YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|193908259, gi...
Organism:	Drosophila mojavensis
Length:	104 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|193908259, gi....

Description	E-value	Query Range	Subject Range
gi\|73964238 - gi\|73964238\|ref\|XP_537493.2\| PREDICTED: similar to Enhancer of rudimentary homolog [Canis familiaris...	198.0	[0..1]	[99..53]
gi\|54643300, gi\|... - gi\|54643300\|gb\|EAL32044.1\| GA15053-PA [Drosophila pseudoobscura], gi\|125981969\|ref\|XP_001354988.1\| G...	196.0	[0..1]	[103..1]
gi\|85543920, gi\|... - gi\|85543920\|pdb\|1WWQ\|A Chain A, Solution Structure Of Mouse Er, gi\|159163463\|pdb\|1WWQ\|A Chain A, Sol...	193.0	[0..1]	[99..8]
FBpp0301768, e(r... - The gene enhancer of rudimentary is referred to in FlyBase by the symbol Dmel\e(r) (CG1871, FBgn0011... gi\|194129198, gi... - gi\|195354939\|ref\|XP_002043953.1\| GM13693 [Drosophila sechellia], gi\|194129198\|gb\|EDW51241.1\| GM13693... gi\|194202677, gi... - gi\|195563838\|ref\|XP_002077561.1\| GD15793 [Drosophila simulans], gi\|194202677\|gb\|EDX16253.1\| GD15793 ... gi\|220953018, gi... - gi\|220953018\|gb\|ACL89052.1\| e(r)-PA [synthetic construct], gi\|220942814\|gb\|ACL83950.1\| e(r)-PA [synt...	192.0	[0..1]	[103..1]
gi\|110748988 - gi\|110748988\|ref\|XP_001119900.1\| PREDICTED: similar to enhancer of rudimentary CG1871-PA, isoform A ...	190.0	[0..1]	[99..1]
ERH_AEDAE - Enhancer of rudimentary homolog OS=Aedes aegypti PE=3 SV=1	189.0	[0..1]	[99..1]
gi\|60653899, gi\|... - gi\|60653899\|gb\|AAX29642.1\| enhancer of rudimentary-like [synthetic construct], gi\|30583969\|gb\|AAP362...	189.0	[0..1]	[99..1]
gi\|6841073, gi\|1... - gi\|6841073\|gb\|AAF28892.1\|AF124330_1 enhancer of rudimentary homologue ERH [Xenopus laevis], gb\|AAH86... jgi\|Xentr4\|29327... - null gi\|114653669, gi... - gi\|55640957\|ref\|XP_510031.1\| PREDICTED: enhancer of rudimentary homolog isoform 2 [Pan troglodytes],... tr\|G1TKN7\|G1TKN7... - pep:novel chromosome:oryCun2:20:11583420:11583734:-1 gene:ENSOCUG00000025110 transcript:ENSOCUT00000... CCDS9794.1_1 - null gi\|109479584, gi... - gi\|187469487\|gb\|AAI66864.1\| Erh protein [Rattus norvegicus], gi\|149025016\|gb\|EDL81383.1\| rCG20904, i... ERH_MOUSE - Enhancer of rudimentary homolog OS=Mus musculus GN=Erh PE=1 SV=1 tr\|F7AUD4\|F7AUD4... - Enhancer of rudimentary homolog OS=Equus caballus OX=9796 GN=ERH PE=3 SV=1 gi\|194038479 - gi\|194038479\|ref\|XP_001926195.1\| PREDICTED: similar to enhancer of rudimentary homolog [Sus scrofa] gi\|61362236 - gi\|61362236\|gb\|AAX42183.1\| enhancer of rudimentary-like [synthetic construct] gi\|221220016, gi... - gi\|221220016\|gb\|ACM08669.1\| Enhancer of rudimentary homolog [Salmo salar], gi\|209730338\|gb\|ACI66038.... ERH_BOVIN - Enhancer of rudimentary homolog OS=Bos taurus GN=ERH PE=3 SV=1 ERH - enhancer of rudimentary homolog (Drosophila) gi\|109084078 - gi\|109084078\|ref\|XP_001109334.1\| PREDICTED: similar to Enhancer of rudimentary homolog [Macaca mulat... gi\|225714846 - gi\|225714846\|gb\|ACO13269.1\| Enhancer of rudimentary homolog [Esox lucius]	189.0	[0..1]	[99..1]
ERH_DANRE - Enhancer of rudimentary homolog OS=Danio rerio GN=erh PE=3 SV=1	188.0	[0..1]	[99..1]
gi\|31203255, gi\|... - gi\|31203255\|ref\|XP_310576.1\| AGAP000516-PA [Anopheles gambiae str. PEST], gi\|21294285\|gb\|EAA06430.1\|... AGAP000515-PA, A... - Enhancer of rudimentary protein\|protein_coding\|X:9111183:9111574:-1\|gene:AGAP000515, Enhancer of rud...	186.0	[0..1]	[99..1]

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Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHTILLVQP GARPETRTYC DYESVNECME GVCKIYEEHL KRRNPNTPTI TYDISQLFDF  60
   61 IDTLIDISCL VYQKSTNTYA PYNKDWIKEK IYVLLRQAAF SPNA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.0
Match:	1wwqA
Description:	Solution Structure of Mouse ER
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits