YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213648563
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. J185
Length:	273 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213648563.

Description	E-value	Query Range	Subject Range
gi\|75255743, gi\|... - gi\|75255743\|ref\|ZP_00727504.1\| COG2369: Uncharacterized protein, homolog of phage Mu protein gp30 [E...	388.0	[0..1]	[273..1]
gi\|48696940, gi\|... - gi\|48696940\|ref\|YP_024703.1\| gp30 [Burkholderia phage BcepMu], gi\|44829503\|gb\|AAS47870.1\| gp30 [Burk... gi\|197295369, gi... - gi\|197295369\|ref\|YP_002153910.1\| phage Mu F virion morphogenesis protein [Burkholderia cenocepacia J...	388.0	[0..1]	[272..1]
gi\|75228564, gi\|... - gi\|75228564\|ref\|ZP_00715198.1\| COG2369: Uncharacterized protein, homolog of phage Mu protein gp30 [E...	387.0	[0..1]	[273..1]
gi\|85058815, gi\|... - gi\|85058815\|ref\|YP_454517.1\| hypothetical protein SG0837 [Sodalis glossinidius str. 'morsitans'], gi...	384.0	[0..1]	[273..1]
gi\|188488965, gi... - gi\|75512141\|ref\|ZP_00734713.1\| COG2369: Uncharacterized protein, homolog of phage Mu protein gp30 [E...	383.0	[0..1]	[273..1]
gi\|37527314, gi\|... - gi\|37527314\|ref\|NP_930658.1\| hypothetical protein plu3440 [Photorhabdus luminescens subsp. laumondii...	372.0	[0..8]	[272..1]
gi\|50122642, gi\|... - gi\|50122642\|ref\|YP_051809.1\| putative phage-related protein [Pectobacterium atrosepticum SCRI1043], ...	371.0	[0..1]	[271..1]
gi\|34103449, gi\|... - gi\|34497593\|ref\|NP_901808.1\| hypothetical protein CV_2138 [Chromobacterium violaceum ATCC 12472], gi...	361.0	[0..6]	[272..4]
gi\|57904721 - gi\|57904721\|gb\|AAW58966.1\| gp30 [Cloning vector MuNXKan] GPF_BPMU - Putative capsid assembly protein F OS=Enterobacteria phage Mu GN=F PE=2 SV=2	342.0	[0..1]	[272..1]

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Predicted Domain #1

Region A:
Residues: [1-207]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVTTAELAY CMTLPPKRAV SYLKSKGYQI TWDWEEMWQE AHARAFTVAK VTRLDILEDI  60
   61 RGALQQAVDE GKTDRWFRQE LEPVLKRKGW WGPRDTTDPV TGKPVTIQQG SPWRLDTIFR 120
  121 TNMSVLYSAG RWAEQMENVD DRPYWMYTGI NDSHTRRSHL ALHGLVLRWD DPFWQAFYPP 180
  181 NGWRCRCSVI ALSATDVRAR GLKVISS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	37.522879
Match:	PF04233.5
Description:	No description for PF04233.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [208-273]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSAMGQELKL VSEKTGEMRN VATFNTGTTK VTTDVGWSYA PGAAYRPDLA RYQGTLQPLA  60
   61 QQELRG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits