YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213622040
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E98-2068
Length:	199 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213622040.

Description	E-value	Query Range	Subject Range
gi\|13361901 - gi\|13361901\|dbj\|BAB35857.1\| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi\|117623901, gi... - gi\|117623901\|ref\|YP_852814.1\| hypothetical protein APECO1_798 [Escherichia coli APEC O1], gi\|1155130... gi\|13361901 - gi\|13361901\|dbj\|BAB35857.1\| hypothetical protein [Escherichia coli O157:H7] gi\|81241222, gi\|... - gi\|82777074\|ref\|YP_403423.1\| hypothetical protein SDY_1821 [Shigella dysenteriae Sd197], gi\|81241222... gi\|91210943, gi\|... - gi\|91210943\|ref\|YP_540929.1\| hypothetical protein UTI89_C1922 [Escherichia coli UTI89], gi\|91072517\|... gi\|209768758, gi... - pir\|\|B90933 hypothetical protein ECs2434 [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|237705677, gi... - gi\|237705677\|ref\|ZP_04536158.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|15802139, gi\|... - gi\|15802139\|ref\|NP_288161.1\| hypothetical protein Z2757 [Escherichia coli O157:H7 EDL933], gi\|125157...	6.0E-55	[1..199]	[1..199]
gi\|238900942, gi... - gi\|238900942\|ref\|YP_002926738.1\| putative inner membrane protein regulated by LexA [Escherichia coli... gi\|73855429, gi\|... - gi\|74311952\|ref\|YP_310371.1\| hypothetical protein SSON_1429 [Shigella sonnei Ss046], gi\|73855429\|gb\|... gi\|49176139, gi\|... - gi\|49176139\|ref\|NP_416242.3\| LexA regulated gene, possible SOS response [Escherichia coli K12], gb\|A... gi\|145698275\|ref... - predicted inner membrane protein regulated by LexA [Escherichia coli str. K-12 substr. MG1655] gi\|194418290, gi... - gi\|194433527\|ref\|ZP_03065805.1\| putative metal-dependent hydrolase, membrane-bound [Shigella dysente... YDJM_SHIFL - Inner membrane protein ydjM OS=Shigella flexneri GN=ydjM PE=3 SV=1 gi\|194428573, gi... - gi\|194428573\|ref\|ZP_03061112.1\| putative metal-dependent hydrolase, membrane-bound [Escherichia coli... YDJM_ECOLI - Inner membrane protein ydjM precursor - Escherichia coli	1.0E-54	[1..199]	[1..199]
gi\|26108384, gi\|... - gi\|26247981\|ref\|NP_754021.1\| Hypothetical protein ydjM precursor [Escherichia coli CFT073], gi\|26108...	1.0E-54	[1..199]	[1..199]
gi\|16764672, gi\|... - gi\|16764672\|ref\|NP_460287.1\| putative SOS response protein [Salmonella typhimurium LT2], gi\|16419839... gi\|204322879, gi... - gi\|204927537\|ref\|ZP_03218738.1\| inner membrane protein YdjM [Salmonella enterica subsp. enterica ser... gi\|207857170, gi... - gi\|207857170\|ref\|YP_002243821.1\| hypothetical protein SEN1722 [Salmonella enterica subsp. enterica s... gi\|198244414, gi... - gi\|198244414\|ref\|YP_002215803.1\| inner membrane protein YdjM [Salmonella enterica subsp. enterica se... gi\|199603241, gi... - gi\|200390796\|ref\|ZP_03217407.1\| inner membrane protein YdjM [Salmonella enterica subsp. enterica ser... gi\|197211823, gi... - gi\|197248120\|ref\|YP_002146714.1\| inner membrane protein YdjM [Salmonella enterica subsp. enterica se... gi\|238910860 - gi\|238910860\|ref\|ZP_04654697.1\| hypothetical protein SentesTe_06962 [Salmonella enterica subsp. ente... gi\|197242145, gi... - gi\|197263890\|ref\|ZP_03163964.1\| inner membrane protein YdjM [Salmonella enterica subsp. enterica ser... gi\|194468739, gi... - gi\|194468739\|ref\|ZP_03074723.1\| inner membrane protein YdjM [Salmonella enterica subsp. enterica ser... gi\|62127545, gi\|... - gi\|62179912\|ref\|YP_216329.1\| LexA regulated gene, putative SOS response [Salmonella enterica subsp. ... gi\|194712921, gi... - gi\|194737419\|ref\|YP_002114341.1\| inner membrane protein YdjM [Salmonella enterica subsp. enterica se... gi\|205341630, gi... - gi\|205341630\|gb\|EDZ28394.1\| inner membrane protein YdjM [Salmonella enterica subsp. enterica serovar... gi\|194443166, gi... - gi\|194443166\|ref\|YP_002040581.1\| inner membrane protein YdjM [Salmonella enterica subsp. enterica se... gi\|168263858, gi... - gi\|205347640\|gb\|EDZ34271.1\| inner membrane protein YdjM [Salmonella enterica subsp. enterica serovar... gi\|168463279, gi... - gi\|195634455\|gb\|EDX52807.1\| inner membrane protein YdjM [Salmonella enterica subsp. enterica serovar... gi\|168233240, gi... - gi\|205332739\|gb\|EDZ19503.1\| inner membrane protein YdjM [Salmonella enterica subsp. enterica serovar... gi\|197288286, gi... - gi\|197288286\|gb\|EDY27671.1\| inner membrane protein YdjM [Salmonella enterica subsp. enterica serovar... gi\|167552321, gi... - gi\|205322986\|gb\|EDZ10825.1\| inner membrane protein YdjM [Salmonella enterica subsp. enterica serovar... gi\|167991857, gi... - gi\|205329741\|gb\|EDZ16505.1\| inner membrane protein YdjM [Salmonella enterica subsp. enterica serovar... gi\|161363638, gi... - gi\|161614274\|ref\|YP_001588239.1\| hypothetical protein SPAB_02019 [Salmonella enterica subsp. enteric...	2.0E-54	[1..199]	[1..199]
gi\|82543867, gi\|... - gi\|82543867\|ref\|YP_407814.1\| hypothetical protein SBO_1362 [Shigella boydii Sb227], gi\|81245278\|gb\|A...	4.0E-54	[1..199]	[1..199]
gi\|161367597 - gi\|161367597\|ref\|NP_288161.2\| hypothetical protein Z2757 [Escherichia coli O157:H7 EDL933] gi\|168749455, gi... - gi\|188016226\|gb\|EDU54348.1\| putative metal-dependent hydrolase, membrane-bound [Escherichia coli O15... gi\|253773318, gi... - gi\|254288575\|ref\|YP_003054323.1\| predicted inner membrane protein regulated by LexA [Escherichia col... gi\|38704009 - gi\|38704009\|ref\|NP_310461.2\| hypothetical protein ECs2434 [Escherichia coli O157:H7] gi\|38704009 - gi\|38704009\|ref\|NP_310461.2\| hypothetical protein ECs2434 [Escherichia coli O157:H7 str. Sakai] gi\|189356195, gi... - gi\|189356195\|gb\|EDU74614.1\| putative metal-dependent hydrolase, membrane-bound [Escherichia coli O15... gi\|242377450, gi... - gi\|251785177\|ref\|YP_002999481.1\| hypothetical protein B21_01685 [Escherichia coli BL21], gi\|24237745... gi\|161950108 - gi\|161950108\|ref\|YP_403423.2\| hypothetical protein SDY_1821 [Shigella dysenteriae Sd197] gi\|254793346, gi... - gi\|254793346\|ref\|YP_003078183.1\| predicted inner membrane protein regulated by LexA [Escherichia col... gi\|162138431 - gi\|162138431\|ref\|YP_540929.2\| hypothetical protein UTI89_C1922 [Escherichia coli UTI89] gi\|253973688, gi... - gi\|254161787\|ref\|YP_003044895.1\| predicted inner membrane protein regulated by LexA [Escherichia col... gi\|208731201, gi... - gi\|208816858\|ref\|ZP_03257978.1\| putative metal-dependent hydrolase, membrane-bound [Escherichia coli... gi\|208740706, gi... - gi\|208820583\|ref\|ZP_03260903.1\| putative metal-dependent hydrolase, membrane-bound [Escherichia coli... gi\|195937412 - gi\|195937412\|ref\|ZP_03082794.1\| hypothetical protein EscherichcoliO157_13342 [Escherichia coli O157:... gi\|208810271, gi... - gi\|208810271\|ref\|ZP_03252147.1\| putative metal-dependent hydrolase, membrane-bound [Escherichia coli... gi\|215486946, gi... - gi\|215486946\|ref\|YP_002329377.1\| hypothetical protein E2348C_1857 [Escherichia coli O127:H6 str. E23... gi\|217318369, gi... - gi\|217329022\|ref\|ZP_03445103.1\| putative metal-dependent hydrolase, membrane-bound [Escherichia coli... gi\|209400224, gi... - gi\|209400224\|ref\|YP_002270798.1\| putative metal-dependent hydrolase, membrane-bound [Escherichia col... gi\|209919088, gi... - gi\|209919088\|ref\|YP_002293172.1\| hypothetical protein ECSE_1897 [Escherichia coli SE11], gi\|20991234... gi\|187769447, gi... - gi\|187769447\|gb\|EDU33291.1\| putative metal-dependent hydrolase, membrane-bound [Escherichia coli O15... gi\|189000318, gi... - gi\|189000318\|gb\|EDU69304.1\| putative metal-dependent hydrolase, membrane-bound [Escherichia coli O15... gi\|168762207, gi... - gi\|189367464\|gb\|EDU85880.1\| putative metal-dependent hydrolase, membrane-bound [Escherichia coli O15... gi\|168770490, gi... - gi\|189360659\|gb\|EDU79078.1\| putative metal-dependent hydrolase, membrane-bound [Escherichia coli O15... gi\|170019925, gi... - gi\|170019925\|ref\|YP_001724879.1\| hypothetical protein EcolC_1904 [Escherichia coli ATCC 8739], gi\|16... gi\|170681980, gi... - gi\|170681980\|ref\|YP_001743521.1\| putative metal-dependent hydrolase, membrane-bound [Escherichia col... gi\|189372064, gi... - gi\|189372064\|gb\|EDU90480.1\| putative metal-dependent hydrolase, membrane-bound [Escherichia coli O15... gi\|168800090, gi... - gi\|189377528\|gb\|EDU95944.1\| putative metal-dependent hydrolase, membrane-bound [Escherichia coli O15... gi\|194438565, gi... - gi\|83586028\|ref\|ZP_00924666.1\| COG1988: Predicted membrane-bound metal-dependent hydrolases [Escheri... gi\|124499545, gi... - gi\|124529992\|ref\|ZP_01700804.1\| membrane-bound metal-dependent hydrolase [Escherichia coli B], gi\|12... gi\|218689670, gi... - gi\|218689670\|ref\|YP_002397882.1\| hypothetical protein ECED1_1931 [Escherichia coli ED1a], gi\|2184272... gi\|218352019, gi... - gi\|218695287\|ref\|YP_002402954.1\| hypothetical protein EC55989_1895 [Escherichia coli 55989], gi\|2183... gi\|218554294, gi... - gi\|218554294\|ref\|YP_002387207.1\| hypothetical protein ECIAI1_1786 [Escherichia coli IAI1], gi\|218361... gi\|218365366, gi... - gi\|218558597\|ref\|YP_002391510.1\| hypothetical protein ECS88_1780 [Escherichia coli S88], gi\|21836536... gi\|218699705, gi... - gi\|218699705\|ref\|YP_002407334.1\| hypothetical protein ECIAI39_1326 [Escherichia coli IAI39], gi\|2183... gi\|218432323, gi... - gi\|218705226\|ref\|YP_002412745.1\| hypothetical protein ECUMN_2017 [Escherichia coli UMN026], gi\|21843...	9.0E-54	[5..199]	[1..195]
gi\|75241396, gi\|... - gi\|75241396\|ref\|ZP_00725247.1\| COG1988: Predicted membrane-bound metal-dependent hydrolases [Escheri...	9.0E-54	[5..199]	[1..195]
gi\|157066868, gi... - gi\|75195798\|ref\|ZP_00705868.1\| COG1988: Predicted membrane-bound metal-dependent hydrolases [Escheri... gi\|75210213 - gi\|75210213\|ref\|ZP_00710381.1\| COG1988: Predicted membrane-bound metal-dependent hydrolases [Escheri... gi\|191169010, gi... - gi\|75227710\|ref\|ZP_00714445.1\| COG1988: Predicted membrane-bound metal-dependent hydrolases [Escheri... gi\|75236802, gi\|... - gi\|75236802\|ref\|ZP_00720873.1\| COG1988: Predicted membrane-bound metal-dependent hydrolases [Escheri... gi\|75256131, gi\|... - gi\|75256131\|ref\|ZP_00727827.1\| COG1988: Predicted membrane-bound metal-dependent hydrolases [Escheri... EG13989 - inner membrane protein regulated by LexA / Inner membrane protein, LexA regulated, function unknown gi\|188494682, gi... - gi\|75513775\|ref\|ZP_00736151.1\| COG1988: Predicted membrane-bound metal-dependent hydrolases [Escheri... gi\|89108567, gi\|... - gi\|89108567\|ref\|AP_002347.1\| predicted inner membrane protein regulated by LexA [Escherichia coli st... gi\|56479917, gi\|... - gi\|56479917\|ref\|NP_707386.2\| hypothetical protein SF1502 [Shigella flexneri 2a str. 301], gi\|5638346... gi\|110805461, gi... - gi\|110805461\|ref\|YP_688981.1\| hypothetical protein SFV_1493 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|83569670 - gi\|83569670\|ref\|ZP_00921121.1\| COG1988: Predicted membrane-bound metal-dependent hydrolases [Shigell... gi\|157157851, gi... - gi\|75190762\|ref\|ZP_00704029.1\| COG1988: Predicted membrane-bound metal-dependent hydrolases [Escheri... gi\|161986533 - gi\|161986533\|ref\|YP_310371.2\| hypothetical protein SSON_1429 [Shigella sonnei Ss046] sp\|P64481\|YDJM_ECOLI - Inner membrane protein ydjM OS=Escherichia coli (strain K12) GN=ydjM PE=1 SV=2 gi\|170081385, gi... - gi\|170081385\|ref\|YP_001730705.1\| inner membrane protein regulated by LexA [Escherichia coli str. K-1... EG13989 - inner membrane protein regulated by LexA / Inner membrane protein, LexA regulated, function unknown YDJM_SHIFL - Inner membrane protein YdjM OS=Shigella flexneri GN=ydjM PE=3 SV=2 gi\|30063005, gi\|... - gi\|30063005\|ref\|NP_837176.1\| hypothetical protein S1619 [Shigella flexneri 2a str. 2457T], gi\|300412...	1.0E-53	[5..199]	[1..195]
gi\|110641849, gi... - gi\|110641849\|ref\|YP_669579.1\| hypothetical protein ECP_1675 [Escherichia coli 536], gi\|110343441\|gb\|... gi\|161486215 - gi\|161486215\|ref\|NP_754021.2\| hypothetical protein c2127 [Escherichia coli CFT073]	2.0E-53	[5..199]	[1..195]
gi\|197094093, gi... - gi\|197362616\|ref\|YP_002142253.1\| hypothetical protein SSPA1414 [Salmonella enterica subsp. enterica ... gi\|162139593 - gi\|162139593\|ref\|YP_216329.2\| hypothetical protein SC1342 [Salmonella enterica subsp. enterica serov... gi\|161353604 - gi\|161353604\|ref\|NP_460287.2\| hypothetical protein STM1321 [Salmonella typhimurium LT2] gi\|56127950, gi\|... - gi\|56413693\|ref\|YP_150768.1\| hypothetical protein SPA1523 [Salmonella enterica subsp. enterica serov... lcl\|NC_016856.1_... - [gene=ydjM] [protein=hypothetical protein] [protein_id=YP_005237180.1] [location=complement(1411579....	4.0E-53	[5..199]	[1..195]

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Predicted Domain #1

Region A:
Residues: [1-199]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFIMTAEGH LLFSIASAVF AKNAELTPAL AHGDWWHIIP SAILTCLLPD IDHPKSFLGQ  60
   61 RLKWVSKPIA RAFGHRGFTH SLLAVFALLA TFYLKVPDTW IIPADALQGM VLGYLSHIVA 120
  121 DMLTPAGVPL LWPCRWRFRL PILAPRKGNQ LERFLCMALF AWAVWMPQSM PENNVIRWSS 180
  181 QMITILQMQF NRFINHQID

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	39.920819
Match:	PF04307.5
Description:	No description for PF04307.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.921	N/A	N/A	a.4.9	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits