YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213026938
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. 404ty
Length:	151 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213026938.

Description	E-value	Query Range	Subject Range
lcl\|NC_016856.1_... - [gene=STM14_2879] [protein=hypothetical protein] [protein_id=YP_005238414.1] [location=complement(24... gi\|205335819, gi... - gi\|205335819\|gb\|EDZ22583.1\| putative inner membrane protein YfbV [Salmonella enterica subsp. enteric... gi\|167994686, gi... - gi\|205327507\|gb\|EDZ14271.1\| putative inner membrane protein YfbV [Salmonella enterica subsp. enteric... gi\|167549662, gi... - gi\|205325228\|gb\|EDZ13067.1\| putative inner membrane protein YfbV [Salmonella enterica subsp. enteric... YFBV_SALTY - UPF0208 membrane protein yfbV OS=Salmonella typhimurium GN=yfbV PE=3 SV=1 YFBV_SALPA - UPF0208 membrane protein yfbV OS=Salmonella paratyphi A GN=yfbV PE=3 SV=1 YFBV_SALPB - UPF0208 membrane protein YfbV OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=yfbV PE=3 S... YFBV_SALPK - UPF0208 membrane protein YfbV OS=Salmonella paratyphi A (strain AKU_12601) GN=yfbV PE=3 SV=1 gi\|197241649, gi... - gi\|197263394\|ref\|ZP_03163468.1\| putative inner membrane protein YfbV [Salmonella enterica subsp. ent... YFBV_SALA4 - UPF0208 membrane protein YfbV OS=Salmonella agona (strain SL483) GN=yfbV PE=3 SV=1 YFBV_SALCH - UPF0208 membrane protein yfbV OS=Salmonella choleraesuis GN=yfbV PE=3 SV=1 YFBV_SALSV - UPF0208 membrane protein YfbV OS=Salmonella schwarzengrund (strain CVM19633) GN=yfbV PE=3 SV=1 YFBV_SALPB - UPF0208 membrane protein yfbV OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=yfbV PE=3 S... YFBV_SALG2 - UPF0208 membrane protein YfbV OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=yfbV PE=3 SV=... gi\|204929018, gi... - gi\|204929018\|ref\|ZP_03220161.1\| putative inner membrane protein YfbV [Salmonella enterica subsp. ent... gi\|200388557, gi... - gi\|200388557\|ref\|ZP_03215169.1\| putative inner membrane protein YfbV [Salmonella enterica subsp. ent... YFBV_SALDC - UPF0208 membrane protein YfbV OS=Salmonella dublin (strain CT_02021853) GN=yfbV PE=3 SV=1 gi\|195631339, gi... - gi\|195631339\|gb\|EDX49899.1\| putative inner membrane protein YfbV [Salmonella enterica subsp. enteric... gi\|168261645, gi... - gi\|205349627\|gb\|EDZ36258.1\| putative inner membrane protein YfbV [Salmonella enterica subsp. enteric... gi\|205338437, gi... - gi\|205338437\|gb\|EDZ25201.1\| putative inner membrane protein YfbV [Salmonella enterica subsp. enteric... gi\|197289671, gi... - gi\|197289671\|gb\|EDY29034.1\| putative inner membrane protein YfbV [Salmonella enterica subsp. enteric... gi\|194468791, gi... - gi\|194468791\|ref\|ZP_03074775.1\| putative inner membrane protein YfbV [Salmonella enterica subsp. ent... YFBV_SALHS - UPF0208 membrane protein YfbV OS=Salmonella heidelberg (strain SL476) GN=yfbV PE=3 SV=1 YFBV_SALNS - UPF0208 membrane protein YfbV OS=Salmonella newport (strain SL254) GN=yfbV PE=3 SV=1 gi\|205345072, gi... - gi\|205345072\|gb\|EDZ31836.1\| putative inner membrane protein YfbV [Salmonella enterica subsp. enteric... YFBV_SALTY - UPF0208 membrane protein YfbV OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yfb... YFBV_SALPC - UPF0208 membrane protein YfbV OS=Salmonella paratyphi C (strain RKS4594) GN=yfbV PE=3 SV=1 YFBV_SALEP - UPF0208 membrane protein YfbV OS=Salmonella enteritidis PT4 (strain P125109) GN=yfbV PE=3 SV=1 YFBV_SALTY - UPF0208 membrane protein yfbV OS=Salmonella typhimurium GN=yfbV PE=3 SV=1 YFBV_SALCH - UPF0208 membrane protein yfbV OS=Salmonella choleraesuis GN=yfbV PE=3 SV=1 YFBV_SALCH - UPF0208 membrane protein YfbV OS=Salmonella choleraesuis (strain SC-B67) GN=yfbV PE=3 SV=1 YFBV_SALPA - UPF0208 membrane protein YfbV OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=yfbV PE=3 SV=...	5.0E-68	[1..151]	[1..151]
YFBV_ECOLI - UPF0208 membrane protein yfbV - Escherichia coli sp\|B7UFV3\|YFBV_ECO27 - UPF0208 membrane protein yfbV OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=yfbV PE=3 SV=1 YFBV_ECOBW - UPF0208 membrane protein YfbV OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=yfbV PE=3 SV=1 gi\|124526460, gi... - gi\|124526460\|ref\|ZP_01698413.1\| protein of unknown function DUF412 [Escherichia coli B], gi\|12450193... gi\|242377928, gi... - gi\|251785655\|ref\|YP_002999959.1\| hypothetical protein B21_02180 [Escherichia coli BL21], gi\|24237792... gi\|253978372, gi... - gi\|254289065\|ref\|YP_003054813.1\| hypothetical protein ECD_02220 [Escherichia coli BL21(DE3)], gi\|253... YFBV_ECO57 - UPF0208 membrane protein YfbV OS=Escherichia coli O157:H7 GN=yfbV PE=3 SV=1 gi\|253974205, gi... - gi\|254162304\|ref\|YP_003045412.1\| hypothetical protein ECB_02220 [Escherichia coli B str. REL606], gi... gi\|254593587, gi... - gi\|254794187\|ref\|YP_003079024.1\| conserved inner membrane protein [Escherichia coli O157:H7 str. TW1... EG14106 - UPF0208 family inner membrane protein / Ter macrodomain insulation protein; inner membrane protein, ... gi\|217327826, gi... - gi\|217327826\|ref\|ZP_03443909.1\| putative inner membrane protein YfbV [Escherichia coli O157:H7 str. ... YFBV_ECO27 - UPF0208 membrane protein YfbV OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=yfbV PE=3 SV=1 YFBV_ECO81 - UPF0208 membrane protein YfbV OS=Escherichia coli O81 (strain ED1a) GN=yfbV PE=3 SV=1 YFBV_ECO8A - UPF0208 membrane protein YfbV OS=Escherichia coli O8 (strain IAI1) GN=yfbV PE=3 SV=1 YFBV_ECO7I - UPF0208 membrane protein YfbV OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=yfbV PE=3 SV=1 YFBV_ECO55 - UPF0208 membrane protein YfbV OS=Escherichia coli (strain 55989 / EAEC) GN=yfbV PE=3 SV=1 YFBV_ECOLU - UPF0208 membrane protein YfbV OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=yfbV PE=3 S... YFBV_SHIDS - UPF0208 membrane protein YfbV OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=yfbV PE=3 SV=1 YFBV_SHIBS - UPF0208 membrane protein YfbV OS=Shigella boydii serotype 4 (strain Sb227) GN=yfbV PE=3 SV=1 gi\|75230323, gi\|... - gi\|75230323\|ref\|ZP_00716813.1\| COG3092: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|192958547, gi... - gi\|75238078\|ref\|ZP_00722083.1\| COG3092: Uncharacterized protein conserved in bacteria [Escherichia c... YFBV_ECOHS - UPF0208 membrane protein YfbV OS=Escherichia coli O9:H4 (strain HS) GN=yfbV PE=3 SV=1 gi\|194414798, gi... - gi\|75211698\|ref\|ZP_00711777.1\| COG3092: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75512767, gi\|... - gi\|75512767\|ref\|ZP_00735269.1\| COG3092: Uncharacterized protein conserved in bacteria [Escherichia c... YFBV_SHISS - UPF0208 membrane protein YfbV OS=Shigella sonnei (strain Ss046) GN=yfbV PE=3 SV=1 gi\|75243106, gi\|... - gi\|75243106\|ref\|ZP_00726812.1\| COG3092: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|168748146, gi... - gi\|188017175\|gb\|EDU55297.1\| putative inner membrane protein YfbV [Escherichia coli O157:H7 str. EC41... gi\|192931945, gi... - gi\|75259753\|ref\|ZP_00731055.1\| COG3092: Uncharacterized protein conserved in bacteria [Escherichia c... YFBV_SHIB3 - UPF0208 membrane protein YfbV OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=yfbV PE... YFBV_ECO24 - UPF0208 membrane protein YfbV OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=yfbV PE=3 SV=1 gi\|194425057, gi... - gi\|83588278\|ref\|ZP_00926903.1\| COG3092: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|194418451, gi... - gi\|194433357\|ref\|ZP_03065637.1\| putative inner membrane protein YfbV [Shigella dysenteriae 1012], gi... YFBV_ECOSM - UPF0208 membrane protein YfbV OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=yfbV PE=3 SV=1 YFBV_ECOLC - UPF0208 membrane protein YfbV OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=yfbV PE=... gi\|208808811, gi... - gi\|208808811\|ref\|ZP_03251148.1\| putative inner membrane protein YfbV [Escherichia coli O157:H7 str. ... gi\|195935673 - gi\|195935673\|ref\|ZP_03081055.1\| hypothetical protein EscherichcoliO157_04302 [Escherichia coli O157:... gi\|208818745, gi... - gi\|208818745\|ref\|ZP_03259065.1\| putative inner membrane protein YfbV [Escherichia coli O157:H7 str. ... gi\|208812856, gi... - gi\|208812856\|ref\|ZP_03254185.1\| putative inner membrane protein YfbV [Escherichia coli O157:H7 str. ... YFBV_ECOSE - UPF0208 membrane protein YfbV OS=Escherichia coli (strain SE11) GN=yfbV PE=3 SV=1 YFBV_ECO5E - UPF0208 membrane protein YfbV OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=yfbV PE=3 SV=1 gi\|189368315, gi... - gi\|189368315\|gb\|EDU86731.1\| putative inner membrane protein YfbV [Escherichia coli O157:H7 str. EC45... gi\|189357611, gi... - gi\|189357611\|gb\|EDU76030.1\| putative inner membrane protein YfbV [Escherichia coli O157:H7 str. EC44... gi\|187771123, gi... - gi\|187771123\|gb\|EDU34967.1\| putative inner membrane protein YfbV [Escherichia coli O157:H7 str. EC41... gi\|189363014, gi... - gi\|189363014\|gb\|EDU81433.1\| putative inner membrane protein YfbV [Escherichia coli O157:H7 str. EC44... gi\|168787204, gi... - gi\|189372916\|gb\|EDU91332.1\| putative inner membrane protein YfbV [Escherichia coli O157:H7 str. EC86... gi\|189001954, gi... - gi\|189001954\|gb\|EDU70940.1\| putative inner membrane protein YfbV [Escherichia coli O157:H7 str. EC40... YFBV_ECODH - UPF0208 membrane protein YfbV OS=Escherichia coli (strain K12 / DH10B) GN=yfbV PE=3 SV=1 gi\|189378934, gi... - gi\|189378934\|gb\|EDU97350.1\| putative inner membrane protein YfbV [Escherichia coli O157:H7 str. EC50... YFBV_ECOL5 - UPF0208 membrane protein YfbV OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=yfbV PE=3 SV=1 EG14106 - UPF0208 family inner membrane protein / Ter macrodomain insulation protein; inner membrane protein, ... gi\|1799663, gi\|8... - gi\|89109115\|ref\|AP_002895.1\| conserved inner membrane protein [Escherichia coli str. K-12 substr. W3...	5.0E-67	[1..151]	[1..151]
YFBV_ECOL6 - UPF0208 membrane protein YfbV OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yfbV... gi\|227887353, gi... - gi\|227887353\|ref\|ZP_04005158.1\| conserved inner membrane protein [Escherichia coli 83972], gi\|227835... YFBV_ECOL6 - UPF0208 membrane protein yfbV OS=Escherichia coli O6 GN=yfbV PE=3 SV=1	2.0E-66	[1..151]	[1..151]
gi\|15802842, gi\|... - gi\|15802842\|ref\|NP_288869.1\| hypothetical protein Z3556 [Escherichia coli O157:H7 EDL933], gi\|125166... gi\|25303113 - gi\|25303113\|pir\|\|D85870 hypothetical protein Z3556 [imported] - Escherichia coli (strain O157:H7, s...	2.0E-66	[1..151]	[1..151]
YFBV_SHIF8 - UPF0208 membrane protein YfbV OS=Shigella flexneri serotype 5b (strain 8401) GN=yfbV PE=3 SV=1 YFBV_SHIFL - UPF0208 membrane protein YfbV OS=Shigella flexneri GN=yfbV PE=3 SV=1 gi\|30063721, gi\|... - gi\|30063721\|ref\|NP_837892.1\| hypothetical protein S2506 [Shigella flexneri 2a str. 2457T], gi\|300419... gi\|24052732, gi\|... - gi\|24113667\|ref\|NP_708177.1\| hypothetical protein SF2371 [Shigella flexneri 2a str. 301], gi\|2405273...	3.0E-66	[1..151]	[1..151]
YFBV_ECOK1 - UPF0208 membrane protein YfbV OS=Escherichia coli O1:K1 / APEC GN=yfbV PE=3 SV=1 YFBV_ECO45 - UPF0208 membrane protein YfbV OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=yfbV PE=3 SV=1 YFBV_ECOUT - UPF0208 membrane protein YfbV OS=Escherichia coli (strain UTI89 / UPEC) GN=yfbV PE=3 SV=1 gi\|237704771, gi... - gi\|237704771\|ref\|ZP_04535252.1\| membrane protein yfbV [Escherichia sp. 3_2_53FAA], gi\|226901137\|gb\|E...	3.0E-66	[1..151]	[1..151]
gi\|238785674, gi... - gi\|77956854\|ref\|ZP_00820929.1\| COG3092: Uncharacterized protein conserved in bacteria [Yersinia berc...	8.0E-63	[1..151]	[1..151]
gi\|238799410, gi... - gi\|77960596\|ref\|ZP_00824460.1\| COG3092: Uncharacterized protein conserved in bacteria [Yersinia moll...	4.0E-62	[1..151]	[1..151]
Y2595_YERPS - UPF0208 membrane protein YPTB2595 OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=YPTB... Y2690_YERPB - UPF0208 membrane protein YPTS_2690 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=YPTS... Y1552_YERPY - UPF0208 membrane protein YPK_1552 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=YPK_... Y2595_YERPS - UPF0208 membrane protein YPTB2595 OS=Yersinia pseudotuberculosis GN=YPTB2595 PE=3 SV=1 Y1444_YERP3 - UPF0208 membrane protein YpsIP31758_1444 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 317...	5.0E-62	[1..151]	[1..151]
gi\|149365530, gi... - gi\|149365530\|ref\|ZP_01887565.1\| hypothetical protein YPE_0698 [Yersinia pestis CA88-4125], gi\|149291... gi\|166008345, gi... - gi\|166008345\|ref\|ZP_02229243.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|229701793, gi... - gi\|229895307\|ref\|ZP_04510481.1\| conserved inner membrane protein [Yersinia pestis Pestoides A], gi\|2... gi\|166213846, gi... - gi\|166213846\|ref\|ZP_02239881.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|229838107, gi... - gi\|229838107\|ref\|ZP_04458266.1\| conserved inner membrane protein [Yersinia pestis biovar Orientalis ... Y1824_YERPG - UPF0208 membrane protein YpAngola_A1824 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=YpAngola_A... gi\|167052096, gi... - gi\|167399592\|ref\|ZP_02305116.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... Y1972_YERPP - UPF0208 membrane protein YPDSF_1972 OS=Yersinia pestis (strain Pestoides F) GN=YPDSF_1972 PE=3 SV=1 gi\|166958773, gi... - gi\|167422267\|ref\|ZP_02314020.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|167424764, gi... - gi\|167424764\|ref\|ZP_02316517.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|167469099 - gi\|167469099\|ref\|ZP_02333803.1\| hypothetical protein YpesF_14694 [Yersinia pestis FV-1] gi\|165914377, gi... - gi\|89105759\|ref\|ZP_01178273.1\| COG3092: Uncharacterized protein conserved in bacteria [Yersinia pest... Y2054_YERPA - UPF0208 membrane protein YPA_2054 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=YPA_2054 PE=3 S... gi\|165925556, gi... - gi\|165925556\|ref\|ZP_02221388.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... Y2157_YERPN - UPF0208 membrane protein YPN_2157 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=YPN_2157 PE=3 ... gi\|22125518, gi\|... - gi\|22125518\|ref\|NP_668941.1\| hypothetical protein y1623 [Yersinia pestis KIM], gi\|21958416\|gb\|AAM851... gi\|115348261, gi... - gi\|218929650\|ref\|YP_002347525.1\| hypothetical protein YPO2564 [Yersinia pestis CO92], gi\|16122782\|re... gi\|45442164, gi\|... - gi\|45442164\|ref\|NP_993703.1\| hypothetical protein YP_2375 [Yersinia pestis biovar Microtus str. 9100... Y2564_YERPE - UPF0208 membrane protein YPO2564/y1623/YP_2375 OS=Yersinia pestis GN=YPO2564 PE=3 SV=1 gi\|229898668, gi... - gi\|229898668\|ref\|ZP_04513813.1\| conserved inner membrane protein [Yersinia pestis biovar Orientalis ...	5.0E-62	[1..151]	[1..151]

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Predicted Domain #1

Region A:
Residues: [1-151]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTPDNRSVN FFSLFRRGQH YAKTWPMEKR LAPVFVENRV IRMTRYAIRF MPPVAVFTLC  60
   61 WQIALGGQLG PAVATALFAL SLPMQGLWWL GKRSLTPLPP SILNWFYEVR GKLQEAGQAL 120
  121 APVEGKPDYQ ALADTLKRAF KQLDKTFLDD L

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	106.886057
Match:	PF04217.4
Description:	No description for PF04217.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits