Protein: | gi|190405000 |
Organism: | Saccharomyces cerevisiae RM11-1a |
Length: | 889 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|190405000.
Description | E-value | Query Range |
Subject Range |
|
0.0 | [1..889] | [1..889] |
|
0.0 | [171..872] | [182..942] |
|
0.0 | [114..887] | [107..845] |
|
0.0 | [206..872] | [165..833] |
|
0.0 | [120..602] | [47..486] |
|
1.0E-93 | [595..887] | [16..304] |
|
4.0E-61 | [684..887] | [1..199] |
|
0.003 | [252..635] | [1845..2259] |
Region A: Residues: [1-41] |
1 11 21 31 41 51 | | | | | | 1 MSISETPHNK SQGLQKAAGR PKIVVPEGSP SRNSDSGSFT I |
Region B: Residues: [98-245] |
1 11 21 31 41 51 | | | | | | 1 THSGSMDFSP LGNNSIYEIV MNTRRKNWLN YPTVADIPQV SLSKNDLDDH WKTHVIEYVK 60 61 NIKSDYQIFQ STNNIRNMNQ MEQLKELREG ENMHEESFEA NLRQGDAELI NSIPDFYFSD 120 121 KFQLDNPRTF HKVLDAIDLF LTKLDMKR |
Detection Method: | |
Confidence: | 7.08 |
Match: | 3btaA |
Description: | Botulinum neurotoxin |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [42-97] |
1 11 21 31 41 51 | | | | | | 1 EGDTSLNDDL LSISGSVTPR ARRSSRLSLD SITPRRSFDS RTLSVANSRS FGFENE |
Detection Method: | |
Confidence: | 7.08 |
Match: | 3btaA |
Description: | Botulinum neurotoxin |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
binding | 2.3468119246528 | bayes_pls_golite062009 |
cytoskeletal protein binding | 2.28760768499625 | bayes_pls_golite062009 |
actin binding | 2.06460396235438 | bayes_pls_golite062009 |
protein binding | 1.84956862293123 | bayes_pls_golite062009 |
syntaxin binding | 1.83513067528946 | bayes_pls_golite062009 |
SNARE binding | 1.71642476140333 | bayes_pls_golite062009 |
actin filament binding | 1.58451318432641 | bayes_pls_golite062009 |
integrin binding | 1.00016212897166 | bayes_pls_golite062009 |
protein complex binding | 0.895042950779324 | bayes_pls_golite062009 |
receptor binding | 0.497776738275844 | bayes_pls_golite062009 |
Region A: Residues: [246-417] |
1 11 21 31 41 51 | | | | | | 1 QAERDEAFSE LRDRLNDFLD IVETLLVTEI SKSSHKFFHA LSEVDNIQKR ALDTMSELKE 60 61 LAQNIKTIDA ENIRKKISHL EMIFKRKNVE KLEQGLLQAK LVLNKTDECK SMYEENKLDN 120 121 CLELIKSIDY LIKGDDSINE DVQSWTRCWP YKLSNLRTIP ALSATREFLT NM |
Detection Method: | |
Confidence: | 8.47 |
Match: | 1hciA |
Description: | alpha-actinin |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [418-556] |
1 11 21 31 41 51 | | | | | | 1 KIEIGGKFSL QLSILLIDDL RSFCKSIKPK ETLHRIQTGS NDKKQTIFTD NFSSKITELI 60 61 VRLNRCEELT SAFDLYREKS ITELKSIIKI YLPTENAHAD NNHDEKHLNN GSTSGSKLSR 120 121 LIKEQTPAEF QSMLVNIFT |
Detection Method: | |
Confidence: | 8.47 |
Match: | 1hciA |
Description: | alpha-actinin |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [557-693] |
1 11 21 31 41 51 | | | | | | 1 HALEALRRLY GHQKLLLDIS LNELASVKSP NENQHNMITQ LDIRTGINEI IRIIQLRTGK 60 61 IIAVRRELNL SLRYDYFLKF YAICVIFIQE CEVLSGEFLT KYLSNVLASQ IKHYANAQSS 120 121 KNYRNIKKKI DAEEWIP |
Detection Method: | |
Confidence: | 8.47 |
Match: | 1hciA |
Description: | alpha-actinin |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [694-889] |
1 11 21 31 41 51 | | | | | | 1 YIVDSSIQSD VNDIVSSIDI DPLSWTTILD MVGGSHDCEN GRSEDKEKDE GNETYQGHRK 60 61 SVVVGDKTFV ASSSLLATIE VIKELMVLSI NLPSIYLSNF EKLCYDALQY YNSSAMASVT 120 121 QPGNSLLKTG RNLSIMGESL DCLAEFVIIV QRFYQRLSNS NRDFEPFDAS HYTTLLGQFQ 180 181 ASSNKIYMAN APPPPV |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
View | Download | 0.226 | 0.963 | Golgi to vacuole transport | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |