YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213650462
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. J185
Length:	428 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213650462.

Description	E-value	Query Range	Subject Range
gi\|62178642, gi\|... - gi\|62178642\|ref\|YP_215059.1\| putative oxidoreductase FixC [Salmonella enterica subsp. enterica serov...	2.0E-65	[1..428]	[1..428]
gi\|56412349, gi\|... - gi\|56412349\|ref\|YP_149424.1\| putative oxidoreductase FixC [Salmonella enterica subsp. enterica serov... gi\|197361286, gi... - gi\|197361286\|ref\|YP_002140921.1\| putative oxidoreductase FixC [Salmonella enterica subsp. enterica s...	5.0E-65	[1..428]	[1..428]
FIXC_SALTY - Protein FixC OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=fixC PE=3 SV=1 FIXC_SALTY - Protein fixC OS=Salmonella typhimurium GN=fixC PE=3 SV=1 FIXC_SALTY - Protein fixC OS=Salmonella typhimurium GN=fixC PE=3 SV=1	5.0E-65	[1..428]	[1..428]
gi\|75236845, gi\|... - gi\|75236845\|ref\|ZP_00720916.1\| COG0644: Dehydrogenases (flavoproteins) [Escherichia coli E110019], g...	3.0E-64	[1..428]	[1..429]
gi\|134051145, gi... - gi\|88945736\|ref\|ZP_01148902.1\| flavoprotein [Desulfotomaculum reducens MI-1], gi\|88924707\|gb\|EAR4370...	4.0E-62	[1..426]	[1..427]
gi\|209746978, gi... - pir\|\|F90634 flavoprotein [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952), gi\|... FIXC_ECO57 - Protein FixC OS=Escherichia coli O157:H7 GN=fixC PE=3 SV=1 gi\|254590580, gi... - gi\|254791180\|ref\|YP_003076017.1\| predicted oxidoreductase with FAD/NAD(P)-binding domain [Escherichi... gi\|208733211, gi... - gi\|208811934\|ref\|ZP_03253263.1\| protein FixC [Escherichia coli O157:H7 str. EC4045], gi\|208733211\|gb... gi\|208739787, gi... - gi\|208819664\|ref\|ZP_03259984.1\| protein FixC [Escherichia coli O157:H7 str. EC4042], gi\|208739787\|gb... gi\|209161176, gi... - gi\|209399776\|ref\|YP_002268651.1\| protein FixC [Escherichia coli O157:H7 str. EC4115], gi\|209161176\|g... gi\|217322428, gi... - gi\|217326207\|ref\|ZP_03442291.1\| protein FixC [Escherichia coli O157:H7 str. TW14588], gi\|217322428\|g... gi\|168785098, gi... - gi\|189374712\|gb\|EDU93128.1\| protein FixC [Escherichia coli O157:H7 str. EC869], gi\|168785098\|ref\|ZP_... gi\|168801928, gi... - gi\|189376021\|gb\|EDU94437.1\| protein FixC [Escherichia coli O157:H7 str. EC508], gi\|168801928\|ref\|ZP_... gi\|195937717 - gi\|195937717\|ref\|ZP_03083099.1\| putative oxidoreductase FixC [Escherichia coli O157:H7 str. EC4024] gi\|208727158, gi... - gi\|208807357\|ref\|ZP_03249694.1\| protein FixC [Escherichia coli O157:H7 str. EC4206], gi\|208727158\|gb... gi\|13359502, gi\|... - gi\|15829300\|ref\|NP_308073.1\| putative oxidoreductase FixC [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|189366925, gi... - gi\|189366925\|gb\|EDU85341.1\| protein FixC [Escherichia coli O157:H7 str. EC4501], gi\|168762807\|ref\|ZP... gi\|189364063, gi... - gi\|189364063\|gb\|EDU82482.1\| protein FixC [Escherichia coli O157:H7 str. EC4486], gi\|168766735\|ref\|ZP... gi\|168776963, gi... - gi\|187767729\|gb\|EDU31573.1\| protein FixC [Escherichia coli O157:H7 str. EC4196], gi\|168776963\|ref\|ZP... gi\|168781744, gi... - gi\|189000675\|gb\|EDU69661.1\| protein FixC [Escherichia coli O157:H7 str. EC4076], gi\|168781744\|ref\|ZP... gi\|188014309, gi... - gi\|188014309\|gb\|EDU52431.1\| protein FixC [Escherichia coli O157:H7 str. EC4113], gi\|168751699\|ref\|ZP... gi\|189356112, gi... - gi\|189356112\|gb\|EDU74531.1\| protein FixC [Escherichia coli O157:H7 str. EC4401], gi\|168756871\|ref\|ZP...	6.0E-62	[1..428]	[1..428]
gi\|209746980, gi... - gi\|209746980\|gb\|ACI71797.1\| flavoprotein [Escherichia coli], gi\|209746974\|gb\|ACI71794.1\| flavoprotei... gi\|74310663, gi\|... - gi\|74310663\|ref\|YP_309082.1\| putative oxidoreductase FixC [Shigella sonnei Ss046], gi\|73854140\|gb\|AA... gi\|75515631, gi\|... - gi\|75515631\|ref\|ZP_00737788.1\| COG0644: Dehydrogenases (flavoproteins) [Escherichia coli 53638], gi\|...	1.0E-61	[1..428]	[1..428]
gi\|98660169 - gi\|98660169\|dbj\|GAA02534.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	1.0E-61	[1..428]	[3..431]
gi\|117622334, gi... - gi\|117622334\|ref\|YP_851247.1\| putative oxidoreductase FixC [Escherichia coli APEC O1], gi\|115511458\|...	1.0E-61	[1..428]	[1..428]
gi\|215263277, gi... - gi\|215485205\|ref\|YP_002327636.1\| putative oxidoreductase FixC [Escherichia coli O127:H6 str. E2348/6... gi\|218359396, gi... - gi\|218552628\|ref\|YP_002385541.1\| putative oxidoreductase FixC [Escherichia coli IAI1], gi\|218359396\|... gi\|218363752, gi... - gi\|218556983\|ref\|YP_002389896.1\| putative oxidoreductase FixC [Escherichia coli S88], gi\|218363752\|e... gi\|218425483, gi... - gi\|218687919\|ref\|YP_002396131.1\| putative oxidoreductase FixC [Escherichia coli ED1a], gi\|218425483\|... gi\|91209104, gi\|... - gi\|91209104\|ref\|YP_539090.1\| putative oxidoreductase FixC [Escherichia coli UTI89], gi\|91070678\|gb\|A... gi\|110341848, gi... - gi\|110640256\|ref\|YP_667984.1\| putative oxidoreductase FixC [Escherichia coli 536], gi\|110341848\|gb\|A... gi\|83584912, gi\|... - gi\|83584912\|ref\|ZP_00923569.1\| COG0644: Dehydrogenases (flavoproteins) [Escherichia coli 101-1], gi\|... gi\|226840566, gi... - gi\|254037460\|ref\|ZP_04871537.1\| FixC [Escherichia sp. 1_1_43], gi\|226840566\|gb\|EEH72568.1\| FixC [Esc... gi\|254286971, gi... - gi\|254286971\|ref\|YP_003052719.1\| predicted oxidoreductase with FAD/NAD(P)-binding domain [Escherichi... gi\|170021599, gi... - gi\|170021599\|ref\|YP_001726553.1\| putative oxidoreductase FixC [Escherichia coli ATCC 8739], gi\|16975... gi\|242375882, gi... - gi\|251783609\|ref\|YP_002997913.1\| hypothetical protein B21_00046 [Escherichia coli BL21], gi\|24237588... gi\|170079706, gi... - gi\|170079706\|ref\|YP_001729026.1\| oxidoreductase [Escherichia coli str. K-12 substr. DH10B], gi\|16988... gi\|238899448, gi... - gi\|238899448\|ref\|YP_002925244.1\| putative oxidoreductase with FAD/NAD(P)-binding domain [Escherichia... gi\|209917235, gi... - gi\|209917235\|ref\|YP_002291319.1\| putative oxidoreductase FixC [Escherichia coli SE11], gi\|209910494\|... gi\|237704187, gi... - gi\|237704187\|ref\|ZP_04534668.1\| fixC [Escherichia sp. 3_2_53FAA], gi\|226902099\|gb\|EEH88358.1\| fixC [... gi\|227837887, gi... - gi\|227885058\|ref\|ZP_04002863.1\| oxidoreductase FixC [Escherichia coli 83972], gi\|227837887\|gb\|EEJ483... EG11564 - putative oxidoreductase / Predicted flavoprotein oxidoreductase; may be involved in anaerobic carnit... gi\|124531323, gi... - gi\|124531323\|ref\|ZP_01701651.1\| FAD dependent oxidoreductase [Escherichia coli B], gi\|124498623\|gb\|E... FIXC_ECOLI - Protein fixC - Escherichia coli EG11564 - putative oxidoreductase / Predicted flavoprotein oxidoreductase; may be involved in anaerobic carnit... FIXC_ECOL6 - Protein fixC OS=Escherichia coli O6 GN=fixC PE=3 SV=1 FIXC_ECOL6 - Protein FixC OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=fixC PE=3 SV=1 gi\|75194264, gi\|... - gi\|75194264\|ref\|ZP_00704334.1\| COG0644: Dehydrogenases (flavoproteins) [Escherichia coli HS], gi\|157... gi\|194429868, gi... - gi\|75208899\|ref\|ZP_00709176.1\| COG0644: Dehydrogenases (flavoproteins) [Escherichia coli B171], gi\|1... gi\|191169147, gi... - gi\|75227570\|ref\|ZP_00714325.1\| COG0644: Dehydrogenases (flavoproteins) [Escherichia coli B7A], gi\|19... gi\|190905595, gi... - gi\|75237164\|ref\|ZP_00721212.1\| COG0644: Dehydrogenases (flavoproteins) [Escherichia coli F11], gi\|19... gi\|75255698, gi\|... - gi\|75255698\|ref\|ZP_00727464.1\| COG0644: Dehydrogenases (flavoproteins) [Escherichia coli E22], gi\|19... gi\|89106927, gi\|... - gi\|89106927\|ref\|AP_000707.1\| predicted oxidoreductase, FAD/NAD(P)-binding domain [Escherichia coli s...	1.0E-61	[1..428]	[1..428]

Back

Predicted Domain #1

Region A:
Residues: [1-428]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEDIFDAII VGAGLAGSVA ALVLAREGAQ VLVIERGNSA GAKNVTGGRL YAHSLERIIP  60
   61 GFADQAPIER MITHEKLAFM TDNGAMTIDY CNGEDASASQ VSYSVLRSKF DAWLMEQAEE 120
  121 AGAQLITGIR VDNVVQRDGK VVGVEADGDI LEAKVVILAD GVNSLLAEKL GMAKRVEASH 180
  181 VAVGVKELIE LPKSVIEDRF QLQGNEGAAC LFAGAPTDGL MGGGFLYTNE TTLSLGLVCG 240
  241 LHHLKDAKKS VPQMLEDFKQ HPAVAPLIAG GKLVEYAAHV VPEAGMNMQP ELVGDGVLIA 300
  301 GDAAGMCMNL GFTIRGMDLA ISAGEAAAKT VLSAMKRDDF SKQSLGEYRQ HLDEGPMRDM 360
  361 RMYQKLPAFL DNPRMFTAYP EMAVSIARDL FTVDGSAPVP MRKKILRHAK KVGFINLMKD 420
  421 GLKGVTVL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.154902
Match:	2gmhA
Description:	No description for 2gmhA was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.501220963069211	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: