YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213586429
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E98-0664
Length:	128 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213586429.

Description	E-value	Query Range	Subject Range
TUSD_SHIF8 - Sulfurtransferase TusD OS=Shigella flexneri serotype 5b (strain 8401) GN=tusD PE=3 SV=1 gi\|24114609, gi\|... - gi\|24114609\|ref\|NP_709119.1\| hypothetical protein SF3363 [Shigella flexneri 2a str. 301], gi\|2405380... TUSD_SHIFL - Sulfurtransferase TusD OS=Shigella flexneri GN=tusD PE=3 SV=1 gi\|30043631, gi\|... - gi\|30065369\|ref\|NP_839540.1\| hypothetical protein S4399 [Shigella flexneri 2a str. 2457T], gi\|300436...	3.0E-43	[1..128]	[1..128]
gi\|253979330, gi... - gi\|254290023\|ref\|YP_003055771.1\| hypothetical protein ECD_03196 [Escherichia coli BL21(DE3)], gi\|253... TUSD_ECO8A - Sulfurtransferase TusD OS=Escherichia coli O8 (strain IAI1) GN=tusD PE=3 SV=1 gi\|242378871, gi... - gi\|251786598\|ref\|YP_003000902.1\| hypothetical protein B21_03147 [Escherichia coli BL21], gi\|24237887... TUSD_ECOSE - Sulfurtransferase TusD OS=Escherichia coli (strain SE11) GN=tusD PE=3 SV=1 gi\|253975174, gi... - gi\|254163273\|ref\|YP_003046381.1\| hypothetical protein ECB_03196 [Escherichia coli B str. REL606], gi... TUSD_ECOHS - Sulfurtransferase TusD OS=Escherichia coli O9:H4 (strain HS) GN=tusD PE=3 SV=1 TUSD_ECO24 - Sulfurtransferase TusD OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=tusD PE=3 SV=1	6.0E-43	[1..128]	[1..128]
TUSD_SHISS - Sulfurtransferase TusD OS=Shigella sonnei (strain Ss046) GN=tusD PE=3 SV=1 gi\|188495980, gi... - gi\|75510631\|ref\|ZP_00733529.1\| COG1553: Uncharacterized conserved protein involved in intracellular ...	8.0E-43	[1..128]	[1..128]
gi\|90109182, gi\|... - gi\|90109182\|pdb\|2D1P\|G Chain G, Crystal Structure Of Heterohexameric Tusbcd Proteins, Which Are Cruc...	1.0E-42	[1..128]	[13..140]
TUSD_SHIDS - Sulfurtransferase TusD OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=tusD PE=3 SV=1	2.0E-42	[1..128]	[1..128]
gi\|195632239, gi... - gi\|195632239\|gb\|EDX50723.1\| sulfurtransferase TusD [Salmonella enterica subsp. enterica serovar Newp... TUSD_SALHS - Sulfurtransferase TusD OS=Salmonella heidelberg (strain SL476) GN=tusD PE=3 SV=1 TUSD_SALSV - Sulfurtransferase TusD OS=Salmonella schwarzengrund (strain CVM19633) GN=tusD PE=3 SV=1 TUSD_SALA4 - Sulfurtransferase TusD OS=Salmonella agona (strain SL483) GN=tusD PE=3 SV=1 gi\|205327611, gi... - gi\|205327611\|gb\|EDZ14375.1\| sulfurtransferase TusD [Salmonella enterica subsp. enterica serovar 4,[5... gi\|168235037, gi... - gi\|197291514\|gb\|EDY30866.1\| sulfurtransferase TusD [Salmonella enterica subsp. enterica serovar Schw... gi\|205338762, gi... - gi\|205338762\|gb\|EDZ25526.1\| sulfurtransferase TusD [Salmonella enterica subsp. enterica serovar Heid... TUSD_SALPA - Sulfurtransferase TusD OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=tusD PE=3 SV=1 TUSD_SALPB - Sulfurtransferase TusD OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=tusD PE=3 SV=1 TUSD_SALCH - Sulfurtransferase TusD OS=Salmonella choleraesuis GN=tusD PE=3 SV=1 TUSD_SALTY - Sulfurtransferase TusD OS=Salmonella typhimurium GN=tusD PE=3 SV=1 TUSD_SALTY, YHEN... - (Q8ZLL7) UPF0163 protein yheN, Sulfurtransferase tusD OS=Salmonella typhimurium GN=tusD PE=3 SV=1 lcl\|NC_016856.1_... - [gene=yheN] [protein=hypothetical protein] [protein_id=YP_005239642.1] [location=complement(3617344.... TUSD_SALTY - Sulfurtransferase TusD OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=tusD PE=3 ... TUSD_SALCH - Sulfurtransferase TusD OS=Salmonella choleraesuis (strain SC-B67) GN=tusD PE=3 SV=1 TUSD_SALPB - Sulfurtransferase tusD OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=tusD PE=3 SV=1 TUSD_SALCH - Sulfurtransferase tusD OS=Salmonella choleraesuis GN=tusD PE=3 SV=1 gi\|238913574 - gi\|238913574\|ref\|ZP_04657411.1\| hypothetical protein SentesTe_20928 [Salmonella enterica subsp. ente... TUSD_SALPA - Sulfurtransferase TusD OS=Salmonella paratyphi A GN=tusD PE=3 SV=1 TUSD_SALPK - Sulfurtransferase TusD OS=Salmonella paratyphi A (strain AKU_12601) GN=tusD PE=3 SV=1 gi\|199604477, gi... - gi\|200387379\|ref\|ZP_03213991.1\| sulfurtransferase TusD [Salmonella enterica subsp. enterica serovar ... TUSD_SALPC - Sulfurtransferase TusD OS=Salmonella paratyphi C (strain RKS4594) GN=tusD PE=3 SV=1	2.0E-42	[1..128]	[1..128]
TUSD_SHIBS - Sulfurtransferase TusD OS=Shigella boydii serotype 4 (strain Sb227) GN=tusD PE=3 SV=1 TUSD_SHIB3 - Sulfurtransferase TusD OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=tusD PE=3 SV=1	2.0E-42	[1..128]	[1..128]
TUSD_VIBVU - Sulfurtransferase TusD homolog OS=Vibrio vulnificus (strain CMCP6) GN=tusD PE=3 SV=1 YD33_VIBVU, TUSD... - (Q8DCR3) Hypothetical UPF0163 protein VV11333, (Q8DCR3) UPF0163 protein VV11333, Sulfurtransferase T...	2.0E-42	[1..128]	[4..131]
gi\|254038507, gi... - gi\|254038507\|ref\|ZP_04872563.1\| sulfurtransferase tusD [Escherichia sp. 1_1_43], gi\|226839013\|gb\|EEH... YHEN_ECOLI, TUSD... - (P45532) UPF0163 protein yheN, Sulfurtransferase tusD (EC 2.8.1.-) (tRNA 2-thiouridine synthesizing ... gi\|124528120, gi... - gi\|124528120\|ref\|ZP_01699453.1\| DsrE family protein [Escherichia coli B], gi\|124500775\|gb\|EAY48244.1... EG12898 - sulfurtransferase for 2-thiolation step of mnm(5)-s(2)U34-tRNA synthesis / mnm(5)-s(2)U34-tRNA 2-thi... gi\|89110665, gi\|... - gi\|89110665\|ref\|AP_004445.1\| predicted intracellular sulfur oxidation protein [Escherichia coli str.... EG12898 - sulfurtransferase for 2-thiolation step of mnm(5)-s(2)U34-tRNA synthesis / mnm(5)-s(2)U34-tRNA 2-thi... TUSD_ECOLC - Sulfurtransferase TusD OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=tusD PE=3 SV=1 TUSD_ECODH - Sulfurtransferase TusD OS=Escherichia coli (strain K12 / DH10B) GN=tusD PE=3 SV=1 TUSD_ECOBW - Sulfurtransferase TusD OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=tusD PE=3 SV=1	3.0E-42	[1..128]	[1..128]
YHEN_ECOL6, TUSD... - (Q8FCY1) UPF0163 protein yheN, Sulfurtransferase TusD OS=Escherichia coli O6 GN=tusD PE=3 SV=1 gi\|227839358, gi... - gi\|227883479\|ref\|ZP_04001284.1\| Dsr family protein DsrE [Escherichia coli 83972], gi\|227839358\|gb\|EE... gi\|237703076, gi... - gi\|237703076\|ref\|ZP_04533557.1\| sulfurtransferase tusD [Escherichia sp. 3_2_53FAA], gi\|226902340\|gb\|... TUSD_ECOL6 - Sulfurtransferase TusD OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=tusD PE=3 S... gi\|75241560, gi\|... - gi\|75241560\|ref\|ZP_00725405.1\| COG1553: Uncharacterized conserved protein involved in intracellular ... TUSD_ECO45 - Sulfurtransferase TusD OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=tusD PE=3 SV=1 TUSD_ECOL5 - Sulfurtransferase TusD OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=tusD PE=3 SV=1 TUSD_ECOK1 - Sulfurtransferase TusD OS=Escherichia coli O1:K1 / APEC GN=tusD PE=3 SV=1 TUSD_ECOUT - Sulfurtransferase TusD OS=Escherichia coli (strain UTI89 / UPEC) GN=tusD PE=3 SV=1	3.0E-42	[1..128]	[1..128]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRYAIMVTGP AYGTQQASSA LQFAHALLNE GHELASVFFY REGVYNANLL TSPASDEYDL  60
   61 VRVWQKLNTQ HGVALNICVA AALRRGIIDE TEAGRLELPS ANLQPGFTLS GLGALAEASL 120
  121 TCDRVVQF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.221849
Match:	2d1pA
Description:	crystal structure of heterohexameric TusBCD proteins, which are crucial for the tRNA modification
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits