YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|190409080
Organism:	Saccharomyces cerevisiae RM11-1a
Length:	400 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|190409080.

Description	E-value	Query Range	Subject Range
gi\|190409080 - gi\|190409080\|gb\|EDV12345.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] YNL092W - Putative S-adenosylmethionine-dependent methyltransferase of the seven beta-strand family; YNL092W i... CARME_YEAST - Carnosine N-methyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YNL092W PE...	0.0	[1..400]	[1..400]
CG11596-PA - This gene is referred to in FlyBase by the symbol Dmel\CG11596 (CG11596, FBgn0023522). It is a prote... gi\|220955984, gi... - gi\|220955984\|gb\|ACL90535.1\| CG11596-PA [synthetic construct], gi\|220946294\|gb\|ACL85690.1\| CG11596-PA...	0.0	[7..395]	[26..378]
gi\|12846470 - gi\|12846470\|dbj\|BAB27180.1\| unnamed protein product [Mus musculus]	0.0	[6..395]	[47..399]
SPBC1778.07 - methyltransferase N2227 family CARME_SCHPO - Carnosine N-methyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1778.07 ...	0.0	[5..393]	[2..364]
CE16654 - status:Confirmed UniProt:O62483 protein_id:CAB07703.1	0.0	[1..395]	[1..364]
gi\|32404762, gi\|... - gi\|32404762\|ref\|XP_322994.1\| hypothetical protein ( (AL451014) conserved hypothetical protein [Neuro... gi\|85103208 - gi\|85103208\|ref\|XP_961468.1\| hypothetical protein NCU03692 [Neurospora crassa OR74A]	0.0	[54..397]	[8..349]
gi\|7494203 - pir\|\|T18435 hypothetical protein C0390w - malaria parasite (Plasmodium falciparum) gi\|16805183, gi\|... - gi\|3649764\|emb\|CAB11113.1\| N2227-like protein, putative [Plasmodium falciparum 3D7], gi\|16805183\|ref...	2.0E-82	[98..395]	[698..950]

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Predicted Domain #1

Region A:
Residues: [1-319]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDENEFDNQR ENKAVARVII SFLKYEEYAL KEIYNLRVKK WASISDRQKD MVPNYTKYLA  60
   61 NLKAAIIENG KFFRSVAEYA LQSISFEPGE IVQPNDLDMS KTCSLLTQVY REWSAEAISE 120
  121 RNCLNSRLVP FLKTLSPPKA DILIPGCGTG RLLVDLSRMG YNCEGNEFSY HMLLVSQYML 180
  181 NAGLLQNQII IYPFIHCFSH WKKIEDQLSP IKVPDIEAWS SNKGMGSMSI CAGSFVDCYG 240
  241 RNQGTKISSH YTFSRRMQLS RAKAENSKDV VVTNFFIDTG SNILDYLDTI GHVLKPGGIW 300
  301 CNFGPLLYHF ENDHGVETT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [320-400]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YEVNPYSGFQ DKINDYTPLM GLELSSDDII SIATNHLDFE LIRRESGILC GYGRYAGPES  60
   61 CAMPGYMCHY WILKSNPTNE S

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits