YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213161317
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E00-7866
Length:	618 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213161317.

Description	E-value	Query Range	Subject Range
gi\|197364010, gi... - gi\|197364010\|ref\|YP_002143647.1\| bifunctional glutathionylspermidine amidase/glutathionylspermidine ... gi\|56415081, gi\|... - gi\|56415081\|ref\|YP_152156.1\| bifunctional glutathionylspermidine amidase/glutathionylspermidine synt...	0.0	[1..618]	[1..618]
gi\|24053453, gi\|... - ref\|NP_708806.1\| glutathionylspermidine synthetase-amidase [Shigella flexneri 2a str. 301], gb\|AAN4... gi\|110806891, gi... - gi\|110806891\|ref\|YP_690411.1\| bifunctional glutathionylspermidine amidase/glutathionylspermidine syn...	0.0	[1..617]	[2..619]
EG12882 - glutathionylspermidine amidase and glutathionylspermidine synthetase / Glutathionylspermidine syntha... gi\|75259934, gi\|... - gi\|75259934\|ref\|ZP_00731212.1\| COG0754: Glutathionylspermidine synthase [Escherichia coli E22], gi\|1... gi\|238861195, gi... - gi\|238902106\|ref\|YP_002927902.1\| fused glutathionylspermidine amidase/glutathionylspermidine synthet... gi\|73857010, gi\|... - gi\|74313533\|ref\|YP_311952.1\| bifunctional glutathionylspermidine amidase/glutathionylspermidine synt... gi\|169753681, gi... - gi\|170018753\|ref\|YP_001723707.1\| bifunctional glutathionylspermidine amidase/glutathionylspermidine ... gi\|75229325, gi\|... - gi\|75229325\|ref\|ZP_00715884.1\| COG0754: Glutathionylspermidine synthase [Escherichia coli B7A], gi\|1... gi\|124526092, gi... - gi\|124526092\|ref\|ZP_01698097.1\| Glutathionylspermidine synthase [Escherichia coli B], gi\|124502196\|g... gi\|169890371, gi... - gi\|170082536\|ref\|YP_001731856.1\| fused glutathionylspermidine amidase; glutathionylspermidine synthe... gi\|193067281, gi... - gi\|75239428\|ref\|ZP_00723399.1\| COG0754: Glutathionylspermidine synthase [Escherichia coli E110019], ... gi\|209920464, gi... - gi\|209920464\|ref\|YP_002294548.1\| bifunctional glutathionylspermidine amidase/glutathionylspermidine ... gi\|85675796, gi\|... - gi\|89109763\|ref\|AP_003543.1\| fused glutathionylspermidine amidase and glutathionylspermidine synthet... gi\|218362330, gi... - gi\|218555562\|ref\|YP_002388475.1\| bifunctional glutathionylspermidine amidase/glutathionylspermidine ... gi\|56480234, gi\|... - gi\|56480234\|ref\|NP_708806.2\| bifunctional glutathionylspermidine amidase/glutathionylspermidine synt... gi\|218696697, gi... - gi\|218696697\|ref\|YP_002404364.1\| bifunctional glutathionylspermidine amidase/glutathionylspermidine ... gi\|82778243, gi\|... - gi\|82778243\|ref\|YP_404592.1\| bifunctional glutathionylspermidine amidase/glutathionylspermidine synt... GSP_ECOLI - Bifunctional glutathionylspermidine synthetase/amidase [Includes: Glutathionylspermidine synthase (E... gi\|82545274, gi\|... - gi\|82545274\|ref\|YP_409221.1\| bifunctional glutathionylspermidine amidase/glutathionylspermidine synt... GSP_SHIFL - Bifunctional glutathionylspermidine synthetase/amidase OS=Shigella flexneri GN=gss PE=3 SV=1 gi\|157077878, gi... - gi\|75187810\|ref\|ZP_00701077.1\| COG0754: Glutathionylspermidine synthase [Escherichia coli E24377A], ... gi\|30064343, gi\|... - gi\|30064343\|ref\|NP_838514.1\| bifunctional glutathionylspermidine amidase/glutathionylspermidine synt... gi\|194426222, gi... - gi\|75212366\|ref\|ZP_00712390.1\| COG0754: Glutathionylspermidine synthase [Escherichia coli B171], gi\|... EG12882 - glutathionylspermidine amidase and glutathionylspermidine synthetase / Glutathionylspermidine syntha... gi\|194424195, gi... - gi\|83587565\|ref\|ZP_00926192.1\| COG0754: Glutathionylspermidine synthase [Escherichia coli 101-1], gi... gi\|187430521, gi... - gi\|75178887\|ref\|ZP_00698923.1\| COG0754: Glutathionylspermidine synthase [Shigella boydii BS512], gi\|...	0.0	[1..617]	[1..618]
gi\|168760143, gi... - gi\|189369377\|gb\|EDU87793.1\| glutathionylspermidine amidase/glutathionylspermidine synthase [Escheric... gi\|168753952, gi... - gi\|189358683\|gb\|EDU77102.1\| glutathionylspermidine amidase/glutathionylspermidine synthase [Escheric... gi\|13363345, gi\|... - gi\|15833127\|ref\|NP_311900.1\| glutathionylspermidine synthetase/amidase [Escherichia coli O157:H7], g... gi\|188017946, gi... - gi\|188017946\|gb\|EDU56068.1\| glutathionylspermidine amidase/glutathionylspermidine synthase [Escheric... gi\|209759892, gi... - pir\|\|A85958 glutathionylspermidine synthetase/amidase [imported] - Escherichia coli (strain O157:H7,... gi\|189379619, gi... - gi\|189379619\|gb\|EDU98035.1\| glutathionylspermidine amidase/glutathionylspermidine synthase [Escheric... gi\|15803533, gi\|... - gi\|15803533\|ref\|NP_289566.1\| bifunctional glutathionylspermidine amidase/glutathionylspermidine synt... gi\|168781859, gi... - gi\|189000509\|gb\|EDU69495.1\| glutathionylspermidine amidase/glutathionylspermidine synthase [Escheric... gi\|168773360, gi... - gi\|187770757\|gb\|EDU34601.1\| glutathionylspermidine amidase/glutathionylspermidine synthase [Escheric... gi\|13363345, gi\|... - gi\|15833127\|ref\|NP_311900.1\| bifunctional glutathionylspermidine amidase/glutathionylspermidine synt... gi\|189363867, gi... - gi\|189363867\|gb\|EDU82286.1\| glutathionylspermidine amidase/glutathionylspermidine synthase [Escheric... gi\|254794945, gi... - gi\|254794945\|ref\|YP_003079782.1\| fused glutathionylspermidine amidase, glutathionylspermidine synthe... gi\|208821174, gi... - gi\|208821174\|ref\|ZP_03261494.1\| glutathionylspermidine amidase/glutathionylspermidine synthase [Esch... gi\|208735830, gi... - gi\|208814553\|ref\|ZP_03255882.1\| glutathionylspermidine amidase/glutathionylspermidine synthase [Esch... gi\|208729153, gi... - gi\|208809352\|ref\|ZP_03251689.1\| glutathionylspermidine amidase/glutathionylspermidine synthase [Esch... gi\|195937134 - gi\|195937134\|ref\|ZP_03082516.1\| bifunctional glutathionylspermidine amidase/glutathionylspermidine s... gi\|217327603, gi... - gi\|217327603\|ref\|ZP_03443686.1\| glutathionylspermidine amidase/glutathionylspermidine synthase [Esch... gi\|215266386, gi... - gi\|215488314\|ref\|YP_002330745.1\| bifunctional glutathionylspermidine amidase/glutathionylspermidine ... gi\|209162003, gi... - gi\|209400603\|ref\|YP_002272467.1\| glutathionylspermidine amidase/glutathionylspermidine synthase [Esc...	0.0	[1..617]	[1..618]
gi\|242378544, gi... - gi\|251786271\|ref\|YP_003000575.1\| hypothetical protein B21_02813 [Escherichia coli BL21], gi\|24237854... gi\|188493893, gi... - gi\|75515214\|ref\|ZP_00737398.1\| COG0754: Glutathionylspermidine synthase [Escherichia coli 53638], gi... gi\|253974843, gi... - gi\|254162942\|ref\|YP_003046050.1\| fused glutathionylspermidine amidase/glutathionylspermidine synthet... gi\|157162468, gi... - gi\|75196952\|ref\|ZP_00707022.1\| COG0754: Glutathionylspermidine synthase [Escherichia coli HS], gi\|15... gi\|254289691, gi... - gi\|254289691\|ref\|YP_003055439.1\| fused glutathionylspermidine amidase/glutathionylspermidine synthet...	0.0	[1..617]	[1..618]
gi\|26249556, gi\|... - gi\|26249556\|ref\|NP_755596.1\| bifunctional glutathionylspermidine amidase/glutathionylspermidine synt...	0.0	[1..617]	[2..619]
gi\|190907225, gi... - gi\|75240556\|ref\|ZP_00724484.1\| COG0754: Glutathionylspermidine synthase [Escherichia coli F11], gi\|1...	0.0	[1..617]	[1..618]
gi\|91073976, gi\|... - gi\|91212402\|ref\|YP_542388.1\| bifunctional glutathionylspermidine amidase/glutathionylspermidine synt... gi\|117625294, gi... - gi\|117625294\|ref\|YP_854466.1\| bifunctional glutathionylspermidine amidase/glutathionylspermidine syn... gi\|237706265, gi... - gi\|237706265\|ref\|ZP_04536746.1\| glutathionylspermidine synthase [Escherichia sp. 3_2_53FAA], gi\|2268...	0.0	[1..617]	[2..619]
gi\|110344819, gi... - gi\|110643227\|ref\|YP_670957.1\| bifunctional glutathionylspermidine amidase/glutathionylspermidine syn...	0.0	[1..617]	[1..618]
TRYS_TRYCR - Trypanothione synthetase OS=Trypanosoma cruzi GN=TRS PE=1 SV=1 TRYS_TRYCC - Trypanothione synthetase OS=Trypanosoma cruzi (strain CL Brener) GN=TRS PE=1 SV=1	0.0	[7..615]	[6..619]

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Predicted Domain #1

Region A:
Residues: [1-618]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKGTTSQDA PFGTLLGYAP GGVAIYSSDY NSLDPWDDDD AAFRSYIDDE YMGHKWQCVE  60
   61 FARRFLFLNY GVVFTDVGMA WEIFSLRFLR EVVNDNILPL QAFPNGSPRA PEAGALLIWQ 120
  121 KGGEFNETGH VAIITQLLDN KIRIAEQNVI HTPLPPGQQW TRELEMVVEN GCYTLRDTFD 180
  181 DTTILGWMIQ TDDTQYSLSQ PDIANQSLAI RGARLPEKGQ FDGQWLDERD PLQKAYVQAN 240
  241 GHVINQDPYQ YFTITESAEQ ELIKATNELH LMYLHATDKV LKDDNLLALF DIPKILWPRL 300
  301 RLSWQRRRHH MITGRMDFCM DERGLKVYEY NADSASCHTE AGLILEKWAE QGYTGKGHNP 360
  361 AEGLINELAG AWKHSKARPF VHIMQDDDIE EDYHAQFMQQ ALHQAGFASK ILRGLGELRW 420
  421 DDAGQLIDGD GRLVNCVWKT WAWETAMEQI REVSETEYAA VPIRTGHPEN EVRLIDVLLR 480
  481 PEVLVFEPLW TVIPGNKAIL PILWSLFPHH RYLLDTDFTV NDELVQTGYA VKPIAGRCGS 540
  541 NIDLVSHQEE LLDKTSGKFA TQKNIYQQLW CLPKVAGKYI QVCTFTVGGN YGGTCLRGDD 600
  601 SLVIKKESDI EPLIVIKA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2io7A
Description:	No description for 2io7A was found.

Predicted functions:

Term	Confidence	Notes
ligase activity	1.06538168486849	bayes_pls_golite062009
catalytic activity	0.663734372840576	bayes_pls_golite062009
hydrolase activity	0.216867729255903	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: