YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|161362389, gi...
Organism:	Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7
Length:	87 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|161362389, gi....

Description	E-value	Query Range	Subject Range
gi\|62128468, gi\|... - gi\|62180835\|ref\|YP_217252.1\| periplasmic nitrate reductase [Salmonella enterica subsp. enterica sero...	6.0E-29	[1..87]	[90..176]
gi\|77958999 - gi\|77958999\|ref\|ZP_00823024.1\| COG3062: Uncharacterized protein involved in formation of periplasmic...	2.0E-25	[3..87]	[4..88]
gi\|77960880 - gi\|77960880\|ref\|ZP_00824734.1\| COG3062: Uncharacterized protein involved in formation of periplasmic...	5.0E-25	[3..87]	[4..88]
gi\|21958221, gi\|... - gi\|22125341\|ref\|NP_668764.1\| assembly protein for periplasmic nitrate reductase [Yersinia pestis KIM... gi\|45442438, gi\|... - gi\|45442438\|ref\|NP_993977.1\| assembly protein for periplasmic nitrate reductase [Yersinia pestis bio...	1.0E-24	[4..87]	[7..90]
gi\|112823693, gi... - gi\|113461650\|ref\|YP_719719.1\| periplasmic nitrate reductase chaperone NapD [Haemophilus somnus 129PT...	2.0E-24	[3..85]	[75..156]
gi\|229899201, gi... - gi\|229899201\|ref\|ZP_04514344.1\| Periplasmic nitrate reductase component NapD [Yersinia pestis biovar... gi\|108808224, gi... - gi\|108808224\|ref\|YP_652140.1\| assembly protein for periplasmic nitrate reductase [Yersinia pestis An... gi\|170023628, gi... - gi\|170023628\|ref\|YP_001720133.1\| assembly protein for periplasmic nitrate reductase [Yersinia pseudo... gi\|229895701, gi... - gi\|229895701\|ref\|ZP_04510872.1\| Periplasmic nitrate reductase component NapD [Yersinia pestis Pestoi... gi\|108811509, gi... - gi\|229901773\|ref\|ZP_04516895.1\| Periplasmic nitrate reductase component NapD [Yersinia pestis Nepal5... gi\|186699193, gi... - gi\|186896167\|ref\|YP_001873279.1\| assembly protein for periplasmic nitrate reductase [Yersinia pseudo... gi\|229838635, gi... - gi\|229838635\|ref\|ZP_04458794.1\| Periplasmic nitrate reductase component NapD [Yersinia pestis biovar... gi\|149291513, gi... - gi\|149365100\|ref\|ZP_01887135.1\| assembly protein for periplasmic nitrate reductase [Yersinia pestis ... gi\|165935916, gi... - gi\|89104828\|ref\|ZP_01177360.1\| COG3062: Uncharacterized protein involved in formation of periplasmic... Q668H9\|Q668H9_YERPS - Putative uncharacterized protein napD precursor - Yersinia pseudotuberculosis gi\|165926875, gi... - gi\|165926875\|ref\|ZP_02222707.1\| NapD protein [Yersinia pestis biovar Orientalis str. F1991016], gi\|1... gi\|166011203, gi... - gi\|166011203\|ref\|ZP_02232101.1\| NapD protein [Yersinia pestis biovar Antiqua str. E1979001], gi\|1659... gi\|166212427, gi... - gi\|166212427\|ref\|ZP_02238462.1\| NapD protein [Yersinia pestis biovar Antiqua str. B42003004], gi\|166... gi\|167399389, gi... - gi\|167399389\|ref\|ZP_02304913.1\| NapD protein [Yersinia pestis biovar Antiqua str. UG05-0454], gi\|167... gi\|167422713, gi... - gi\|167422713\|ref\|ZP_02314466.1\| NapD protein [Yersinia pestis biovar Orientalis str. MG05-1020], gi\|... gi\|167056460, gi... - gi\|167424578\|ref\|ZP_02316331.1\| NapD protein [Yersinia pestis biovar Mediaevalis str. K1973002], gi\|... gi\|167467009 - gi\|167467009\|ref\|ZP_02331713.1\| assembly protein for periplasmic nitrate reductase [Yersinia pestis ... gi\|51590359, gi\|... - gi\|51597077\|ref\|YP_071268.1\| assembly protein for periplasmic nitrate reductase [Yersinia pseudotube... gi\|77633172, gi\|... - gi\|77633172\|ref\|ZP_00795318.1\| COG3062: Uncharacterized protein involved in formation of periplasmic... gi\|25303110 - pir\|\|AF0369 conserved hypothetical protein napD [imported] - Yersinia pestis (strain CO92) gi\|153949435, gi... - gi\|77629805\|ref\|ZP_00792391.1\| COG3062: Uncharacterized protein involved in formation of periplasmic... gi\|218930084, gi... - gi\|218930084\|ref\|YP_002347959.1\| assembly protein for periplasmic nitrate reductase [Yersinia pestis...	2.0E-24	[4..87]	[5..88]
gi\|77974600 - gi\|77974600\|ref\|ZP_00830139.1\| COG3062: Uncharacterized protein involved in formation of periplasmic...	2.0E-24	[3..87]	[4..88]
gi\|77977007 - gi\|77977007\|ref\|ZP_00832469.1\| COG3062: Uncharacterized protein involved in formation of periplasmic...	2.0E-23	[4..87]	[5..88]
NAPD_SHIFL - Protein NapD OS=Shigella flexneri GN=napD PE=3 SV=1 gi\|24052645, gi\|... - gi\|24113593\|ref\|NP_708103.1\| assembly protein for periplasmic nitrate reductase [Shigella flexneri 2... gi\|30063647, gi\|... - gi\|30063647\|ref\|NP_837818.1\| assembly protein for periplasmic nitrate reductase [Shigella flexneri 2... NAPD_ECO57 - Protein NapD OS=Escherichia coli O157:H7 GN=napD PE=3 SV=1 EG12143 - assembly protein for periplasmic nitrate reductase / Twin-arginine signal-peptide-binding chaperone ... gi\|12516539, gi\|... - gi\|15802760\|ref\|NP_288787.1\| assembly protein for periplasmic nitrate reductase [Escherichia coli O1... gi\|15832350, gi\|... - gi\|15832350\|ref\|NP_311123.1\| assembly protein for periplasmic nitrate reductase [Escherichia coli O1... gi\|218432833, gi... - gi\|218705736\|ref\|YP_002413255.1\| assembly protein for periplasmic nitrate reductase [Escherichia col... gi\|254794106, gi... - gi\|254794106\|ref\|YP_003078943.1\| assembly protein for periplasmic nitrate reductase [Escherichia col... gi\|254162219, gi... - gi\|254162219\|ref\|YP_003045327.1\| assembly protein for periplasmic nitrate reductase [Escherichia col... gi\|253772869, gi... - gi\|254288980\|ref\|YP_003054728.1\| assembly protein for periplasmic nitrate reductase [Escherichia col... gi\|251785570, gi... - gi\|251785570\|ref\|YP_002999874.1\| hypothetical protein B21_02093 [Escherichia coli BL21], gi\|24237784... gi\|238901381, gi... - gi\|238901381\|ref\|YP_002927177.1\| assembly protein for periplasmic nitrate reductase [Escherichia col... EG12143 - assembly protein for periplasmic nitrate reductase / Twin-arginine signal-peptide-binding chaperone ... gi\|168749613, gi... - gi\|188016076\|gb\|EDU54198.1\| NapD protein [Escherichia coli O157:H7 str. EC4113], gi\|168749613\|ref\|ZP... NAPD_ECOLI - Protein napD - Escherichia coli gi\|189357719, gi... - gi\|189357719\|gb\|EDU76138.1\| NapD protein [Escherichia coli O157:H7 str. EC4401], gi\|168754957\|ref\|ZP... gi\|168764702, gi... - gi\|189365356\|gb\|EDU83772.1\| NapD protein [Escherichia coli O157:H7 str. EC4501], gi\|168764702\|ref\|ZP... gi\|189362806, gi... - gi\|189362806\|gb\|EDU81225.1\| NapD protein [Escherichia coli O157:H7 str. EC4486], gi\|168767830\|ref\|ZP... gi\|187771282, gi... - gi\|187771282\|gb\|EDU35126.1\| NapD protein [Escherichia coli O157:H7 str. EC4196], gi\|168773072\|ref\|ZP... gi\|208814210, gi... - gi\|208814210\|ref\|ZP_03255539.1\| NapD protein [Escherichia coli O157:H7 str. EC4045], gi\|208735487\|gb... gi\|208819182, gi... - gi\|208819182\|ref\|ZP_03259502.1\| NapD protein [Escherichia coli O157:H7 str. EC4042], gi\|208739305\|gb... gi\|209400362, gi... - gi\|209400362\|ref\|YP_002271619.1\| NapD protein [Escherichia coli O157:H7 str. EC4115], gi\|209161762\|g... gi\|209919666, gi... - gi\|209919666\|ref\|YP_002293750.1\| assembly protein for periplasmic nitrate reductase [Escherichia col... gi\|217319769, gi... - gi\|217327402\|ref\|ZP_03443485.1\| NapD protein [Escherichia coli O157:H7 str. TW14588], gi\|217319769\|g... gi\|218357163, gi... - gi\|218549622\|ref\|YP_002383413.1\| assembly protein for periplasmic nitrate reductase [Escherichia fer... gi\|218361543, gi... - gi\|218554775\|ref\|YP_002387688.1\| assembly protein for periplasmic nitrate reductase [Escherichia col... gi\|218695819, gi... - gi\|218695819\|ref\|YP_002403486.1\| assembly protein for periplasmic nitrate reductase [Escherichia col... gi\|189002066, gi... - gi\|189002066\|gb\|EDU71052.1\| NapD protein [Escherichia coli O157:H7 str. EC4076], gi\|168780059\|ref\|ZP... gi\|189372893, gi... - gi\|189372893\|gb\|EDU91309.1\| NapD protein [Escherichia coli O157:H7 str. EC869], gi\|168787116\|ref\|ZP_... gi\|189375584, gi... - gi\|189375584\|gb\|EDU94000.1\| NapD protein [Escherichia coli O157:H7 str. EC508], gi\|168802422\|ref\|ZP_... gi\|89109023, gi\|... - gi\|89109023\|ref\|AP_002803.1\| assembly protein for periplasmic nitrate reductase [Escherichia coli st... gi\|170019479, gi... - gi\|170019479\|ref\|YP_001724433.1\| assembly protein for periplasmic nitrate reductase [Escherichia col... gi\|170081827, gi... - gi\|170081827\|ref\|YP_001731147.1\| assembly protein for periplasmic nitrate reductase [Escherichia col... gi\|194434222, gi... - gi\|194434222\|ref\|ZP_03066489.1\| NapD protein [Shigella dysenteriae 1012], gi\|194417551\|gb\|EDX33653.1... gi\|195935587 - gi\|195935587\|ref\|ZP_03080969.1\| assembly protein for periplasmic nitrate reductase [Escherichia coli... gi\|208729495, gi... - gi\|208809694\|ref\|ZP_03252031.1\| NapD protein [Escherichia coli O157:H7 str. EC4206], gi\|208729495\|gb... gi\|82544559, gi\|... - gi\|82544559\|ref\|YP_408506.1\| assembly protein for periplasmic nitrate reductase [Shigella boydii Sb2... gi\|74312728, gi\|... - gi\|74312728\|ref\|YP_311147.1\| assembly protein for periplasmic nitrate reductase [Shigella sonnei Ss0... gi\|75211623, gi\|... - gi\|75211623\|ref\|ZP_00711702.1\| COG3062: Uncharacterized protein involved in formation of periplasmic... gi\|157161688, gi... - gi\|75196249\|ref\|ZP_00706319.1\| COG3062: Uncharacterized protein involved in formation of periplasmic... gi\|157157310, gi... - gi\|75187003\|ref\|ZP_00700270.1\| COG3062: Uncharacterized protein involved in formation of periplasmic... gi\|187428962, gi... - gi\|75176161\|ref\|ZP_00696319.1\| COG3062: Uncharacterized protein involved in formation of periplasmic... gi\|188492819, gi... - gi\|75514429\|ref\|ZP_00736707.1\| COG3062: Uncharacterized protein involved in formation of periplasmic... gi\|75259679, gi\|... - gi\|75259679\|ref\|ZP_00730981.1\| COG3062: Uncharacterized protein involved in formation of periplasmic... gi\|193068186, gi... - gi\|75238001\|ref\|ZP_00722006.1\| COG3062: Uncharacterized protein involved in formation of periplasmic... gi\|124501847, gi... - gi\|124526376\|ref\|ZP_01698329.1\| NapD family protein [Escherichia coli B], gi\|124501847\|gb\|EAY49308.1... gi\|75231455, gi\|... - gi\|75231455\|ref\|ZP_00717824.1\| COG3062: Uncharacterized protein involved in formation of periplasmic... gi\|83588191, gi\|... - gi\|83588191\|ref\|ZP_00926816.1\| COG3062: Uncharacterized protein involved in formation of periplasmic...	4.0E-23	[1..87]	[1..87]
gi\|82776190, gi\|... - gi\|82776190\|ref\|YP_402539.1\| assembly protein for periplasmic nitrate reductase [Shigella dysenteria...	4.0E-23	[1..87]	[1..87]

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Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTNWQVCSL VVQAKSQNIA AIGTQLNTLP GCEVALSDVE SGQLIVVAEA DQSETLMQTI  60
   61 ESVRNVEGVL AVSLVYHQQD EQGEETP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.0
Match:	2jsxA
Description:	No description for 2jsxA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits