YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|190408696
Organism:	Saccharomyces cerevisiae RM11-1a
Length:	316 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|190408696.

Description	E-value	Query Range	Subject Range
APD1_YEAST - Actin patches distal protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=APD1 PE=1... APD1 - Protein of unknown function, required for normal localization of actin patches and for normal tolera... gi\|190408696 - gi\|190408696\|gb\|EDV11961.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]	0.0	[1..316]	[1..316]
gi\|119935851, gi... - gi\|9758210\|dbj\|BAB08655.1\| sucrose cleavage protein-like [Arabidopsis thaliana], gi\|15241075\|ref\|NP_...	4.0E-72	[26..299]	[30..267]
gi\|17230100, gi\|... - gi\|17230100\|ref\|NP_486648.1\| hypothetical protein all2608 [Nostoc sp. PCC 7120], gi\|17131701\|dbj\|BAB... gi\|25381569 - pir\|\|AI2131 hypothetical protein all2608 [imported] - Nostoc sp. (strain PCC 7120)	8.0E-62	[53..316]	[10..257]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	7.0E-61	[66..300]	[2..211]

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Predicted Domain #1

Region A:
Residues: [1-241]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFLNIFKQK RGDEASQLSA KGREEISQSI KICKSDDAAN EHSCSGDCKT EIEEGEQAFA  60
   61 KLKIEHETPL LNSSKTPKIH FVVPTSQIDW QHDACLEDPK SVQYKISQWC DKNSAKFSNV 120
  121 GTGKTLNCAV SSLPKDIMDI DVMRGTKNNV LILPYFIWLN DLRSDDVEAT LDGLVPDLLD 180
  181 ENISREKLLE TRPNVAVARE RAFVFICSHT TRDKRCGITA PYLKKVFDSK LQEHGLYRDN 240
  241 S

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [242-316]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DYRAEGVKIA FVNHVGGHKF AANVQIYLRN PNTLIWLGRV TPTIVPSIVE HLIVPEEPTL  60
   61 PFPEKVRCIK KYQSW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.0
Match:	1f37A_
Description:	Thioredoxin-like 2Fe-2S ferredoxin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits