YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|194455266, gi...
Organism:	Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188
Length:	136 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|194455266, gi....

Description	E-value	Query Range	Subject Range
gi\|227838999, gi... - gi\|227884247\|ref\|ZP_04002052.1\| YbhQ family protein [Escherichia coli 83972], gi\|227838999\|gb\|EEJ494... gi\|229212832, gi... - gi\|229212832\|ref\|ZP_04339184.1\| hypothetical protein LebuDRAFT_26900 [Leptotrichia buccalis DSM 1135... gi\|238900050, gi... - gi\|238900050\|ref\|YP_002925846.1\| putative inner membrane protein [Escherichia coli BW2952], gi\|23886... gi\|242376583, gi... - gi\|251784310\|ref\|YP_002998614.1\| hypothetical protein B21_00775 [Escherichia coli BL21], gi\|24237658... gi\|253976989, gi... - gi\|254287682\|ref\|YP_003053430.1\| predicted inner membrane protein [Escherichia coli BL21(DE3)], gi\|2... gi\|254160868, gi... - gi\|254160868\|ref\|YP_003043976.1\| predicted inner membrane protein [Escherichia coli B str. REL606], ... gi\|254791985, gi... - gi\|254791985\|ref\|YP_003076822.1\| predicted inner membrane protein [Escherichia coli O157:H7 str. TW1... gi\|74311334, gi\|... - gi\|74311334\|ref\|YP_309753.1\| hypothetical protein SSON_0770 [Shigella sonnei Ss046], gi\|73854811\|gb\|... gi\|81244647, gi\|... - gi\|82543236\|ref\|YP_407183.1\| hypothetical protein SBO_0679 [Shigella boydii Sb227], gi\|81244647\|gb\|A... gi\|194413745, gi... - gi\|75210615\|ref\|ZP_00710763.1\| COG0843: Heme/copper-type cytochrome/quinol oxidases, subunit 1 [Esch... gi\|190900681, gi... - gi\|75227416\|ref\|ZP_00714190.1\| COG0843: Heme/copper-type cytochrome/quinol oxidases, subunit 1 [Esch... gi\|157157548, gi... - gi\|75189832\|ref\|ZP_00703099.1\| COG0843: Heme/copper-type cytochrome/quinol oxidases, subunit 1 [Esch... gi\|157160266, gi... - gi\|75194942\|ref\|ZP_00705012.1\| COG0843: Heme/copper-type cytochrome/quinol oxidases, subunit 1 [Esch... gi\|75257611, gi\|... - gi\|75257611\|ref\|ZP_00729108.1\| COG0843: Heme/copper-type cytochrome/quinol oxidases, subunit 1 [Esch... gi\|188488936, gi... - gi\|75512794\|ref\|ZP_00735286.1\| COG0843: Heme/copper-type cytochrome/quinol oxidases, subunit 1 [Esch... gi\|193069384, gi... - gi\|75236151\|ref\|ZP_00720275.1\| COG0843: Heme/copper-type cytochrome/quinol oxidases, subunit 1 [Esch... gi\|75236199, gi\|... - gi\|75236199\|ref\|ZP_00720316.1\| COG0843: Heme/copper-type cytochrome/quinol oxidases, subunit 1 [Esch... gi\|48890436, gi\|... - gi\|71678187\|ref\|ZP_00675910.1\| hypothetical protein TeryDRAFT_0154 [Trichodesmium erythraeum IMS101]... gi\|68006955, gi\|... - gi\|68056431\|ref\|ZP_00540551.1\| conserved hypothetical protein [Exiguobacterium sibiricum 255-15], gi... YBHQ_ECOL6 - Inner membrane protein YbhQ OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ybhQ P... gi\|24112159, gi\|... - gi\|24112159\|ref\|NP_706669.1\| hypothetical protein SF0741 [Shigella flexneri 2a str. 301], gi\|2405099... YBHQ_ECO57 - Inner membrane protein YbhQ OS=Escherichia coli O157:H7 GN=ybhQ PE=3 SV=1 gi\|194438463, gi... - gi\|83586094\|ref\|ZP_00924731.1\| COG0843: Heme/copper-type cytochrome/quinol oxidases, subunit 1 [Esch... gi\|30040521, gi\|... - gi\|30062276\|ref\|NP_836447.1\| hypothetical protein S0782 [Shigella flexneri 2a str. 2457T], gi\|300405... gi\|75178419, gi\|... - gi\|75178419\|ref\|ZP_00698473.1\| COG0843: Heme/copper-type cytochrome/quinol oxidases, subunit 1 [Shig... gi\|12513783, gi\|... - gi\|15800542\|ref\|NP_286554.1\| hypothetical protein Z1010 [Escherichia coli O157:H7 EDL933], gi\|125137... EG13673 - inner membrane protein / Inner membrane protein, function unknown gi\|218360143, gi... - gi\|218553375\|ref\|YP_002386288.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|218549642, gi... - gi\|218549642\|ref\|YP_002383433.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|218694265, gi... - gi\|218694265\|ref\|YP_002401932.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|218426141, gi... - gi\|218688577\|ref\|YP_002396789.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|218431266, gi... - gi\|218704169\|ref\|YP_002411688.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|114845286, gi... - gi\|114845286\|ref\|ZP_01455700.1\| conserved hypothetical protein [Thermoanaerobacter ethanolicus X514]... gi\|118010267, gi... - gi\|118065709\|ref\|ZP_01533978.1\| conserved hypothetical protein [Roseiflexus castenholzii DSM 13941],... YBHQ_SHIFL - Inner membrane protein YbhQ OS=Shigella flexneri GN=ybhQ PE=3 SV=1 gi\|124527011, gi... - gi\|124527011\|ref\|ZP_01698848.1\| conserved hypothetical protein [Escherichia coli B], gi\|124501356\|gb... EG13673 - inner membrane protein / Inner membrane protein, function unknown gi\|189356295, gi... - gi\|189356295\|gb\|EDU74714.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4401], gi\|168... gi\|188014046, gi... - gi\|188014046\|gb\|EDU52168.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4113], gi\|168... YBHQ_ECOLI - Inner membrane protein ybhQ - Escherichia coli gi\|110640995, gi... - gi\|110640995\|ref\|YP_668723.1\| hypothetical protein ECP_0805 [Escherichia coli 536], gi\|110342587\|gb\|... gi\|208727352, gi... - gi\|208807551\|ref\|ZP_03249888.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4206], gi... gi\|110614340, gi... - gi\|110804792\|ref\|YP_688312.1\| hypothetical protein SFV_0774 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|195936831 - gi\|195936831\|ref\|ZP_03082213.1\| inner membrane protein [Escherichia coli O157:H7 str. EC4024] gi\|208822098, gi... - gi\|208822098\|ref\|ZP_03262417.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4042], gi... gi\|208731565, gi... - gi\|208814917\|ref\|ZP_03256096.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4045], gi... gi\|209918037, gi... - gi\|209918037\|ref\|YP_002292121.1\| hypothetical protein ECSE_0846 [Escherichia coli SE11], gi\|20991129... gi\|89203325, gi\|... - gi\|89203325\|ref\|ZP_01182005.1\| conserved hypothetical protein [Bacillus cereus subsp. cytotoxis NVH ... gi\|209158675, gi... - gi\|209397275\|ref\|YP_002269460.1\| hypothetical protein ECH74115_0940 [Escherichia coli O157:H7 str. E... gi\|4062348, gi\|8... - gi\|89107642\|ref\|AP_001422.1\| predicted inner membrane protein [Escherichia coli str. K-12 substr. W3... gi\|217321646, gi... - gi\|217325425\|ref\|ZP_03441509.1\| putative membrane protein [Escherichia coli O157:H7 str. TW14588], g... gi\|15830123, gi\|... - gi\|15830123\|ref\|NP_308896.1\| hypothetical protein ECs0869 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|215485879, gi... - gi\|215485879\|ref\|YP_002328310.1\| predicted inner membrane protein [Escherichia coli O127:H6 str. E23... gi\|168767292, gi... - gi\|189363527\|gb\|EDU81946.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4486], gi\|168... gi\|168764305, gi... - gi\|189365674\|gb\|EDU84090.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4501], gi\|168... gi\|189002955, gi... - gi\|189002955\|gb\|EDU71941.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4076], gi\|168... gi\|168777229, gi... - gi\|187767507\|gb\|EDU31351.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4196], gi\|168... gi\|189377711, gi... - gi\|189377711\|gb\|EDU96127.1\| putative membrane protein [Escherichia coli O157:H7 str. EC508], gi\|1687... gi\|168787005, gi... - gi\|189373008\|gb\|EDU91424.1\| putative membrane protein [Escherichia coli O157:H7 str. EC869], gi\|1687... gi\|170080450, gi... - gi\|170080450\|ref\|YP_001729770.1\| inner membrane protein [Escherichia coli str. K-12 substr. DH10B], ... gi\|169755781, gi... - gi\|170020853\|ref\|YP_001725807.1\| hypothetical protein EcolC_2852 [Escherichia coli ATCC 8739], gi\|16... YBHQ_ECOL6 - Inner membrane protein ybhQ OS=Escherichia coli O6 GN=ybhQ PE=3 SV=1	7.0E-48	[1..136]	[1..136]
gi\|81240284, gi\|... - gi\|82776136\|ref\|YP_402483.1\| hypothetical protein SDY_0812 [Shigella dysenteriae Sd197], gi\|81240284... gi\|218699163, gi... - gi\|218699163\|ref\|YP_002406792.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|170519867, gi... - gi\|170682149\|ref\|YP_001742894.1\| hypothetical protein EcSMS35_0815 [Escherichia coli SMS-3-5], gi\|17...	1.0E-47	[1..136]	[1..136]
gi\|115512097, gi... - gi\|117622973\|ref\|YP_851886.1\| hypothetical protein APECO1_1299 [Escherichia coli APEC O1], gi\|115512... gi\|237707250, gi... - gi\|237707250\|ref\|ZP_04537731.1\| inner membrane protein ybhQ [Escherichia sp. 3_2_53FAA], gi\|22689846... gi\|218364465, gi... - gi\|218557696\|ref\|YP_002390609.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|91071397, gi\|... - gi\|91209823\|ref\|YP_539809.1\| hypothetical protein UTI89_C0792 [Escherichia coli UTI89], gi\|91071397\|...	1.0E-47	[1..136]	[1..136]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKWQQRVRVA TGLGCWQIML HLLVVAMLVI GWMSGTLVRV GLGLCVLYGV TVLLMLALQR  60
   61 HHEQRWRDVA DVLEELTTTW YFGTALIVLW LLSRVLQNNV LLALAGLAIL AGPAVVSLLA 120
  121 KDKKLHHFAS KHRIRR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits