YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213647892
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. J185
Length:	551 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213647892.

Description	E-value	Query Range	Subject Range
gi\|194459241, gi... - gi\|194472877\|ref\|ZP_03078861.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Kent... gi\|197291254, gi... - gi\|197291254\|gb\|EDY30606.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Schwarze... gi\|62182186, gi\|... - gi\|62182186\|ref\|YP_218603.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Cholera... gi\|205333228, gi... - gi\|205333228\|gb\|EDZ19992.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Kentucky... gi\|224585493, gi... - gi\|224585493\|ref\|YP_002639292.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Par... gi\|204321998, gi... - gi\|204928565\|ref\|ZP_03219764.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Javi... gi\|194737852, gi... - gi\|194737852\|ref\|YP_002116629.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Sch...	0.0	[1..551]	[1..551]
gi\|198242134, gi... - gi\|198242134\|ref\|YP_002217654.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Dub... lcl\|NC_016856.1_... - [gene=lldP] [protein=L-lactate permease] [protein_id=YP_005239931.1] [location=3899604..3901259] gi\|197264645, gi... - gi\|197264645\|ref\|ZP_03164719.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Sain... LLDP_SALTY - L-lactate permease OS=Salmonella typhimurium GN=lldP PE=3 SV=1 gi\|195632495, gi... - gi\|195632495\|gb\|EDX50979.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Newport ... gi\|205327790, gi... - gi\|205327790\|gb\|EDZ14554.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar 4,[5],12... LLDP_SALTY - L-lactate permease OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=lldP PE=3 SV=1 gi\|206710732, gi... - gi\|207858929\|ref\|YP_002245580.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Ent... LLDP_SALTY - L-lactate permease OS=Salmonella typhimurium GN=lldP PE=3 SV=1	0.0	[1..551]	[1..551]
gi\|56129839, gi\|... - gi\|56415582\|ref\|YP_152657.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Paratyp...	0.0	[1..551]	[1..551]
gi\|82948068, gi\|... - gi\|83313227\|ref\|YP_423491.1\| L-lactate permease [Magnetospirillum magneticum AMB-1], gi\|82948068\|dbj...	0.0	[1..551]	[205..751]
gi\|82737639, gi\|... - gi\|82737639\|ref\|ZP_00900486.1\| L-lactate permease [Pseudomonas putida F1], gi\|82715292\|gb\|EAP50359.1... gi\|24986489, gi\|... - gi\|26991418\|ref\|NP_746843.1\| L-lactate transport [Pseudomonas putida KT2440], gi\|24986489\|gb\|AAN7030...	0.0	[1..550]	[1..553]
gi\|26110676, gi\|... - gi\|26250247\|ref\|NP_756287.1\| L-lactate permease [Escherichia coli CFT073], gi\|26110676\|gb\|AAN82861.1... gi\|237703374, gi... - gi\|237703374\|ref\|ZP_04533855.1\| L-lactate permease [Escherichia sp. 3_2_53FAA], gi\|226902638\|gb\|EEH8... gi\|91074691, gi\|... - gi\|91213117\|ref\|YP_543103.1\| L-lactate permease [Escherichia coli UTI89], gi\|91074691\|gb\|ABE09572.1\|...	0.0	[1..551]	[8..558]
gi\|95108990 - gi\|95108990\|emb\|CAK13686.1\| L-lactate permease [Pseudomonas entomophila L48] gi\|104780003, gi... - gi\|95108990\|emb\|CAK13686.1\| L-lactate permease [Pseudomonas entomophila L48], gi\|104780003\|ref\|YP_60...	0.0	[1..550]	[1..553]
gi\|238902694, gi... - gi\|238902694\|ref\|YP_002928490.1\| L-lactate permease [Escherichia coli BW2952], gi\|238861673\|gb\|ACR63... EG11961 - L-lactate permease / L-lactate permease; also involved in glycolate uptake LLDP_ECOLI - L-lactate permease - Escherichia coli gi\|75255821, gi\|... - gi\|75255821\|ref\|ZP_00727567.1\| COG1620: L-lactate permease [Escherichia coli E22], gi\|193066112\|ref\|... gi\|75228668, gi\|... - gi\|75228668\|ref\|ZP_00715289.1\| COG1620: L-lactate permease [Escherichia coli B7A], gi\|191168151\|ref\|... gi\|194414438, gi... - gi\|75211360\|ref\|ZP_00711459.1\| COG1620: L-lactate permease [Escherichia coli B171], gi\|194427398\|ref... EG11961 - L-lactate permease / L-lactate permease; also involved in glycolate uptake gi\|75197512, gi\|... - gi\|75197512\|ref\|ZP_00707582.1\| COG1620: L-lactate permease [Escherichia coli HS], gi\|157163087\|ref\|Y... gi\|170018164, gi... - gi\|170018164\|ref\|YP_001723118.1\| L-lactate permease [Escherichia coli ATCC 8739], gi\|169753092\|gb\|AC... gi\|89110408, gi\|... - gi\|89110408\|ref\|AP_004188.1\| L-lactate permease [Escherichia coli str. K-12 substr. W3110], gi\|85676... gi\|124499163, gi... - gi\|124530522\|ref\|ZP_01701149.1\| L-lactate transport [Escherichia coli B], gi\|124499163\|gb\|EAY46657.1... gi\|170083111, gi... - gi\|170083111\|ref\|YP_001732431.1\| L-lactate permease [Escherichia coli str. K-12 substr. DH10B], gi\|1...	0.0	[1..551]	[1..551]
gi\|15833735, gi\|... - gi\|15833735\|ref\|NP_312508.1\| L-lactate permease [Escherichia coli O157:H7 str. Sakai], gi\|13363956\|d... gi\|110345439, gi... - gi\|110643847\|ref\|YP_671577.1\| L-lactate permease [Escherichia coli 536], gi\|110345439\|gb\|ABG71676.1\|... gi\|254795561, gi... - gi\|254795561\|ref\|YP_003080398.1\| L-lactate permease [Escherichia coli O157:H7 str. TW14359], gi\|2545... gi\|253975434, gi... - gi\|254163533\|ref\|YP_003046641.1\| L-lactate permease [Escherichia coli B str. REL606], gi\|253975434\|g... gi\|253771554, gi... - gi\|254290283\|ref\|YP_003056031.1\| L-lactate permease [Escherichia coli BL21(DE3)], gi\|253979590\|gb\|AC... gi\|242379127, gi... - gi\|251786854\|ref\|YP_003001158.1\| hypothetical protein B21_03412 [Escherichia coli BL21], gi\|24237912... gi\|227883773, gi... - gi\|227883773\|ref\|ZP_04001578.1\| L-lactate permease [Escherichia coli 83972], gi\|227839051\|gb\|EEJ4951... gi\|218367447, gi... - gi\|218560678\|ref\|YP_002393591.1\| L-lactate permease [Escherichia coli S88], gi\|218367447\|emb\|CAR0522... gi\|218429454, gi... - gi\|218691890\|ref\|YP_002400102.1\| L-lactate permease [Escherichia coli ED1a], gi\|218429454\|emb\|CAR104... gi\|218697327, gi... - gi\|218697327\|ref\|YP_002404994.1\| L-lactate permease [Escherichia coli 55989], gi\|218354059\|emb\|CAV00... gi\|218702372, gi... - gi\|218702372\|ref\|YP_002410001.1\| L-lactate permease [Escherichia coli IAI39], gi\|218372358\|emb\|CAR20... gi\|218707238, gi... - gi\|218707238\|ref\|YP_002414757.1\| L-lactate permease [Escherichia coli UMN026], gi\|218434335\|emb\|CAR1... LLDP_ECOL6 - L-lactate permease OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=lldP PE=3 SV=1 LLDP_ECO57 - L-lactate permease OS=Escherichia coli O157:H7 GN=lldP PE=3 SV=1 LLDP_ECOL6 - L-lactate permease OS=Escherichia coli O6 GN=lldP PE=3 SV=1 gi\|188018314, gi... - gi\|188018314\|gb\|EDU56436.1\| L-lactate permease [Escherichia coli O157:H7 str. EC4113], gi\|168746847\|... gi\|168753426, gi... - gi\|189359052\|gb\|EDU77471.1\| L-lactate permease [Escherichia coli O157:H7 str. EC4401], gi\|168753426\|... gi\|194425298, gi... - gi\|83588543\|ref\|ZP_00927167.1\| COG1620: L-lactate permease [Escherichia coli 101-1], gi\|194435755\|re... gi\|187429426, gi... - gi\|75179758\|ref\|ZP_00699745.1\| COG1620: L-lactate permease [Shigella boydii BS512], gi\|187732434\|ref... gi\|157079757, gi... - gi\|75188368\|ref\|ZP_00701635.1\| COG1620: L-lactate permease [Escherichia coli E24377A], gi\|157157727\|... gi\|193068480, gi... - gi\|75237545\|ref\|ZP_00721578.1\| COG1620: L-lactate permease [Escherichia coli E110019], gi\|193068480\|... gi\|75242611, gi\|... - gi\|75242611\|ref\|ZP_00726355.1\| COG1620: L-lactate permease [Escherichia coli F11], gi\|191170390\|ref\|... gi\|82545970, gi\|... - gi\|82545970\|ref\|YP_409917.1\| L-lactate permease [Shigella boydii Sb227], gi\|81247381\|gb\|ABB68089.1\| ... gi\|208807170, gi... - gi\|208807170\|ref\|ZP_03249507.1\| L-lactate permease [Escherichia coli O157:H7 str. EC4206], gi\|208726... gi\|208813636, gi... - gi\|208813636\|ref\|ZP_03254965.1\| L-lactate permease [Escherichia coli O157:H7 str. EC4045], gi\|208734... gi\|208739998, gi... - gi\|208819875\|ref\|ZP_03260195.1\| L-lactate permease [Escherichia coli O157:H7 str. EC4042], gi\|208739... gi\|209398657, gi... - gi\|209398657\|ref\|YP_002273085.1\| L-lactate permease [Escherichia coli O157:H7 str. EC4115], gi\|20916... gi\|209921076, gi... - gi\|209921076\|ref\|YP_002295160.1\| L-lactate permease [Escherichia coli SE11], gi\|209914335\|dbj\|BAG794... gi\|215266955, gi... - gi\|215488883\|ref\|YP_002331314.1\| L-lactate permease [Escherichia coli O127:H6 str. E2348/69], gi\|215... gi\|217325907, gi... - gi\|217325907\|ref\|ZP_03441991.1\| L-lactate permease [Escherichia coli O157:H7 str. TW14588], gi\|21732... gi\|194431182, gi... - gi\|83571395\|ref\|ZP_00922835.1\| COG1620: L-lactate permease [Shigella dysenteriae 1012], gi\|194431182... gi\|218362936, gi... - gi\|218556168\|ref\|YP_002389081.1\| L-lactate permease [Escherichia coli IAI1], gi\|218362936\|emb\|CAR005... gi\|168759700, gi... - gi\|189369848\|gb\|EDU88264.1\| L-lactate permease [Escherichia coli O157:H7 str. EC4501], gi\|168759700\|... gi\|115515005, gi... - gi\|117625881\|ref\|YP_859204.1\| L-lactate permease [Escherichia coli APEC O1], gi\|115515005\|gb\|ABJ0308... gi\|189364730, gi... - gi\|189364730\|gb\|EDU83149.1\| L-lactate permease [Escherichia coli O157:H7 str. EC4486], gi\|168766022\|... gi\|12518353, gi\|... - gi\|15804147\|ref\|NP_290186.1\| L-lactate permease [Escherichia coli O157:H7 EDL933], gi\|12518353\|gb\|AA... gi\|168772431, gi... - gi\|187771390\|gb\|EDU35234.1\| L-lactate permease [Escherichia coli O157:H7 str. EC4196], gi\|168772431\|... gi\|209754898, gi... - pir\|\|B86036 L-lactate permease [imported] - Escherichia coli (strain O157:H7, substrain EDL933), pi... gi\|168779758, gi... - gi\|189002433\|gb\|EDU71419.1\| L-lactate permease [Escherichia coli O157:H7 str. EC4076], gi\|168779758\|... gi\|189374346, gi... - gi\|189374346\|gb\|EDU92762.1\| L-lactate permease [Escherichia coli O157:H7 str. EC869], gi\|168785480\|r... gi\|189379877, gi... - gi\|189379877\|gb\|EDU98293.1\| L-lactate permease [Escherichia coli O157:H7 str. EC508], gi\|168797446\|r... gi\|170681119, gi... - gi\|170681119\|ref\|YP_001745905.1\| L-lactate permease [Escherichia coli SMS-3-5], gi\|170518837\|gb\|ACB1... gi\|195935132 - gi\|195935132\|ref\|ZP_03080514.1\| L-lactate permease [Escherichia coli O157:H7 str. EC4024]	0.0	[1..551]	[1..551]
gi\|74314160, gi\|... - gi\|74314160\|ref\|YP_312579.1\| L-lactate permease [Shigella sonnei Ss046], gi\|73857637\|gb\|AAZ90344.1\| ...	0.0	[1..551]	[1..551]

Back

Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLWQQNYDP AGNIWLSSLI ASLPILFFFF ALIKLKLKGY VAASWTVVIA LAVALLFYKM  60
   61 PVDHALASVV YGFFYGLWPI AWIIIAAVFV YKISVKTGQF DIIRSSILSI TPDQRLQMLI 120
  121 VGFCFGAFLE GAAGFG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [137-353]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APVAITAALL VGLGFNPLYA AGLCLIVNTA PVAFGAMGIP ILVAGQVTDL DSFEIGQMVG  60
   61 RQLPFLTIIV LFWIMAIMDG WRGVKETWPA VMVAGGSFAI AQYLSSNFIG PELPDIISSL 120
  121 VSLVCLTLFL KRWQPVRIFR FGDMGASQVD QTLARTRYTT GQIVRAWSPF LFLTATVTLW 180
  181 SIPPFKALFA PGGALYDWVI NVPVPYLDKL VARMPPV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [354-551]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VHEATAYAAV YKFDWFSATG TAILFAALLS IVWLKMKPSA AIQTFGSTLK ELALPIYSIG  60
   61 MVLAFAFISN YSGLSSTLAL ALAHTGSAFT FFSPFLGWLG VFLTGSDTSS NALFASLQAT 120
  121 AAQQIGVSDV LMVAANTTGG VTGKMISPQS IAIACAAVGL VGKESDLFRF TVKHSLIFTC 180
  181 MVGVITTLQA YVLTWMIP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.782	N/A	N/A	d.58.44	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
View	Download	0.753	N/A	N/A	a.74.1	Cyclin-like
View	Download	0.706	N/A	N/A	d.58.19	Bacterial exopeptidase dimerisation domain
View	Download	0.653	N/A	N/A	a.60.11	Hypothetical protein YjbJ
View	Download	0.629	N/A	N/A	a.118.14	FliG

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits