YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|204928916, gi...
Organism:	Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433
Length:	183 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|204928916, gi....

Description	E-value	Query Range	Subject Range
gi\|169750319, gi... - gi\|170023785\|ref\|YP_001720290.1\| phosphodiesterase [Yersinia pseudotuberculosis YPIII], gi\|169750319... gi\|167051534, gi... - gi\|167399030\|ref\|ZP_02304554.1\| phosphodiesterase, MJ0936 family [Yersinia pestis biovar Antiqua str... gi\|108808057, gi... - gi\|108808057\|ref\|YP_651973.1\| phosphodiesterase [Yersinia pestis Antiqua], gi\|108779970\|gb\|ABG14028.... gi\|153948860, gi... - gi\|153948860\|ref\|YP_001400413.1\| phosphodiesterase [Yersinia pseudotuberculosis IP 31758], gi\|152960... gi\|186896003, gi... - gi\|186896003\|ref\|YP_001873115.1\| phosphodiesterase [Yersinia pseudotuberculosis PB1/+], gi\|186699029... gi\|162352525, gi... - gi\|162419710\|ref\|YP_001604955.1\| phosphodiesterase [Yersinia pestis Angola], gi\|162352525\|gb\|ABX8647... gi\|51590205, gi\|... - gi\|51596923\|ref\|YP_071114.1\| phosphodiesterase [Yersinia pseudotuberculosis IP 32953], gi\|51590205\|e... Q668Y3\|Q668Y3_YERPS - Putative uncharacterized protein - Yersinia pseudotuberculosis	5.0E-35	[1..183]	[1..183]
gi\|52695570, gi\|... - gi\|52695571\|pdb\|1SU1\|D Chain D, Structural And Biochemical Characterization Of Yfce, A Phosphoestera...	9.0E-35	[1..182]	[26..207]
gi\|238862821, gi... - gi\|238901475\|ref\|YP_002927271.1\| putative phosphatase [Escherichia coli BW2952], gi\|238862821\|gb\|ACR... gi\|254162309, gi... - gi\|254162309\|ref\|YP_003045417.1\| phosphodiesterase [Escherichia coli B str. REL606], gi\|253974210\|gb... gi\|242377933, gi... - gi\|251785660\|ref\|YP_002999964.1\| hypothetical protein B21_02185 [Escherichia coli BL21], gi\|24237793... gi\|254593593, gi... - gi\|254794193\|ref\|YP_003079030.1\| phosphodiesterase [Escherichia coli O157:H7 str. TW14359], gi\|25459... YFCE_ECOLI - Phosphodiesterase yfcE (EC 3.1.4.-) - Escherichia coli gi\|254289070, gi... - gi\|254289070\|ref\|YP_003054818.1\| phosphodiesterase [Escherichia coli BL21(DE3)], gi\|253978377\|gb\|ACT... YFCE_ECOL6 - Phosphodiesterase yfcE OS=Escherichia coli O6 GN=yfcE PE=3 SV=1 YFCE_ECO57 - Phosphodiesterase YfcE OS=Escherichia coli O157:H7 GN=yfcE PE=3 SV=1 gi\|218432927, gi... - gi\|218705830\|ref\|YP_002413349.1\| phosphodiesterase [Escherichia coli UMN026], gi\|218432927\|emb\|CAR13... EG14108 - phosphodiesterase activity on bis-pNPP / Phosphodiesterase, function unknown; has activity on model ... gi\|218370760, gi... - gi\|218700774\|ref\|YP_002408403.1\| phosphodiesterase [Escherichia coli IAI39], gi\|218370760\|emb\|CAR185... YFCE_ECOL6 - Phosphodiesterase YfcE OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yfcE PE=3 S... gi\|13362654 - gi\|13362654\|dbj\|BAB36607.1\| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi\|15802847, gi\|... - gi\|15802847\|ref\|NP_288874.1\| phosphodiesterase [Escherichia coli O157:H7 EDL933], gi\|12516656\|gb\|AAG... gi\|85675352, gi\|... - gi\|89109120\|ref\|AP_002900.1\| predicted phosphatase [Escherichia coli str. K-12 substr. W3110], gi\|85... gi\|218352631, gi... - gi\|218695899\|ref\|YP_002403566.1\| phosphodiesterase [Escherichia coli 55989], gi\|218352631\|emb\|CAU984... EG14108 - phosphodiesterase activity on bis-pNPP / Phosphodiesterase, function unknown; has activity on model ... gi\|218554856, gi... - gi\|218554856\|ref\|YP_002387769.1\| phosphodiesterase [Escherichia coli IAI1], gi\|218361624\|emb\|CAQ9921... gi\|73856294, gi\|... - gi\|74312817\|ref\|YP_311236.1\| phosphodiesterase [Shigella sonnei Ss046], gi\|73856294\|gb\|AAZ89001.1\| c... gi\|169889751, gi... - gi\|170081916\|ref\|YP_001731236.1\| phosphatase [Escherichia coli str. K-12 substr. DH10B], gi\|16988975... gi\|82544779, gi\|... - gi\|82544779\|ref\|YP_408726.1\| phosphodiesterase [Shigella boydii Sb227], gi\|81246190\|gb\|ABB66898.1\| c...	2.0E-34	[1..182]	[2..183]
gi\|188017233, gi... - gi\|188017233\|gb\|EDU55355.1\| phosphodiesterase, YfcE family [Escherichia coli O157:H7 str. EC4113], g... gi\|189357614, gi... - gi\|189357614\|gb\|EDU76033.1\| phosphodiesterase, YfcE family [Escherichia coli O157:H7 str. EC4401], g... gi\|38704073 - gi\|38704073\|ref\|NP_311211.2\| phosphodiesterase [Escherichia coli O157:H7] gi\|253772776, gi... - gi\|253772776\|ref\|YP_003035607.1\| phosphodiesterase, MJ0936 family [Escherichia coli BL21(DE3)], gi\|2... gi\|194418882, gi... - gi\|83570146\|ref\|ZP_00921593.1\| COG0622: Predicted phosphoesterase [Shigella dysenteriae 1012], gi\|19... gi\|227887359, gi... - gi\|227887359\|ref\|ZP_04005164.1\| phosphodiesterase [Escherichia coli 83972], gi\|227835709\|gb\|EEJ46175... gi\|208813732, gi... - gi\|208813732\|ref\|ZP_03255061.1\| phosphodiesterase, YfcE family [Escherichia coli O157:H7 str. EC4045... gi\|208741784, gi... - gi\|208821661\|ref\|ZP_03261981.1\| phosphodiesterase, YfcE family [Escherichia coli O157:H7 str. EC4042... gi\|195935679 - gi\|195935679\|ref\|ZP_03081061.1\| phosphodiesterase [Escherichia coli O157:H7 str. EC4024] gi\|208729346, gi... - gi\|208809545\|ref\|ZP_03251882.1\| phosphodiesterase, YfcE family [Escherichia coli O157:H7 str. EC4206... gi\|215265585, gi... - gi\|215487513\|ref\|YP_002329944.1\| phosphodiesterase [Escherichia coli O127:H6 str. E2348/69], gi\|2152... gi\|38704073 - gi\|38704073\|ref\|NP_311211.2\| phosphodiesterase [Escherichia coli O157:H7 str. Sakai] gi\|217327126, gi... - gi\|217327126\|ref\|ZP_03443209.1\| phosphodiesterase, YfcE family [Escherichia coli O157:H7 str. TW1458... gi\|110344096, gi... - gi\|110642504\|ref\|YP_670234.1\| phosphodiesterase [Escherichia coli 536], gi\|110344096\|gb\|ABG70333.1\| ... gi\|209400493, gi... - gi\|209400493\|ref\|YP_002271709.1\| phosphodiesterase, YfcE family [Escherichia coli O157:H7 str. EC411... gi\|209919749, gi... - gi\|209919749\|ref\|YP_002293833.1\| phosphodiesterase [Escherichia coli SE11], gi\|209913008\|dbj\|BAG7808... gi\|168772971, gi... - gi\|187771082\|gb\|EDU34926.1\| phosphodiesterase, YfcE family [Escherichia coli O157:H7 str. EC4196], g... gi\|168780158, gi... - gi\|189002083\|gb\|EDU71069.1\| phosphodiesterase, YfcE family [Escherichia coli O157:H7 str. EC4076], g... gi\|189368220, gi... - gi\|189368220\|gb\|EDU86636.1\| phosphodiesterase, YfcE family [Escherichia coli O157:H7 str. EC4501], g... gi\|189362981, gi... - gi\|189362981\|gb\|EDU81400.1\| phosphodiesterase, YfcE family [Escherichia coli O157:H7 str. EC4486], g... gi\|170019391, gi... - gi\|170019391\|ref\|YP_001724345.1\| phosphodiesterase [Escherichia coli ATCC 8739], gi\|169754319\|gb\|ACA... gi\|170680770, gi... - gi\|170680770\|ref\|YP_001744500.1\| phosphodiesterase [Escherichia coli SMS-3-5], gi\|170518488\|gb\|ACB16... gi\|189372951, gi... - gi\|189372951\|gb\|EDU91367.1\| phosphodiesterase, YfcE family [Escherichia coli O157:H7 str. EC869], gi... gi\|189379031, gi... - gi\|189379031\|gb\|EDU97447.1\| phosphodiesterase, YfcE family [Escherichia coli O157:H7 str. EC508], gi... gi\|75259758, gi\|... - gi\|75259758\|ref\|ZP_00731060.1\| COG0622: Predicted phosphoesterase [Escherichia coli E22], gi\|1930622... gi\|75515665, gi\|... - gi\|75515665\|ref\|ZP_00737800.1\| COG0622: Predicted phosphoesterase [Escherichia coli 53638], gi\|18849... gi\|33347644\|ref\|... - hypothetical protein b2300 [Escherichia coli K12], hypothetical protein b2300 [Escherichia coli K12]... gi\|83588283, gi\|... - gi\|83588283\|ref\|ZP_00926908.1\| COG0622: Predicted phosphoesterase [Escherichia coli 101-1], gi\|19443... gi\|187427633, gi... - gi\|75177912\|ref\|ZP_00697974.1\| COG0622: Predicted phosphoesterase [Shigella boydii BS512], gi\|187730... gi\|75187082, gi\|... - gi\|75187082\|ref\|ZP_00700349.1\| COG0622: Predicted phosphoesterase [Escherichia coli E24377A], gi\|157... gi\|157161788, gi... - gi\|75196343\|ref\|ZP_00706413.1\| COG0622: Predicted phosphoesterase [Escherichia coli HS], gi\|15716178... gi\|75209287, gi\|... - gi\|75209287\|ref\|ZP_00709527.1\| COG0622: Predicted phosphoesterase [Escherichia coli B171], gi\|194429... gi\|190903482, gi... - gi\|75230318\|ref\|ZP_00716808.1\| COG0622: Predicted phosphoesterase [Escherichia coli B7A], gi\|1911665... gi\|193068176, gi... - gi\|75238083\|ref\|ZP_00722088.1\| COG0622: Predicted phosphoesterase [Escherichia coli E110019], gi\|193... gi\|75243111, gi\|... - gi\|75243111\|ref\|ZP_00726817.1\| COG0622: Predicted phosphoesterase [Escherichia coli F11], gi\|1911701...	2.0E-34	[1..182]	[1..182]
gi\|82777708, gi\|... - gi\|82777708\|ref\|YP_404057.1\| phosphodiesterase [Shigella dysenteriae Sd197], gi\|81241856\|gb\|ABB62566...	2.0E-34	[1..182]	[2..183]
gi\|50121966, gi\|... - gi\|50121966\|ref\|YP_051133.1\| phosphodiesterase [Pectobacterium atrosepticum SCRI1043], gi\|49612492\|e...	5.0E-34	[1..182]	[1..182]
gi\|91073170, gi\|... - gi\|91211596\|ref\|YP_541582.1\| phosphodiesterase [Escherichia coli UTI89], gi\|91073170\|gb\|ABE08051.1\| ... gi\|117624490, gi... - gi\|117624490\|ref\|YP_853403.1\| phosphodiesterase [Escherichia coli APEC O1], gi\|115513614\|gb\|ABJ01689... gi\|218365982, gi... - gi\|218559213\|ref\|YP_002392126.1\| phosphodiesterase [Escherichia coli S88], gi\|218365982\|emb\|CAR03726... gi\|226901143, gi... - gi\|237704777\|ref\|ZP_04535258.1\| phosphodiesterase [Escherichia sp. 3_2_53FAA], gi\|226901143\|gb\|EEH87... gi\|218428024, gi... - gi\|218690460\|ref\|YP_002398672.1\| phosphodiesterase [Escherichia coli ED1a], gi\|218428024\|emb\|CAR0894...	6.0E-34	[1..182]	[2..183]
gi\|116184508, gi... - gi\|75854987\|ref\|ZP_00762653.1\| COG0622: Predicted phosphoesterase [Vibrio sp. Ex25], gi\|116184508\|re...	4.0E-33	[1..180]	[1..181]
gi\|77629652, gi\|... - gi\|77629652\|ref\|ZP_00792238.1\| COG0622: Predicted phosphoesterase [Yersinia pseudotuberculosis IP 31... gi\|77635326 - gi\|77635326\|ref\|ZP_00797412.1\| COG0622: Predicted phosphoesterase [Yersinia pestis Angola]	4.0E-33	[5..183]	[2..180]
gi\|167056644, gi... - gi\|167424762\|ref\|ZP_02316515.1\| putative phosphoesterase, subfamily [Yersinia pestis biovar Mediaeva... gi\|22125508, gi\|... - gi\|22125508\|ref\|NP_668931.1\| phosphodiesterase [Yersinia pestis KIM], gi\|21958405\|gb\|AAM85182.1\|AE01... gi\|166008547, gi... - gi\|166008547\|ref\|ZP_02229445.1\| putative phosphoesterase family protein [Yersinia pestis biovar Anti... gi\|45437037, gi\|... - gi\|45442173\|ref\|NP_993712.1\| phosphodiesterase [Yersinia pestis biovar Microtus str. 91001], gi\|4543... gi\|166214213, gi... - gi\|166214213\|ref\|ZP_02240248.1\| putative phosphoesterase, subfamily [Yersinia pestis biovar Antiqua ... gi\|108812329, gi... - gi\|229902681\|ref\|ZP_04517798.1\| Phosphodiesterase yfcE [Yersinia pestis Nepal516], gi\|229680128\|gb\|E... gi\|229895382, gi... - gi\|229895382\|ref\|ZP_04510555.1\| Phosphodiesterase yfcE [Yersinia pestis Pestoides A], gi\|229701690\|g...	6.0E-33	[1..183]	[1..195]

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Predicted Domain #1

Region A:
Residues: [1-183]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLMFASDIH GSLPATERVL ERFAQSGARW LVILGDVLNH GPRNALPEGY APAQVAERLN  60
   61 AVATQIIAVR GNCDSEVDQM LLHFPITAPW QQILTQERRL FLTHGHLFGP TNLPALHTGD 120
  121 VLVYGHTHLP VAQQQEGLYH FNPGSVSIPK GGYAASYGIL DDNVLSVIAL NDQSIIAQVA 180
  181 INS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.154902
Match:	1su1A
Description:	Structural and biochemical characterization of Yfce, a phosphoesterase from E. coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.632097679642303	bayes_pls_golite062009
hydrolase activity	0.622163661767821	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	0.464762692630572	bayes_pls_golite062009
phosphoric ester hydrolase activity	0.413666548981887	bayes_pls_golite062009
phosphatase activity	0.259632720529593	bayes_pls_golite062009
phosphoprotein phosphatase activity	0.0412556599175502	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: