YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|167424194, gi...
Organism:	Yersinia pestis biovar Mediaevalis str. K1973002
Length:	428 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|167424194, gi....

Description	E-value	Query Range	Subject Range
Q66CF9\|Q66CF9_YERPS - Putative paraquat-inducible protein A - Yersinia pseudotuberculosis gi\|51589066, gi\|... - gi\|51595784\|ref\|YP_069975.1\| putative paraquat-inducible protein A [Yersinia pseudotuberculosis IP 3... gi\|170024864, gi... - gi\|170024864\|ref\|YP_001721369.1\| PqiA family integral membrane protein [Yersinia pseudotuberculosis ...	0.0	[1..428]	[1..428]
gi\|77956754 - gi\|77956754\|ref\|ZP_00820834.1\| COG2995: Uncharacterized paraquat-inducible protein A [Yersinia berco...	0.0	[1..428]	[1..431]
gi\|15800809, gi\|... - gi\|15800809\|ref\|NP_286825.1\| paraquat-inducible protein A [Escherichia coli O157:H7 EDL933], gi\|1251... gi\|218700531, gi... - gi\|218700531\|ref\|YP_002408160.1\| paraquat-inducible membrane protein A [Escherichia coli IAI39], gi\|... gi\|217326375, gi... - gi\|217326375\|ref\|ZP_03442459.1\| paraquat-inducible protein A [Escherichia coli O157:H7 str. TW14588]... gi\|170518506, gi... - gi\|170680788\|ref\|YP_001744219.1\| paraquat-inducible protein A [Escherichia coli SMS-3-5], gi\|1705185... gi\|189372598, gi... - gi\|189372598\|gb\|EDU91014.1\| paraquat-inducible protein A [Escherichia coli O157:H7 str. EC869], gi\|1... gi\|187768378, gi... - gi\|187768378\|gb\|EDU32222.1\| paraquat-inducible protein A [Escherichia coli O157:H7 str. EC4196], gi\|... gi\|168762911, gi... - gi\|189366777\|gb\|EDU85193.1\| paraquat-inducible protein A [Escherichia coli O157:H7 str. EC4501], gi\|... gi\|209157472, gi... - gi\|209396072\|ref\|YP_002269619.1\| paraquat-inducible protein A [Escherichia coli O157:H7 str. EC4115]... gi\|208738264, gi... - gi\|208822779\|ref\|ZP_03263098.1\| paraquat-inducible protein A [Escherichia coli O157:H7 str. EC4042],... gi\|208816359, gi... - gi\|208816359\|ref\|ZP_03257538.1\| paraquat-inducible protein A [Escherichia coli O157:H7 str. EC4045],... gi\|82776241, gi\|... - gi\|82776241\|ref\|YP_402590.1\| paraquat-inducible protein A [Shigella dysenteriae Sd197], gi\|81240389\|... gi\|208808193, gi... - gi\|208808193\|ref\|ZP_03250530.1\| paraquat-inducible protein A [Escherichia coli O157:H7 str. EC4206],... gi\|13360494, gi\|... - gi\|15830288\|ref\|NP_309061.1\| paraquat-inducible protein A [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|168758976, gi... - gi\|189354324\|gb\|EDU72743.1\| paraquat-inducible protein A [Escherichia coli O157:H7 str. EC4401], gi\|... gi\|13360494, gi\|... - gi\|15830288\|ref\|NP_309061.1\| paraquat-inducible protein A [Escherichia coli O157:H7], gi\|13360494\|db... gi\|25321509, gi\|... - pir\|\|H85621 paraquat-inducible protein A [imported] - Escherichia coli (strain O157:H7, substrain E... gi\|254792150, gi... - gi\|254792150\|ref\|YP_003076987.1\| paraquat-inducible membrane protein A [Escherichia coli O157:H7 str...	0.0	[12..423]	[6..417]
PQIA_ECOLI - Paraquat-inducible protein A - Escherichia coli EG12965 - paraquat-inducible, SoxRS-regulated inner membrane protein / Paraquat-inducible, SoxRS-regulated inn... gi\|169888443, gi... - gi\|170080608\|ref\|YP_001729928.1\| paraquat-inducible membrane protein A [Escherichia coli str. K-12 s... gi\|170020649, gi... - gi\|170020649\|ref\|YP_001725603.1\| PqiA family integral membrane protein [Escherichia coli ATCC 8739],... PQIA_ECOL6 - Paraquat-inducible protein A OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=pqiA ... gi\|218553537, gi... - gi\|218553537\|ref\|YP_002386450.1\| paraquat-inducible membrane protein A [Escherichia coli IAI1], gi\|2... gi\|30062487, gi\|... - gi\|30062487\|ref\|NP_836658.1\| paraquat-inducible protein A [Shigella flexneri 2a str. 2457T], gi\|3004... gi\|209918202, gi... - gi\|209918202\|ref\|YP_002292286.1\| paraquat-inducible protein A [Escherichia coli SE11], gi\|209911461\|... gi\|218351157, gi... - gi\|218694425\|ref\|YP_002402092.1\| paraquat-inducible membrane protein A [Escherichia coli 55989], gi\|... gi\|218426350, gi... - gi\|218688786\|ref\|YP_002396998.1\| paraquat-inducible membrane protein A [Escherichia coli ED1a], gi\|2... gi\|227884091, gi... - gi\|227884091\|ref\|ZP_04001896.1\| paraquat-inducible membrane protein A [Escherichia coli 83972], gi\|2... gi\|238900208, gi... - gi\|238900208\|ref\|YP_002926004.1\| paraquat-inducible membrane protein A [Escherichia coli BW2952], gi... gi\|110342731, gi... - gi\|110641139\|ref\|YP_668869.1\| paraquat-inducible protein A [Escherichia coli 536], gi\|110342731\|gb\|A... gi\|251784492, gi... - gi\|251784492\|ref\|YP_002998796.1\| hypothetical protein B21_00961 [Escherichia coli BL21], gi\|24237676... gi\|110804966, gi... - gi\|110804966\|ref\|YP_688486.1\| paraquat-inducible protein A [Shigella flexneri 5 str. 8401], gi\|11061... gi\|254287872, gi... - gi\|254287872\|ref\|YP_003053620.1\| paraquat-inducible membrane protein A [Escherichia coli BL21(DE3)],... gi\|253972965, gi... - gi\|254161064\|ref\|YP_003044172.1\| paraquat-inducible membrane protein A [Escherichia coli B str. REL6... gi\|89107800, gi\|... - gi\|89107800\|ref\|AP_001580.1\| paraquat-inducible membrane protein A [Escherichia coli str. K-12 subst... EG12965 - paraquat-inducible, SoxRS-regulated inner membrane protein / Paraquat-inducible, SoxRS-regulated inn... gi\|188493098, gi... - gi\|75510993\|ref\|ZP_00733747.1\| COG2995: Uncharacterized paraquat-inducible protein A [Escherichia co... gi\|81246137, gi\|... - gi\|82544726\|ref\|YP_408673.1\| paraquat-inducible protein A [Shigella boydii Sb227], gi\|81246137\|gb\|AB... PQIA_SHIFL - Paraquat-inducible protein A OS=Shigella flexneri GN=pqiA PE=3 SV=1 gi\|24112363, gi\|... - gi\|24112363\|ref\|NP_706873.1\| paraquat-inducible protein A [Shigella flexneri 2a str. 301], gi\|240512... PQIA_ECOL6 - Paraquat-inducible protein A OS=Escherichia coli O6 GN=pqiA PE=2 SV=1 gi\|75190019, gi\|... - gi\|75190019\|ref\|ZP_00703286.1\| COG2995: Uncharacterized paraquat-inducible protein A [Escherichia co... gi\|157066151, gi... - gi\|75195140\|ref\|ZP_00705210.1\| COG2995: Uncharacterized paraquat-inducible protein A [Escherichia co... gi\|75207995, gi\|... - gi\|75207995\|ref\|ZP_00708416.1\| COG2995: Uncharacterized paraquat-inducible protein A [Escherichia co... gi\|75229844, gi\|... - gi\|75229844\|ref\|ZP_00716367.1\| COG2995: Uncharacterized paraquat-inducible protein A [Escherichia co... gi\|190907633, gi... - gi\|75241018\|ref\|ZP_00724907.1\| COG2995: Uncharacterized paraquat-inducible protein A [Escherichia co... gi\|193064632, gi... - gi\|75257332\|ref\|ZP_00728848.1\| COG2995: Uncharacterized paraquat-inducible protein A [Escherichia co... gi\|124530104, gi... - gi\|124530104\|ref\|ZP_01700874.1\| integral membrane protein, PqiA family [Escherichia coli B], gi\|1244...	0.0	[12..423]	[6..417]
gi\|91071619, gi\|... - gi\|91210045\|ref\|YP_540031.1\| paraquat-inducible protein A [Escherichia coli UTI89], gi\|91071619\|gb\|A... gi\|218557848, gi... - gi\|218557848\|ref\|YP_002390761.1\| paraquat-inducible membrane protein A [Escherichia coli S88], gi\|21... gi\|226898277, gi... - gi\|237707067\|ref\|ZP_04537548.1\| paraquat-inducible protein A [Escherichia sp. 3_2_53FAA], gi\|2268982... gi\|117623161, gi... - gi\|117623161\|ref\|YP_852074.1\| paraquat-inducible protein A [Escherichia coli APEC O1], gi\|115512285\|...	0.0	[12..423]	[6..417]
gi\|187428005, gi... - gi\|75178236\|ref\|ZP_00698290.1\| COG2995: Uncharacterized paraquat-inducible protein A [Shigella boydi...	0.0	[12..423]	[6..417]
gi\|74311507, gi\|... - gi\|74311507\|ref\|YP_309926.1\| paraquat-inducible protein A [Shigella sonnei Ss046], gi\|73854984\|gb\|AA...	0.0	[12..423]	[6..417]
gi\|194435234, gi... - gi\|83568922\|ref\|ZP_00920390.1\| COG2995: Uncharacterized paraquat-inducible protein A [Shigella dysen...	0.0	[12..423]	[6..417]
gi\|197936660, gi... - gi\|198242144\|ref\|YP_002214996.1\| paraquat-inducible protein A [Salmonella enterica subsp. enterica s... gi\|199602812, gi... - gi\|200390367\|ref\|ZP_03216978.1\| paraquat-inducible protein A [Salmonella enterica subsp. enterica se... gi\|205271999, gi... - gi\|205352218\|ref\|YP_002226019.1\| putative inner membrane protein [Salmonella enterica subsp. enteric... gi\|205359283, gi... - gi\|205359283\|ref\|ZP_02668783.2\| paraquat-inducible protein A [Salmonella enterica subsp. enterica se... lcl\|NC_016856.1_... - [gene=pqiA] [protein=paraquat-inducible protein A] [protein_id=YP_005236795.1] [location=1112272..11... gi\|194446385, gi... - gi\|194446385\|ref\|YP_002040266.1\| paraquat-inducible protein A [Salmonella enterica subsp. enterica s... gi\|194410142, gi... - gi\|194451838\|ref\|YP_002045065.1\| paraquat-inducible protein A [Salmonella enterica subsp. enterica s... gi\|197211644, gi... - gi\|197247941\|ref\|YP_002145933.1\| paraquat-inducible protein A [Salmonella enterica subsp. enterica s... gi\|197240970, gi... - gi\|197262715\|ref\|ZP_03162789.1\| paraquat-inducible protein A [Salmonella enterica subsp. enterica se... gi\|161364107, gi... - gi\|161614743\|ref\|YP_001588708.1\| hypothetical protein SPAB_02495 [Salmonella enterica subsp. enteric... gi\|205328525, gi... - gi\|205328525\|gb\|EDZ15289.1\| paraquat-inducible protein A [Salmonella enterica subsp. enterica serova... gi\|168264747, gi... - gi\|205346844\|gb\|EDZ33475.1\| paraquat-inducible protein A [Salmonella enterica subsp. enterica serova... gi\|16502238, gi\|... - gi\|25321517\|pir\|\|AB0626 probable inner membrane protein STY1084 [imported] - Salmonella enterica sub... gi\|214001677 - gi\|214001677\|ref\|ZP_03412412.1\| putative inner membrane protein [Salmonella enterica subsp. enterica... gi\|16764422, gi\|... - gi\|16764422\|ref\|NP_460037.1\| paraquat-inducible protein A [Salmonella typhimurium LT2], gi\|16419578\|... gi\|213418449 - gi\|213418449\|ref\|ZP_03351515.1\| putative inner membrane protein [Salmonella enterica subsp. enterica... gi\|213425908 - gi\|213425908\|ref\|ZP_03358658.1\| putative inner membrane protein [Salmonella enterica subsp. enterica... gi\|29137914, gi\|... - gi\|29142284\|ref\|NP_805626.1\| putative inner membrane protein [Salmonella enterica subsp. enterica se... gi\|213611229 - gi\|213611229\|ref\|ZP_03370055.1\| putative inner membrane protein [Salmonella enterica subsp. enterica... gi\|16759944 - gi\|16759944\|ref\|NP_455561.1\| putative inner membrane protein [Salmonella enterica subsp. enterica se... gi\|213646601 - gi\|213646601\|ref\|ZP_03376654.1\| putative inner membrane protein [Salmonella enterica subsp. enterica...	0.0	[12..423]	[6..417]
gi\|56128197, gi\|... - gi\|56413940\|ref\|YP_151015.1\| putative inner membrane protein [Salmonella enterica subsp. enterica se... gi\|197094340, gi... - gi\|197362863\|ref\|YP_002142500.1\| putative inner membrane protein [Salmonella enterica subsp. enteric...	0.0	[12..423]	[6..417]

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Predicted Domain #1

Region A:
Residues: [1-52]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCAVIEPVNG GQSGSILLCQ QCDMSVALPP LPYGTKAVCP RCKTTLTARW EE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.09
Match:	2d9kA
Description:	No description for 2d9kA was found.

Predicted Domain #2

Region A:
Residues: [53-209]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PRKRPIGYAL SALFMLLLAN LFPFVDMRVA GITSEISLIQ IPQVMLSDNY VSIATLFMVL  60
   61 VQLIPAFCMV AIILLCLRVR MPIRWKTAMA KALFQFKTWC MVEIFLAGVL VSFVKLMAYG 120
  121 EIGIGSSFIP YCLFCLLQVR AFQCIDRHWM WQDIAPA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	29.853872
Match:	PF04403.4
Description:	No description for PF04403.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [210-428]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PAVPYRLIPG RTGLRQGLRS CSCCTAILPQ DQVECPRCYT HGYVRRRNSL QWTMALLVTS  60
   61 ILLYIPANMM PIMITESLGN QMNSTIMAGV IFLWSEGSYP VALVIFIASI MVPSLKMLAI 120
  121 AWLCWDAKGK GNTDTERMHF IYEIVEFVGR WSMVDVFVIA VLSSLVRIGQ LMSIYPAIGA 180
  181 LLFAMVVILT MFSALTFDPR LTWDRINETT QKEPQGDGQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	93.657577
Match:	PF04403.4
Description:	No description for PF04403.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits