YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|170022160, gi...
Organism:	Escherichia coli ATCC 8739
Length:	126 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|170022160, gi....

Description	E-value	Query Range	Subject Range
gi\|213979794 - gi\|213979794\|ref\|ZP_03407053.1\| hypothetical protein Salmonellaentericaenterica_36988 [Salmonella en... gi\|213852514 - gi\|213852514\|ref\|ZP_03382046.1\| hypothetical protein SentesT_06324 [Salmonella enterica subsp. enter... gi\|213649571 - gi\|213649571\|ref\|ZP_03379624.1\| hypothetical protein SentesTy_21042 [Salmonella enterica subsp. ente... gi\|213425416 - gi\|213425416\|ref\|ZP_03358166.1\| hypothetical protein SentesTyphi_06968 [Salmonella enterica subsp. e... lcl\|NC_016856.1_... - [gene=yigG] [protein=hypothetical protein] [protein_id=YP_005240215.1] [location=complement(4173261.... gi\|214002427 - gi\|214002427\|ref\|ZP_03413162.1\| hypothetical protein Salmonellentericaenterica_19456 [Salmonella ent... gi\|29143669, gi\|... - gi\|29143669\|ref\|NP_807011.1\| hypothetical protein t3343 [Salmonella enterica subsp. enterica serovar... gi\|16762180 - gi\|16762180\|ref\|NP_457797.1\| hypothetical protein STY3605 [Salmonella enterica subsp. enterica serov... gi\|16504483, gi\|... - gi\|25363784\|pir\|\|AD0918 conserved hypothetical protein STY3605 [imported] - Salmonella enterica subs... gi\|16422518, gi\|... - gi\|6960248\|gb\|AAF33438.1\| 58% identity with E. coli hypothetical protein (YIGG) (SP:P27843) [Salmone... gi\|213161542 - gi\|213161542\|ref\|ZP_03347252.1\| hypothetical protein Salmoneentericaenterica_16587 [Salmonella enter...	178.0	[0..1]	[124..25]
gi\|56480444, gi\|... - gi\|56480444\|ref\|NP_709624.2\| hypothetical protein SF3896 [Shigella flexneri 2a str. 301], gi\|5638399... gi\|30064885, gi\|... - gi\|30064885\|ref\|NP_839056.1\| hypothetical protein S3859 [Shigella flexneri 2a str. 2457T], gi\|300431...	171.0	[0..1]	[126..13]
gi\|254039030, gi... - gi\|254039030\|ref\|ZP_04873081.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22683872... gi\|148217, gi\|14... - pir\|\|S30708 hypothetical 15.8K protein (corA-rarD intergenic region) - Escherichia coli (strain K-12... gi\|1790251, gi\|1... - gb\|AAC76821.1\| orf, hypothetical protein; putative membrane protein [Escherichia coli K12], gi\|1613... gi\|148217\|gb\|AAA... - f138 [Escherichia coli]	170.0	[0..1]	[126..13]
gi\|110617038, gi... - gi\|110807490\|ref\|YP_691010.1\| hypothetical protein SFV_3680 [Shigella flexneri 5 str. 8401], gi\|1106...	166.0	[0..1]	[126..13]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRIFIPTSN GKISRRRYIF SFILINFIFA FLIIFFNDGE AGFLVIVSTI VLHYLVINMN  60
   61 CQRLRDSGFI YIKTYVFGTL AVYIISIITM IAEDFACSGN GSMIFLICYF STFSMLMLAP 120
  121 TDSSKQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits