801716, gi... - gi\|189376177\|gb\|EDU94593.1\| chorismate mutase/prephenate dehydratase [Escherichia coli O157:H7 str. ... gi\|189370904, gi... - gi\|189370904\|gb\|EDU89320.1\| chorismate mutase/prephenate dehydratase [Escherichia coli O157:H7 str. ... gi\|170082203, gi... - gi\|170082203\|ref\|YP_001731523.1\| bifunctional chorismate mutase P and prephenate dehydratase [Escher... EG10707 - chorismate mutase and prephenate dehydratase, P-protein / Chorismate mutase and prephenate dehydrata... gi\|169754052, gi... - gi\|170019124\|ref\|YP_001724078.1\| bifunctional chorismate mutase/prephenate dehydratase [Escherichia ... gi\|195940193 - gi\|195940193\|ref\|ZP_03085575.1\| bifunctional chorismate mutase/prephenate dehydratase [Escherichia c... gi\|194416646, gi... - gi\|194435115\|ref\|ZP_03067351.1\| chorismate mutase/prephenate dehydratase [Shigella dysenteriae 1012]... gi\|208733388, gi... - gi\|208812111\|ref\|ZP_03253440.1\| P-protein [Escherichia coli O157:H7 str. EC4045], gi\|208733388\|gb\|ED... gi\|208806829, gi... - gi\|208806829\|ref\|ZP_03249166.1\| P-protein [Escherichia coli O157:H7 str. EC4206], gi\|208726630\|gb\|ED... gi\|189354540, gi... - gi\|189354540\|gb\|EDU72959.1\| chorismate mutase/prephenate dehydratase [Escherichia coli O157:H7 str. ... gi\|188014013, gi... - gi\|188014013\|gb\|EDU52135.1\| chorismate mutase/prephenate dehydratase [Escherichia coli O157:H7 str. ... gi\|168771704, gi... - gi\|189359604\|gb\|EDU78023.1\| chorismate mutase/prephenate dehydratase [Escherichia coli O157:H7 str. ... gi\|189367221, gi... - gi\|189367221\|gb\|EDU85637.1\| chorismate mutase/prephenate dehydratase [Escherichia coli O157:H7 str. ... gi\|189003474, gi... - gi\|189003474\|gb\|EDU72460.1\| chorismate mutase/prephenate dehydratase [Escherichia coli O157:H7 str. ... gi\|187770623, gi... - gi\|187770623\|gb\|EDU34467.1\| chorismate mutase/prephenate dehydratase [Escherichia coli O157:H7 str. ... gi\|157162073, gi... - gi\|75196612\|ref\|ZP_00706682.1\| COG0077: Prephenate dehydratase [Escherichia coli HS], gi\|157162073\|r... gi\|209160459, gi... - gi\|209399059\|ref\|YP_002272070.1\| P-protein [Escherichia coli O157:H7 str. EC4115], gi\|209160459\|gb\|A... gi\|208821481, gi... - gi\|208821481\|ref\|ZP_03261801.1\| P-protein [Escherichia coli O157:H7 str. EC4042], gi\|208741604\|gb\|ED... gi\|217326797, gi... - gi\|217326797\|ref\|ZP_03442880.1\| P-protein [Escherichia coli O157:H7 str. TW14588], gi\|217319164\|gb\|E... PHEA_ECOLI - P-protein [Includes: Chorismate mutase (EC 5.4.99.5) (CM); Prephenate dehydratase (EC 4.2.1.51) (PDT... gi\|194421707, gi... - gi\|83585233\|ref\|ZP_00923882.1\| COG0077: Prephenate dehydratase [Escherichia coli 101-1], gi\|19443934...	0.0	[1..386]	[1..386]
gi\|193071694, gi... - gi\|75214711\|ref\|ZP_00713219.1\| COG0077: Prephenate dehydratase [Escherichia coli E110019], gi\|193071... gi\|75227670, gi\|... - gi\|75227670\|ref\|ZP_00714411.1\| COG0077: Prephenate dehydratase [Escherichia coli B7A], gi\|191169056\|... gi\|218361946, gi... - gi\|218555178\|ref\|YP_002388091.1\| bifunctional chorismate mutase/prephenate dehydratase [Escherichia ... gi\|75178210, gi\|... - gi\|75178210\|ref\|ZP_00698269.1\| COG0077: Prephenate dehydratase [Shigella boydii BS512], gi\|187730271... gi\|157158544, gi... - gi\|75187346\|ref\|ZP_00700613.1\| COG0077: Prephenate dehydratase [Escherichia coli E24377A], gi\|157158... gi\|82545055, gi\|... - gi\|82545055\|ref\|YP_409002.1\| bifunctional chorismate mutase/prephenate dehydratase [Shigella boydii ... gi\|218696223, gi... - gi\|218696223\|ref\|YP_002403890.1\| bifunctional chorismate mutase/prephenate dehydratase [Escherichia ...	0.0	[1..386]	[1..386]
gi\|25292745 - gi\|25292745\|pir\|\|B85906 chorismate mutase-P and prephenate dehydratase [imported] - Escherichia coli... gi\|12517021, gi\|... - gi\|15803121\|ref\|NP_289152.1\| bifunctional chorismate mutase/prephenate dehydratase [Escherichia coli...	0.0	[1..386]	[1..386]
gi\|74313183, gi\|... - gi\|74313183\|ref\|YP_311602.1\| bifunctional chorismate mutase/prephenate dehydratase [Shigella sonnei ...	0.0	[1..386]	[1..386]
gi\|188494486, gi... - gi\|75513205\|ref\|ZP_00735647.1\| COG0077: Prephenate dehydratase [Escherichia coli 53638], gi\|18849448...	0.0	[1..386]	[1..386]
gi\|190905154, gi... - gi\|75236021\|ref\|ZP_00720155.1\| COG0077: Prephenate dehydratase [Escherichia coli F11], gi\|191174581\|... gi\|218559519, gi... - gi\|218559519\|ref\|YP_002392432.1\| bifunctional chorismate mutase/prephenate dehydratase [Escherichia ... gi\|226899853, gi... - gi\|237706813\|ref\|ZP_04537294.1\| chorismate mutase P/prephenate dehydratase [Escherichia sp. 3_2_53FA... gi\|91211933, gi\|... - gi\|91211933\|ref\|YP_541919.1\| bifunctional chorismate mutase/prephenate dehydratase [Escherichia coli... gi\|227888165, gi... - gi\|227888165\|ref\|ZP_04005970.1\| chorismate mutase [Escherichia coli 83972], gi\|227834805\|gb\|EEJ45271... gi\|110344352, gi... - gi\|110642760\|ref\|YP_670490.1\| bifunctional chorismate mutase/prephenate dehydratase [Escherichia col... gi\|26248962, gi\|... - gi\|26248962\|ref\|NP_755002.1\| bifunctional chorismate mutase/prephenate dehydratase [Escherichia coli... gi\|117624820, gi... - gi\|117624820\|ref\|YP_853733.1\| bifunctional chorismate mutase/prephenate dehydratase [Escherichia col...	0.0	[1..386]	[1..386]
gi\|238721179, gi... - gi\|77972191\|ref\|ZP_00827765.1\| COG0077: Prephenate dehydratase [Yersinia frederiksenii ATCC 33641], ...	0.0	[3..386]	[2..385]
gi\|81242100, gi\|... - gi\|82777952\|ref\|YP_404301.1\| bifunctional chorismate mutase/prephenate dehydratase [Shigella dysente...	0.0	[1..386]	[1..386]

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Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSENPLLAL RDKISALDEE LLALLAKRRA LAIEVGQAKL LSHRPVRDID RERALLDRLI  60
   61 HLGKAHHLDA HYITRLFQLI IEDSVLTQQA LLQQHLNNTH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.0
Match:	1ecmA
Description:	Chorismate mutase domain of P-protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
chorismate mutase activity	3.78733095924257	bayes_pls_golite062009
catalytic activity	1.09506175640279	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [101-386]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PHSARIAFLG PKGSYSHLAA RQYAARHFEQ FIESGCAKFT DIFHQVETGQ ADYAVVPIEN  60
   61 TNSGAINDVY DLLQHTSLSI VGEMTVTIDH CVLVSGATDL NTIETVYSHP QPFQQCSKFL 120
  121 SRYPHWKIDY TESTSAAMEK VAQANSPRVA ALGSEAGGML HGLQVLERIA ANQTQNITRF 180
  181 LVLARKAINV SDQVPAKTTL LIATGQQAGA LVEALLVLRN HNLIMTKLES RPIHGNPWEE 240
  241 MFYLDIQANL ESQVMQSALK ELGEITRSMK VLGCYPSENV VPVEPA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	83.221849
Match:	2qmxA
Description:	No description for 2qmxA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: