YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|224503306
Organism:	Listeria monocytogenes FSL R2-561
Length:	475 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|224503306.

Description	E-value	Query Range	Subject Range
gi\|254900727, gi... - gi\|254900727\|ref\|ZP_05260651.1\| amidophosphoribosyltransferase [Listeria monocytogenes J0161], gi\|15... gi\|153198059, gi... - gi\|254832513\|ref\|ZP_05237168.1\| amidophosphoribosyltransferase [Listeria monocytogenes 10403S], gi\|1... gi\|153191235, gi... - gi\|254913788\|ref\|ZP_05263800.1\| amidophosphoribosyltransferase [Listeria monocytogenes J2818], gi\|15... gi\|254872937, gi... - gi\|254872937\|ref\|ZP_05245647.1\| amidophosphoribosyltransferase [Listeria monocytogenes FSL N1-017], ... gi\|133729816, gi... - gi\|254829479\|ref\|ZP_05234166.1\| amidophosphoribosyltransferase [Listeria monocytogenes FSL N3-165], ... gi\|254932786, gi... - gi\|254932786\|ref\|ZP_05266145.1\| amidophosphoribosyltransferase [Listeria monocytogenes HPB2262], gi\|... gi\|47017925, gi\|... - gi\|47093694\|ref\|ZP_00231447.1\| amidophosphoribosyltransferase [Listeria monocytogenes str. 4b H7858]... gi\|217333354, gi... - gi\|217964084\|ref\|YP_002349762.1\| amidophosphoribosyltransferase [Listeria monocytogenes HCC23], gi\|2... gi\|46907998, gi\|... - gi\|46907998\|ref\|YP_014387.1\| amidophosphoribosyltransferase [Listeria monocytogenes str. 4b F2365], ... gi\|224499513 - gi\|224499513\|ref\|ZP_03667862.1\| amidophosphoribosyltransferase [Listeria monocytogenes Finland 1988] gi\|47095695, gi\|... - gi\|47095695\|ref\|ZP_00233302.1\| amidophosphoribosyltransferase [Listeria monocytogenes str. 1/2a F685... gi\|254853678 - gi\|254853678\|ref\|ZP_05243026.1\| amidophosphoribosyltransferase [Listeria monocytogenes FSL R2-503] gi\|254825987 - gi\|254825987\|ref\|ZP_05230988.1\| amidophosphoribosyltransferase [Listeria monocytogenes FSL J1-194] gi\|254938175 - gi\|254938175\|ref\|ZP_05269872.1\| amidophosphoribosyltransferase [Listeria monocytogenes F6900] gi\|254880140 - gi\|254880140\|ref\|ZP_05252850.1\| amidophosphoribosyltransferase [Listeria monocytogenes FSL J2-071] gi\|255521811 - gi\|255521811\|ref\|ZP_05389048.1\| amidophosphoribosyltransferase [Listeria monocytogenes FSL J1-175] gi\|255025923 - gi\|255025923\|ref\|ZP_05297909.1\| amidophosphoribosyltransferase [Listeria monocytogenes FSL J2-003]	433.0	[0..1]	[475..1]
gi\|25286957, gi\|... - pir\|\|AF1667 glutamine phosphoribosylpyrophosphate amidotransferase [imported] - Listeria innocua (st... gi\|16800946 - gi\|16800946\|ref\|NP_471214.1\| amidophosphoribosyltransferase [Listeria innocua Clip11262]	432.0	[0..1]	[475..1]
gi\|152022867, gi... - gi\|89200081\|ref\|ZP_01178837.1\| Amidophosphoribosyl transferase [Bacillus cereus subsp. cytotoxis NVH...	424.0	[0..1]	[472..1]
gi\|89157431, gi\|... - gi\|89204804\|ref\|ZP_01183380.1\| Amidophosphoribosyl transferase [Bacillus weihenstephanensis KBAB4], ... gi\|83316471, gi\|... - gi\|83316504\|gb\|ABC02429.1\| PurF [Bacillus weihenstephanensis], gi\|83316471\|gb\|ABC02410.1\| PurF [Baci...	423.0	[0..1]	[472..1]
gi\|170126319, gi... - gi\|170708740\|ref\|ZP_02899177.1\| amidophosphoribosyltransferase [Bacillus anthracis str. A0389], gi\|1... gi\|229604189, gi... - gi\|229604189\|ref\|YP_002864913.1\| amidophosphoribosyltransferase [Bacillus anthracis str. A0248], gi\|... gi\|170688393, gi... - gi\|170688393\|ref\|ZP_02879602.1\| amidophosphoribosyltransferase [Bacillus anthracis str. A0465], gi\|1... gi\|254686679 - gi\|254686679\|ref\|ZP_05150537.1\| amidophosphoribosyltransferase [Bacillus anthracis str. CNEVA-9066] gi\|190561263, gi... - gi\|190567476\|ref\|ZP_03020389.1\| amidophosphoribosyltransferase [Bacillus anthracis Tsiankovskii-I], ... gi\|254724755 - gi\|254724755\|ref\|ZP_05186538.1\| amidophosphoribosyltransferase [Bacillus anthracis str. A1055] gi\|172081275, gi... - gi\|177653695\|ref\|ZP_02935834.1\| amidophosphoribosyltransferase [Bacillus anthracis str. A0174], gi\|1... gi\|254739096 - gi\|254739096\|ref\|ZP_05196798.1\| amidophosphoribosyltransferase [Bacillus anthracis str. Western Nort... gi\|196045341, gi... - gi\|196045341\|ref\|ZP_03112573.1\| amidophosphoribosyltransferase [Bacillus cereus 03BB108], gi\|1960239... gi\|254742282 - gi\|254742282\|ref\|ZP_05199968.1\| amidophosphoribosyltransferase [Bacillus anthracis str. Kruger B] gi\|195992646, gi... - gi\|196034603\|ref\|ZP_03102011.1\| amidophosphoribosyltransferase [Bacillus cereus W], gi\|195992646\|gb\|... gi\|254756058 - gi\|254756058\|ref\|ZP_05208087.1\| amidophosphoribosyltransferase [Bacillus anthracis str. Vollum] gi\|254761875 - gi\|254761875\|ref\|ZP_05213724.1\| amidophosphoribosyltransferase [Bacillus anthracis str. Australia 94... gi\|218539570, gi... - gi\|218901485\|ref\|YP_002449319.1\| amidophosphoribosyltransferase [Bacillus cereus AH820], gi\|21853957... gi\|164712850, gi... - gi\|165871366\|ref\|ZP_02216014.1\| amidophosphoribosyltransferase [Bacillus anthracis str. A0488], gi\|1... gi\|167640156, gi... - gi\|167640156\|ref\|ZP_02398423.1\| amidophosphoribosyltransferase [Bacillus anthracis str. A0193], gi\|1... gi\|167530514, gi... - gi\|167634200\|ref\|ZP_02392522.1\| amidophosphoribosyltransferase [Bacillus anthracis str. A0442], gi\|1... gi\|30260468, gi\|... - gi\|30260468\|ref\|NP_842845.1\| amidophosphoribosyltransferase [Bacillus anthracis str. Ames], gi\|30253... gi\|47525558, gi\|... - gi\|47525558\|ref\|YP_016907.1\| amidophosphoribosyltransferase [Bacillus anthracis str. 'Ames Ancestor'... gi\|65317720, gi\|... - gi\|65317720\|ref\|ZP_00390679.1\| COG0034: Glutamine phosphoribosylpyrophosphate amidotransferase [Baci... gi\|51978419, gi\|... - gi\|52144950\|ref\|YP_081879.1\| amidophosphoribosyltransferase [Bacillus cereus E33L], gi\|51978419\|gb\|A... gi\|49177237, gi\|... - gi\|49183310\|ref\|YP_026562.1\| amidophosphoribosyltransferase [Bacillus anthracis str. Sterne], gi\|491... gi\|225788861, gi... - gi\|225862334\|ref\|YP_002747712.1\| amidophosphoribosyltransferase [Bacillus cereus 03BB102], gi\|225788... gi\|49330644, gi\|... - gi\|49479088\|ref\|YP_034617.1\| amidophosphoribosyltransferase [Bacillus thuringiensis serovar konkukia... gi\|227812960, gi... - gi\|227812960\|ref\|YP_002812969.1\| amidophosphoribosyltransferase [Bacillus anthracis str. CDC 684], g...	423.0	[0..1]	[472..1]
gi\|42779405, gi\|... - gi\|42779405\|ref\|NP_976652.1\| amidophosphoribosyltransferase [Bacillus cereus ATCC 10987], gi\|4273532...	422.0	[0..1]	[472..1]
gi\|47569939, gi\|... - gi\|47569939\|ref\|ZP_00240604.1\| amidophosphoribosyltransferase [Bacillus cereus G9241], gi\|47553385\|g... gi\|29894078, gi\|... - gi\|30018538\|ref\|NP_830169.1\| amidophosphoribosyltransferase [Bacillus cereus ATCC 14579], gi\|2989407... gi\|206736523, gi... - gi\|206967603\|ref\|ZP_03228559.1\| amidophosphoribosyltransferase [Bacillus cereus AH1134], gi\|20673652...	422.0	[0..1]	[472..1]
gi\|74492594, gi\|... - gi\|75759927\|ref\|ZP_00739998.1\| Amidophosphoribosyltransferase [Bacillus thuringiensis serovar israel...	421.0	[0..1]	[472..7]
gi\|48825158 - ref\|ZP_00286442.1\| COG0034: Glutamine phosphoribosylpyrophosphate amidotransferase [Enterococcus fae... gi\|69246319, gi\|... - gi\|69246319\|ref\|ZP_00603892.1\| Amidophosphoribosyl transferase [Enterococcus faecium DO], gi\|6819533...	413.0	[0..1]	[474..1]
gi\|25286942 - pir\|\|F83728 phosphoribosylpyrophosphate amidotransferase purF [imported] - Bacillus halodurans (stra... gi\|10173244, gi\|... - gi\|15613193\|ref\|NP_241496.1\| amidophosphoribosyltransferase [Bacillus halodurans C-125], gi\|10173244...	410.0	[0..1]	[461..1]

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Predicted Domain #1

Region A:
Residues: [1-475]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLAEVKGLNE ECGIFGIWDH PNAAEITYYG LHSLQHRGQE GAGIVSTDGE ILKGHRNLGL  60
   61 LADVFKHGEL DDLKGKAAIG HVRYATAGQK NLGNVQPFLF HFHSSSLALA HNGNLVNAKS 120
  121 LRRELEEEGA IFQTSSDTEV LAHLIKRSHT GDFVEDLKVA LNKVKGGFAY MLLTEDTMYA 180
  181 ALDPNGFRPL SIGRIGDSYV VASETCAFET VGAEFVRDVE PGELIIINDD GLRIEKFTEN 240
  241 VKHSICSMEY IYFARPDSNI AGINVHSARK RSGKRLAKEA FIDADVVTGV PDSSISAAIG 300
  301 YAEEAGLPYE LGLIKNRYVA RTFIQPSQEL REQGVRMKLS AVRGVVEGKR VVMIDDSIVR 360
  361 GTTSKRIVQL LREAGAAEVH VRIASPPLAY PCFYGIDIQT RNELIASNYS VDEICRIIGA 420
  421 DSLEYLSEEG LVDSIGRPYP NEPYGGLCMA YFNGDYPTPL YDYEAEYLAS LEAEK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	109.0
Match:	1gph1
Description:	Glutamine PRPP amidotransferase, C-terminal domain; Glutamine PRPP amidotransferase, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transferase activity	2.73727660668741	bayes_pls_golite062009
transferase activity, transferring pentosyl groups	2.53679639481311	bayes_pls_golite062009
uracil phosphoribosyltransferase activity	2.36237864658341	bayes_pls_golite062009
catalytic activity	2.30431811394775	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	2.21367942706564	bayes_pls_golite062009
amidophosphoribosyltransferase activity	1.6596316647688	bayes_pls_golite062009
ribose phosphate diphosphokinase activity	1.51875493459374	bayes_pls_golite062009
adenine phosphoribosyltransferase activity	0.985266832225609	bayes_pls_golite062009
diphosphotransferase activity	0.749909396904601	bayes_pls_golite062009
hypoxanthine phosphoribosyltransferase activity	0.625087274084001	bayes_pls_golite062009
ligase activity	0.204093345072151	bayes_pls_golite062009
nucleic acid binding	0.202128134374461	bayes_pls_golite062009
orotate phosphoribosyltransferase activity	0.148898393751978	bayes_pls_golite062009
endopeptidase activity	0.0940838340168359	bayes_pls_golite062009
peptidase activity	0.0898497842822991	bayes_pls_golite062009
transcription regulator activity	0.057753538747651	bayes_pls_golite062009
binding	0.0515528196477861	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	0.012663147802059	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: