YRC Public Data Repository - Protein Structure Prediction

Protein:	GERPB_BACSU
Organism:	Bacillus subtilis subsp. subtilis str. 168
Length:	77 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GERPB_BACSU.

Description	E-value	Query Range	Subject Range
gi\|7475084 - gi\|7475084\|pir\|\|G69836 hypothetical protein yisG - Bacillus subtilis gi\|16078135, gi\|... - gi\|2633407\|emb\|CAB12911.1\| spore germination protein [Bacillus subtilis subsp. subtilis str. 168], g...	121.0	[0..1]	[77..4]
gi\|52002783, gi\|... - gi\|52784936\|ref\|YP_090765.1\| GerPB [Bacillus licheniformis ATCC 14580], gi\|52347438\|gb\|AAU40072.1\| G...	119.0	[0..1]	[75..1]
gi\|89087187, gi\|... - gi\|89098024\|ref\|ZP_01170910.1\| spore germination protein [Bacillus sp. NRRL B-14911], gi\|89087187\|gb...	97.0	[0..1]	[74..1]
gi\|228984317, gi... - gi\|228984317\|ref\|ZP_04144498.1\| hypothetical protein bthur0001_10240 [Bacillus thuringiensis serovar... gi\|229028917, gi... - gi\|229028917\|ref\|ZP_04185018.1\| hypothetical protein bcere0028_10210 [Bacillus cereus AH1271], gi\|22... gi\|229137935, gi... - gi\|229137935\|ref\|ZP_04266534.1\| hypothetical protein bcere0013_10600 [Bacillus cereus BDRD-ST26], gi... gi\|228628763, gi... - gi\|229154815\|ref\|ZP_04282930.1\| hypothetical protein bcere0010_10100 [Bacillus cereus ATCC 4342], gi... gi\|206737434, gi... - gi\|206968514\|ref\|ZP_03229470.1\| spore germination protein GerPB [Bacillus cereus AH1134], gi\|2067374... GERPB_BACCR - Probable spore germination protein GerPB OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 /... gi\|206976534, gi... - gi\|206976534\|ref\|ZP_03237440.1\| spore germination protein GerPB [Bacillus cereus H3081.97], gi\|20674... gi\|217067431, gi... - gi\|217958725\|ref\|YP_002337273.1\| spore germination protein GerPB [Bacillus cereus AH187], gi\|2170674... gi\|42736244, gi\|... - gi\|42780325\|ref\|NP_977572.1\| spore germination protein GerPB [Bacillus cereus ATCC 10987], gi\|427362... gi\|218159406, gi... - gi\|218231449\|ref\|YP_002365932.1\| spore germination protein GerPB [Bacillus cereus B4264], gi\|2181594... gi\|221238927, gi... - gi\|222094869\|ref\|YP_002528929.1\| spore germination protein GerPB [Bacillus cereus Q1], gi\|221238927\|... gi\|228821311, gi... - gi\|228938365\|ref\|ZP_04100976.1\| hypothetical protein bthur0008_10310 [Bacillus thuringiensis serovar... GERPB_BACCE - Probable spore germination protein GerPB OS=Bacillus cereus GN=gerPB PE=1 SV=1 gi\|228788479, gi... - gi\|228971244\|ref\|ZP_04131873.1\| hypothetical protein bthur0003_10240 [Bacillus thuringiensis serovar... gi\|47555802, gi\|... - gi\|47567607\|ref\|ZP_00238318.1\| spore germination protein PB-related protein [Bacillus cereus G9241],... gi\|228781871, gi... - gi\|228977853\|ref\|ZP_04138235.1\| hypothetical protein bthur0002_10600 [Bacillus thuringiensis Bt407],...	96.0	[0..1]	[68..1]
gi\|196036159, gi... - gi\|196036159\|ref\|ZP_03103558.1\| spore germination protein GerPB [Bacillus cereus W], gi\|195991134\|gb... gi\|196037398, gi... - gi\|196037398\|ref\|ZP_03104709.1\| spore germination protein GerPB [Bacillus cereus NVH0597-99], gi\|196... gi\|177655498, gi... - gi\|177655498\|ref\|ZP_02936941.1\| spore germination protein GerPB [Bacillus anthracis str. A0174], gi\|... gi\|190562136, gi... - gi\|190566584\|ref\|ZP_03019501.1\| spore germination protein GerPB [Bacillus anthracis Tsiankovskii-I],... gi\|170667947, gi... - gi\|170688052\|ref\|ZP_02879264.1\| spore germination protein GerPB [Bacillus anthracis str. A0465], gi\|... gi\|170707643, gi... - gi\|170707643\|ref\|ZP_02898095.1\| spore germination protein GerPB [Bacillus anthracis str. A0389], gi\|... gi\|167635376, gi... - gi\|167635376\|ref\|ZP_02393690.1\| spore germination protein GerPB [Bacillus anthracis str. A0442], gi\|... gi\|167640232, gi... - gi\|167640232\|ref\|ZP_02398498.1\| spore germination protein GerPB [Bacillus anthracis str. A0193], gi\|... gi\|164711155, gi... - gi\|165873101\|ref\|ZP_02217719.1\| spore germination protein GerPB [Bacillus anthracis str. A0488], gi\|... gi\|52144182, gi\|... - gi\|52144182\|ref\|YP_082646.1\| spore germination protein PB [Bacillus cereus E33L], gi\|51977651\|gb\|AAU... gi\|49184087, gi\|... - gi\|49184087\|ref\|YP_027339.1\| spore germination protein GerPB [Bacillus anthracis str. Sterne], gi\|49... gi\|49332448, gi\|... - gi\|49480892\|ref\|YP_035384.1\| spore germination protein PB [Bacillus thuringiensis serovar konkukian ... gi\|30254869, gi\|... - gi\|30261255\|ref\|NP_843632.1\| spore germination protein GerPB [Bacillus anthracis str. Ames], gi\|3025... gi\|47501565, gi\|... - gi\|47526417\|ref\|YP_017766.1\| spore germination protein GerPB [Bacillus anthracis str. 'Ames Ancestor... gi\|196025052, gi... - gi\|196044413\|ref\|ZP_03111649.1\| spore germination protein GerPB [Bacillus cereus 03BB108], gi\|196025... gi\|21399070 - ref\|NP_655055.1\| hypothetical protein BA_1695 [Bacillus anthracis str. A2012] gi\|218539976, gi... - gi\|218902344\|ref\|YP_002450178.1\| spore germination protein GerPB [Bacillus cereus AH820], gi\|2185399... gi\|228833383, gi... - gi\|228926286\|ref\|ZP_04089360.1\| hypothetical protein bthur0010_10060 [Bacillus thuringiensis serovar... gi\|228913823, gi... - gi\|228913823\|ref\|ZP_04077448.1\| hypothetical protein bthur0012_10610 [Bacillus thuringiensis serovar... gi\|227816007, gi... - gi\|227816007\|ref\|YP_002816016.1\| spore germination protein GerPB [Bacillus anthracis str. CDC 684], ... gi\|225788383, gi... - gi\|225863099\|ref\|YP_002748477.1\| spore germination protein GerPB [Bacillus cereus 03BB102], gi\|22578... gi\|228600034, gi... - gi\|229183450\|ref\|ZP_04310675.1\| hypothetical protein bcere0004_10230 [Bacillus cereus BGSC 6E1], gi\|... gi\|228662776, gi... - gi\|229120771\|ref\|ZP_04250014.1\| hypothetical protein bcere0016_10800 [Bacillus cereus 95/8201], gi\|2... gi\|228944856, gi... - gi\|228944856\|ref\|ZP_04107219.1\| hypothetical protein bthur0007_10230 [Bacillus thuringiensis serovar... gi\|228932523, gi... - gi\|228932523\|ref\|ZP_04095404.1\| hypothetical protein bthur0009_10010 [Bacillus thuringiensis serovar... gi\|254734102 - gi\|254734102\|ref\|ZP_05191815.1\| spore germination protein GerPB [Bacillus anthracis str. Western Nor... gi\|254725477 - gi\|254725477\|ref\|ZP_05187259.1\| spore germination protein GerPB [Bacillus anthracis str. A1055] gi\|254682684 - gi\|254682684\|ref\|ZP_05146545.1\| spore germination protein GerPB [Bacillus anthracis str. CNEVA-9066] gi\|229265052, gi... - gi\|229600644\|ref\|YP_002865678.1\| spore germination protein GerPB [Bacillus anthracis str. A0248], gi... gi\|254758691 - gi\|254758691\|ref\|ZP_05210718.1\| spore germination protein GerPB [Bacillus anthracis str. Australia 9... gi\|254753594 - gi\|254753594\|ref\|ZP_05205630.1\| spore germination protein GerPB [Bacillus anthracis str. Vollum] gi\|254740254 - gi\|254740254\|ref\|ZP_05197946.1\| spore germination protein GerPB [Bacillus anthracis str. Kruger B]	95.0	[0..1]	[68..1]
gi\|89156475, gi\|... - gi\|89205681\|ref\|ZP_01184249.1\| spore germination protein GerPB [Bacillus weihenstephanensis KBAB4], ... gi\|229171892, gi... - gi\|229171892\|ref\|ZP_04299461.1\| hypothetical protein bcere0006_10090 [Bacillus cereus MM3], gi\|22861... gi\|229160204, gi... - gi\|229160204\|ref\|ZP_04288203.1\| hypothetical protein bcere0009_9990 [Bacillus cereus R309803], gi\|22...	94.0	[0..1]	[68..1]
gi\|228899825, gi... - gi\|228899825\|ref\|ZP_04064071.1\| hypothetical protein bthur0014_10380 [Bacillus thuringiensis IBL 422... gi\|218544086, gi... - gi\|218896183\|ref\|YP_002444594.1\| spore germination protein GerPB [Bacillus cereus G9842], gi\|2185440... gi\|75760169, gi\|... - gi\|75760169\|ref\|ZP_00740227.1\| Spore germination protein PB [Bacillus thuringiensis serovar israelen...	94.0	[0..1]	[68..1]
gi\|89201754, gi\|... - gi\|89201754\|ref\|ZP_01180490.1\| spore germination protein PB [Bacillus cereus subsp. cytotoxis NVH 39...	93.0	[0..1]	[68..1]
gi\|56419224, gi\|... - gi\|56419224\|ref\|YP_146542.1\| spore germination protein [Geobacillus kaustophilus HTA426], gi\|5637906...	87.0	[0..1]	[77..1]

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Predicted Domain #1

Region A:
Residues: [1-77]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFYINQTIQ INYLRLESIS NSSILQIGSA GSIKSLSNLY NTGSYVEPAP EVSGSGQPLQ  60
   61 LQEPDTGSLV PLQPPGR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits