YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213161273
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E00-7866
Length:	96 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213161273.

Description	E-value	Query Range	Subject Range
gi\|238912059 - gi\|238912059\|ref\|ZP_04655896.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enteri... lcl\|NC_016856.1_... - [gene=yebG] [protein=DNA damage-inducible protein YebG] [protein_id=YP_005237841.1] [location=comple... gi\|207856597, gi... - gi\|207856597\|ref\|YP_002243248.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enter... gi\|224583615, gi... - gi\|224583615\|ref\|YP_002637413.1\| hypothetical protein SPC_1834 [Salmonella enterica subsp. enterica ... gi\|198244625, gi... - gi\|198244625\|ref\|YP_002215205.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica s... gi\|205352412, gi... - gi\|205352412\|ref\|YP_002226213.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enter... gi\|197250840, gi... - gi\|197250840\|ref\|YP_002146141.1\| yebG protein [Salmonella enterica subsp. enterica serovar Agona str... gi\|197241960, gi... - gi\|197263705\|ref\|ZP_03163779.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica se... gi\|62180457, gi\|... - gi\|62180457\|ref\|YP_216874.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enterica ... gi\|194455654, gi... - gi\|194469290\|ref\|ZP_03075274.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica se... gi\|194736396, gi... - gi\|194736396\|ref\|YP_002114917.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica s... gi\|194444152, gi... - gi\|194444152\|ref\|YP_002041147.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica s... gi\|194406027, gi... - gi\|194447723\|ref\|YP_002045935.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enter... gi\|195634280, gi... - gi\|195634280\|gb\|EDX52632.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica serova... gi\|205342737, gi... - gi\|205342737\|gb\|EDZ29501.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica serova... gi\|168241506, gi... - gi\|205339350\|gb\|EDZ26114.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica serova... gi\|168259849, gi... - gi\|205350747\|gb\|EDZ37378.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica serova... gi\|168233696, gi... - gi\|205332305\|gb\|EDZ19069.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica serova... gi\|168238508, gi... - gi\|197288661\|gb\|EDY28036.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica serova... gi\|16420417, gi\|... - gi\|16765224\|ref\|NP_460839.1\| DNA damage-inducible protein YebG [Salmonella typhimurium LT2], gi\|1642... gi\|167552488, gi... - gi\|205322920\|gb\|EDZ10759.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica serova... gi\|167993857, gi... - gi\|205328201\|gb\|EDZ14965.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica serova...	126.0	[0..1]	[96..1]
gi\|74311829, gi\|... - gi\|74311829\|ref\|YP_310248.1\| DNA damage-inducible protein YebG [Shigella sonnei Ss046], gi\|73855306\|... gi\|81240581, gi\|... - gi\|82776433\|ref\|YP_402782.1\| DNA damage-inducible protein YebG [Shigella dysenteriae Sd197], gi\|8124... gi\|75255863, gi\|... - gi\|75255863\|ref\|ZP_00727602.1\| COG3141: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|188494367, gi... - gi\|75511819\|ref\|ZP_00734437.1\| COG3141: Uncharacterized protein conserved in bacteria [Escherichia c... YEBG_ECO57 - Uncharacterized protein YebG OS=Escherichia coli O157:H7 GN=yebG PE=4 SV=1 gi\|75190877, gi\|... - gi\|75190877\|ref\|ZP_00704144.1\| COG3141: Uncharacterized protein conserved in bacteria [Escherichia c... YEBG_ECOL6 - Uncharacterized protein YebG OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yebG ... gi\|157161316, gi... - gi\|75195913\|ref\|ZP_00705983.1\| COG3141: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|15802261, gi\|... - gi\|15802261\|ref\|NP_288285.1\| DNA damage-inducible protein YebG [Escherichia coli O157:H7 EDL933], gi... EG11808 - DNA damage-inducible protein regulated by LexA / DNA damage-inducible gene, SOS regulon; requires H-... gi\|83585551, gi\|... - gi\|83585551\|ref\|ZP_00924195.1\| COG3141: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75235348, gi\|... - gi\|75235348\|ref\|ZP_00719574.1\| COG3141: Uncharacterized protein conserved in bacteria [Escherichia c... YEBG_ECOL6 - Uncharacterized protein yebG OS=Escherichia coli O6 GN=yebG PE=4 SV=1 gi\|191173002, gi... - gi\|75239731\|ref\|ZP_00723694.1\| COG3141: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75209106, gi\|... - gi\|75209106\|ref\|ZP_00709361.1\| COG3141: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75228298, gi\|... - gi\|75228298\|ref\|ZP_00714950.1\| COG3141: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|209157585, gi... - gi\|209396185\|ref\|YP_002270930.1\| YebG protein [Escherichia coli O157:H7 str. EC4115], gi\|209157585\|g... gi\|209919214, gi... - gi\|209919214\|ref\|YP_002293298.1\| DNA damage-inducible protein YebG [Escherichia coli SE11], gi\|20991... gi\|124530958, gi... - gi\|124530958\|ref\|ZP_01701414.1\| YebG family protein [Escherichia coli B], gi\|124498853\|gb\|EAY46354.1... gi\|217328741, gi... - gi\|217328741\|ref\|ZP_03444822.1\| YebG protein [Escherichia coli O157:H7 str. TW14588], gi\|217318088\|g... gi\|218361190, gi... - gi\|218554422\|ref\|YP_002387335.1\| DNA damage-inducible protein YebG [Escherichia coli IAI1], gi\|21836... gi\|218558712, gi... - gi\|218558712\|ref\|YP_002391625.1\| DNA damage-inducible protein YebG [Escherichia coli S88], gi\|218365... gi\|218427350, gi... - gi\|218689786\|ref\|YP_002397998.1\| DNA damage-inducible protein YebG [Escherichia coli ED1a], gi\|21842... gi\|218352146, gi... - gi\|218695414\|ref\|YP_002403081.1\| DNA damage-inducible protein YebG [Escherichia coli 55989], gi\|2183... gi\|218699581, gi... - gi\|218699581\|ref\|YP_002407210.1\| DNA damage-inducible protein YebG [Escherichia coli IAI39], gi\|2183... gi\|170019807, gi... - gi\|170019807\|ref\|YP_001724761.1\| DNA damage-inducible protein YebG [Escherichia coli ATCC 8739], gi\|... gi\|170081504, gi... - gi\|170081504\|ref\|YP_001730824.1\| protein regulated by LexA [Escherichia coli str. K-12 substr. DH10B... EG11808 - DNA damage-inducible protein regulated by LexA / DNA damage-inducible gene, SOS regulon; requires H-... gi\|170517566, gi... - gi\|170679848\|ref\|YP_001743397.1\| YebG protein [Escherichia coli SMS-3-5], gi\|170517566\|gb\|ACB15744.1... gi\|194417825, gi... - gi\|194433953\|ref\|ZP_03066225.1\| YebG protein [Shigella dysenteriae 1012], gi\|194417825\|gb\|EDX33922.1... gi\|195939750 - gi\|195939750\|ref\|ZP_03085132.1\| DNA damage-inducible protein YebG [Escherichia coli O157:H7 str. EC4... gi\|208810762, gi... - gi\|208810762\|ref\|ZP_03252638.1\| YebG protein [Escherichia coli O157:H7 str. EC4206], gi\|208725278\|gb... gi\|208816526, gi... - gi\|208816526\|ref\|ZP_03257646.1\| YebG protein [Escherichia coli O157:H7 str. EC4045], gi\|208730869\|gb... gi\|208738321, gi... - gi\|208818198\|ref\|ZP_03258518.1\| YebG protein [Escherichia coli O157:H7 str. EC4042], gi\|208738321\|gb... gi\|254592872, gi... - gi\|254793472\|ref\|YP_003078309.1\| conserved protein regulated by LexA [Escherichia coli O157:H7 str. ... gi\|253973809, gi... - gi\|254161908\|ref\|YP_003045016.1\| conserved hypothetical protein regulated by LexA [Escherichia coli ... gi\|254288696, gi... - gi\|254288696\|ref\|YP_003054444.1\| conserved protein regulated by LexA [Escherichia coli BL21(DE3)], g... gi\|251785296, gi... - gi\|251785296\|ref\|YP_002999600.1\| hypothetical protein B21_01807 [Escherichia coli BL21], gi\|24237756... gi\|238860586, gi... - gi\|238901063\|ref\|YP_002926859.1\| hypothetical protein BWG_1662 [Escherichia coli BW2952], gi\|2388605... gi\|237705801, gi... - gi\|237705801\|ref\|ZP_04536282.1\| DNA damage-inducible protein YebG [Escherichia sp. 3_2_53FAA], gi\|22... gi\|227837298, gi... - gi\|227885725\|ref\|ZP_04003530.1\| DNA damage-inducible protein YebG [Escherichia coli 83972], gi\|22783... gi\|218432446, gi... - gi\|218705349\|ref\|YP_002412868.1\| DNA damage-inducible protein YebG [Escherichia coli UMN026], gi\|218... YEBG_ECOLI - Hypothetical protein yebG - Escherichia coli gi\|89108688, gi\|... - gi\|89108688\|ref\|AP_002468.1\| conserved hypothetical protein regulated by LexA [Escherichia coli str.... gi\|91211072, gi\|... - gi\|91211072\|ref\|YP_541058.1\| DNA damage-inducible protein YebG [Escherichia coli UTI89], gi\|91072646... gi\|15831812, gi\|... - gi\|15831812\|ref\|NP_310585.1\| DNA damage-inducible protein YebG [Escherichia coli O157:H7 str. Sakai]... gi\|188013990, gi... - gi\|188013990\|gb\|EDU52112.1\| YebG protein [Escherichia coli O157:H7 str. EC4113], gi\|168752100\|ref\|ZP... gi\|168758571, gi... - gi\|189354627\|gb\|EDU73046.1\| YebG protein [Escherichia coli O157:H7 str. EC4401], gi\|168758571\|ref\|ZP... gi\|168762358, gi... - gi\|189367357\|gb\|EDU85773.1\| YebG protein [Escherichia coli O157:H7 str. EC4501], gi\|168762358\|ref\|ZP... gi\|110641966, gi... - gi\|110641966\|ref\|YP_669696.1\| DNA damage-inducible protein YebG [Escherichia coli 536], gi\|110343558... gi\|189360276, gi... - gi\|189360276\|gb\|EDU78695.1\| YebG protein [Escherichia coli O157:H7 str. EC4486], gi\|168770830\|ref\|ZP... gi\|187767076, gi... - gi\|187767076\|gb\|EDU30920.1\| YebG protein [Escherichia coli O157:H7 str. EC4196], gi\|168777748\|ref\|ZP... gi\|188999458, gi... - gi\|188999458\|gb\|EDU68444.1\| YebG protein [Escherichia coli O157:H7 str. EC4076], gi\|168783148\|ref\|ZP... gi\|168802373, gi... - gi\|189375628\|gb\|EDU94044.1\| YebG protein [Escherichia coli O157:H7 str. EC508], gi\|168802373\|ref\|ZP_...	122.0	[0..1]	[96..1]
gi\|82543672, gi\|... - gi\|82543672\|ref\|YP_407619.1\| DNA damage-inducible protein YebG [Shigella boydii Sb227], gi\|81245083\|...	122.0	[0..1]	[85..1]
gi\|37680803, gi\|... - gi\|37680803\|ref\|NP_935412.1\| hypothetical protein VV2619 [Vibrio vulnificus YJ016], gi\|37199552\|dbj\|...	116.0	[0..1]	[86..1]
gi\|27361290, gi\|... - gi\|27365144\|ref\|NP_760672.1\| hypothetical protein VV1_1791 [Vibrio vulnificus CMCP6], gi\|27361290\|gb...	113.0	[0..1]	[91..1]
gi\|121549564, gi... - gi\|121586152\|ref\|ZP_01675943.1\| conserved hypothetical protein [Vibrio cholerae 2740-80], gi\|1215495... gi\|153213932, gi... - gi\|153213932\|ref\|ZP_01949128.1\| conserved hypothetical protein [Vibrio cholerae 1587], gi\|124115585\|... gi\|150423921, gi... - gi\|254286011\|ref\|ZP_04960972.1\| conserved hypothetical protein [Vibrio cholerae AM-19226], gi\|197752... gi\|75829995, gi\|... - gi\|75830009\|ref\|ZP_00759295.1\| COG3141: Uncharacterized protein conserved in bacteria [Vibrio choler... gi\|124119716, gi... - gi\|153221369\|ref\|ZP_01952347.1\| conserved hypothetical protein [Vibrio cholerae MAK 757], gi\|1241197... gi\|153828194, gi... - gi\|153828194\|ref\|ZP_01980861.1\| conserved hypothetical protein [Vibrio cholerae 623-39], gi\|14887628... gi\|124123396, gi... - gi\|153801042\|ref\|ZP_01955628.1\| conserved hypothetical protein [Vibrio cholerae MZO-3], gi\|124123396... gi\|153817865, gi... - gi\|153817865\|ref\|ZP_01970532.1\| conserved hypothetical protein [Vibrio cholerae NCTC 8457], gi\|12651... gi\|227082450, gi... - gi\|227082450\|ref\|YP_002811001.1\| hypothetical protein VCM66_2249 [Vibrio cholerae M66-2], gi\|2270103... gi\|229352164, gi... - gi\|229512199\|ref\|ZP_04401678.1\| hypothetical protein VCE_003611 [Vibrio cholerae B33], gi\|229352164\|... gi\|229507605, gi... - gi\|229507605\|ref\|ZP_04397110.1\| hypothetical protein VCF_002834 [Vibrio cholerae BX 330286], gi\|2293... gi\|229349145, gi... - gi\|229513964\|ref\|ZP_04403426.1\| hypothetical protein VCB_001609 [Vibrio cholerae TMA 21], gi\|2293491... gi\|229519335, gi... - gi\|229519335\|ref\|ZP_04408778.1\| hypothetical protein VCC_003365 [Vibrio cholerae RC9], gi\|229344024\|... gi\|229341696, gi... - gi\|229521164\|ref\|ZP_04410584.1\| hypothetical protein VIF_001688 [Vibrio cholerae TM 11079-80], gi\|22... gi\|229524321, gi... - gi\|229524321\|ref\|ZP_04413726.1\| hypothetical protein VCA_001909 [Vibrio cholerae bv. albensis VL426]... gi\|229528679, gi... - gi\|229528679\|ref\|ZP_04418069.1\| hypothetical protein VCG_001765 [Vibrio cholerae 12129(1)], gi\|22933... gi\|229369766, gi... - gi\|229607111\|ref\|YP_002877759.1\| hypothetical protein VCD_002020 [Vibrio cholerae MJ-1236], gi\|22936... gi\|227014222, gi... - gi\|75827606\|ref\|ZP_00757041.1\| COG3141: Uncharacterized protein conserved in bacteria [Vibrio choler... gi\|153825967, gi... - gi\|153825967\|ref\|ZP_01978634.1\| conserved hypothetical protein [Vibrio cholerae MZO-2], gi\|149740284... gi\|254225830, gi... - gi\|75819583\|ref\|ZP_00749656.1\| COG3141: Uncharacterized protein conserved in bacteria [Vibrio choler... gi\|121630797, gi... - gi\|75816381\|ref\|ZP_00746853.1\| COG3141: Uncharacterized protein conserved in bacteria [Vibrio choler... gi\|9656893, gi\|1... - gi\|9656893\|gb\|AAF95470.1\| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N169... gi\|11292995 - pir\|\|D82089 conserved hypothetical protein VC2326 [imported] - Vibrio cholerae (strain N16961 serogr...	113.0	[0..1]	[89..1]
gi\|24348650, gi\|... - gi\|24374147\|ref\|NP_718190.1\| hypothetical protein SO_2604 [Shewanella oneidensis MR-1], gi\|24348650\|... SO2604 - conserved hypothetical protein	112.0	[0..1]	[91..1]
gi\|194535800, gi... - gi\|75824469\|ref\|ZP_00753922.1\| COG3141: Uncharacterized protein conserved in bacteria [Vibrio choler... tr\|A0A085TM72\|A0... - YebG family protein OS=Vibrio cholerae GN=DN31_1457 PE=4 SV=1, Putative uncharacterized protein OS=V...	111.0	[0..1]	[90..1]
gi\|120598620, gi... - gi\|82743253\|ref\|ZP_00905910.1\| conserved hypothetical protein [Shewanella sp. W3-18-1], gi\|82719384\|... gi\|77815172, gi\|... - gi\|77815172\|ref\|ZP_00814413.1\| YebG [Shewanella putrefaciens CN-32], gi\|77809840\|gb\|EAO94230.1\| YebG...	110.0	[0..1]	[83..1]
gi\|217973078, gi... - gi\|217973078\|ref\|YP_002357829.1\| YebG family protein [Shewanella baltica OS223], gi\|217498213\|gb\|ACK... gi\|68520015, gi\|... - gi\|68542319\|ref\|ZP_00582052.1\| YebG [Shewanella baltica OS155], gi\|68520015\|gb\|EAN43531.1\| YebG [She...	109.0	[0..1]	[81..1]

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Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVEVKYVVI REGEEKMSFT SKKEADAWDK MLDTADLLDT WLEQSPVVLE DGQREALSLW  60
   61 MAEHKEVLST ILKTGKLPSP QAVEKDAASK TKKQAA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	48.113509
Match:	PF07130.3
Description:	No description for PF07130.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits