YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|167552204, gi...
Organism:	Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29
Length:	239 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|167552204, gi....

Description	E-value	Query Range	Subject Range
DEOD_PHOLL - Purine nucleoside phosphorylase deoD-type OS=Photorhabdus luminescens subsp. laumondii GN=deoD PE=3 ... DEOD_PHOLL - Purine nucleoside phosphorylase DeoD-type OS=Photorhabdus luminescens subsp. laumondii (strain DSM 1...	6.0E-65	[1..238]	[1..238]
gi\|77973607 - gi\|77973607\|ref\|ZP_00829153.1\| COG0813: Purine-nucleoside phosphorylase [Yersinia frederiksenii ATCC...	1.0E-64	[1..238]	[1..238]
gi\|77959706 - gi\|77959706\|ref\|ZP_00823723.1\| COG0813: Purine-nucleoside phosphorylase [Yersinia bercovieri ATCC 43...	2.0E-64	[1..238]	[1..238]
DEOD_XENNA - Purine nucleoside phosphorylase DeoD-type OS=Xenorhabdus nematophila (strain ATCC 19061 / DSM 3370 /... DEOD_XENNE - Purine nucleoside phosphorylase deoD-type OS=Xenorhabdus nematophilus GN=deoD PE=3 SV=1	3.0E-64	[1..237]	[1..237]
DEOD_SALTY - Purine nucleoside phosphorylase deoD-type OS=Salmonella typhimurium GN=deoD PE=3 SV=1 DEOD_SALHS - Purine nucleoside phosphorylase DeoD-type OS=Salmonella heidelberg (strain SL476) GN=deoD PE=3 SV=1 gi\|205336642, gi... - gi\|205336642\|gb\|EDZ23406.1\| purine nucleoside phosphorylase [Salmonella enterica subsp. enterica ser... gi\|205331456, gi... - gi\|205331456\|gb\|EDZ18220.1\| purine nucleoside phosphorylase [Salmonella enterica subsp. enterica ser... lcl\|NC_016856.1_... - [gene=deoD] [protein=purine nucleoside phosphorylase] [protein_id=YP_005240914.1] [location=4837974.... DEOD_SALTY - Purine nucleoside phosphorylase deoD-type OS=Salmonella typhimurium GN=deoD PE=3 SV=1 DEOD_SALTY - Purine nucleoside phosphorylase DeoD-type OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 70... gi\|197240110, gi... - gi\|197261855\|ref\|ZP_03161929.1\| purine nucleoside phosphorylase [Salmonella enterica subsp. enterica...	3.0E-64	[1..239]	[1..239]
gi\|77960324 - gi\|77960324\|ref\|ZP_00824201.1\| COG0813: Purine-nucleoside phosphorylase [Yersinia mollaretii ATCC 43...	3.0E-64	[1..238]	[1..238]
gi\|227885127, gi... - gi\|227885127\|ref\|ZP_04002932.1\| purine-nucleoside phosphorylase [Escherichia coli 83972], gi\|2278379... gi\|26111707, gi\|... - gi\|26251274\|ref\|NP_757314.1\| purine nucleoside phosphorylase [Escherichia coli CFT073], gi\|26111707\|...	3.0E-64	[1..239]	[20..258]
gi\|188014904, gi... - gi\|188014904\|gb\|EDU53026.1\| purine nucleoside phosphorylase [Escherichia coli O157:H7 str. EC4113], ... gi\|168756804, gi... - gi\|189356061\|gb\|EDU74480.1\| purine nucleoside phosphorylase [Escherichia coli O157:H7 str. EC4401], ... gi\|168762738, gi... - gi\|189366978\|gb\|EDU85394.1\| purine nucleoside phosphorylase [Escherichia coli O157:H7 str. EC4501], ... DEOD_ECOLI - Purine nucleoside phosphorylase deoD-type (EC 2.4.2.1) (PNP) (Inosine phosphorylase) - Escherichia c... gi\|189364163, gi... - gi\|189364163\|gb\|EDU82582.1\| purine nucleoside phosphorylase [Escherichia coli O157:H7 str. EC4486], ... DEOD_ECO57 - Purine nucleoside phosphorylase DeoD-type OS=Escherichia coli O157:H7 GN=deoD PE=1 SV=2 gi\|168776636, gi... - gi\|187768014\|gb\|EDU31858.1\| purine nucleoside phosphorylase [Escherichia coli O157:H7 str. EC4196], ... EG10222 - purine nucleoside phosphorylase 1; nicotinamide 1-beta-D-riboside phosphorylase / Purine nucleoside ... gi\|189000743, gi... - gi\|189000743\|gb\|EDU69729.1\| purine nucleoside phosphorylase [Escherichia coli O157:H7 str. EC4076], ... gi\|15804956, gi\|... - gi\|15804956\|ref\|NP_290998.1\| purine nucleoside phosphorylase [Escherichia coli O157:H7 EDL933], gi\|1... gi\|189375140, gi... - gi\|189375140\|gb\|EDU93556.1\| purine nucleoside phosphorylase [Escherichia coli O157:H7 str. EC869], g... gi\|168797958, gi... - gi\|189379510\|gb\|EDU97926.1\| purine nucleoside phosphorylase [Escherichia coli O157:H7 str. EC508], g... gi\|89111092, gi\|... - gi\|89111092\|ref\|AP_004872.1\| purine-nucleoside phosphorylase [Escherichia coli str. K-12 substr. W31... gi\|217321811, gi... - gi\|217325590\|ref\|ZP_03441674.1\| purine nucleoside phosphorylase [Escherichia coli O157:H7 str. TW145... DEOD_ESCF3 - Purine nucleoside phosphorylase DeoD-type OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 /... gi\|75234547, gi\|... - gi\|75234547\|ref\|ZP_00718888.1\| COG0813: Purine-nucleoside phosphorylase [Escherichia coli E110019], ... DEOD_ECO8A - Purine nucleoside phosphorylase DeoD-type OS=Escherichia coli O8 (strain IAI1) GN=deoD PE=3 SV=1 gi\|192926720, gi... - gi\|75256296\|ref\|ZP_00727968.1\| COG0813: Purine-nucleoside phosphorylase [Escherichia coli E22], gi\|1... DEOD_ECO45 - Purine nucleoside phosphorylase DeoD-type OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=deoD PE... DEOD_ECO55 - Purine nucleoside phosphorylase DeoD-type OS=Escherichia coli (strain 55989 / EAEC) GN=deoD PE=3 SV=... DEOD_ECOLU - Purine nucleoside phosphorylase DeoD-type OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN... gi\|15834597, gi\|... - gi\|15834597\|ref\|NP_313370.1\| purine nucleoside phosphorylase [Escherichia coli O157:H7 str. Sakai], ... DEOD_ECODH - Purine nucleoside phosphorylase DeoD-type OS=Escherichia coli (strain K12 / DH10B) GN=deoD PE=3 SV=1 EG10222 - purine nucleoside phosphorylase 1; nicotinamide 1-beta-D-riboside phosphorylase / Purine nucleoside ... gi\|194439314, gi... - gi\|83585292\|ref\|ZP_00923940.1\| COG0813: Purine-nucleoside phosphorylase [Escherichia coli 101-1], gi... DEOD_ECOSM - Purine nucleoside phosphorylase DeoD-type OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=deoD PE=3 ... gi\|195937655 - gi\|195937655\|ref\|ZP_03083037.1\| purine nucleoside phosphorylase [Escherichia coli O157:H7 str. EC402... gi\|208726726, gi... - gi\|208806925\|ref\|ZP_03249262.1\| purine nucleoside phosphorylase [Escherichia coli O157:H7 str. EC420... DEOD_ECOHS - Purine nucleoside phosphorylase DeoD-type OS=Escherichia coli O9:H4 (strain HS) GN=deoD PE=3 SV=1 gi\|208735384, gi... - gi\|208814107\|ref\|ZP_03255436.1\| purine nucleoside phosphorylase [Escherichia coli O157:H7 str. EC404... gi\|75209588, gi\|... - gi\|75209588\|ref\|ZP_00709806.1\| COG0813: Purine-nucleoside phosphorylase [Escherichia coli B171], gi\|... gi\|208740486, gi... - gi\|208820363\|ref\|ZP_03260683.1\| purine nucleoside phosphorylase [Escherichia coli O157:H7 str. EC404... DEOD_SHIB3 - Purine nucleoside phosphorylase DeoD-type OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512... DEOD_ECO5E - Purine nucleoside phosphorylase DeoD-type OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=deoD... DEOD_ECO24 - Purine nucleoside phosphorylase DeoD-type OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=de... DEOD_ECOSE - Purine nucleoside phosphorylase DeoD-type OS=Escherichia coli (strain SE11) GN=deoD PE=3 SV=1 DEOD_SHISS - Purine nucleoside phosphorylase DeoD-type OS=Shigella sonnei (strain Ss046) GN=deoD PE=3 SV=1 DEOD_ECOBW - Purine nucleoside phosphorylase DeoD-type OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=deoD... gi\|254595780, gi... - gi\|254796380\|ref\|YP_003081217.1\| purine-nucleoside phosphorylase [Escherichia coli O157:H7 str. TW14... DEOD_SHIBS - Purine nucleoside phosphorylase DeoD-type OS=Shigella boydii serotype 4 (strain Sb227) GN=deoD PE=3 ...	5.0E-64	[1..239]	[1..239]
gi\|91075674, gi\|... - gi\|91214100\|ref\|YP_544086.1\| purine nucleoside phosphorylase [Escherichia coli UTI89], gi\|91075674\|g... gi\|115515866, gi... - gi\|117626742\|ref\|YP_860065.1\| purine nucleoside phosphorylase [Escherichia coli APEC O1], gi\|1155158...	5.0E-64	[1..239]	[20..258]
DEOD_ECO27 - Purine nucleoside phosphorylase DeoD-type OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=de... gi\|253980370, gi... - gi\|254291061\|ref\|YP_003056811.1\| purine nucleoside phosphorylase [Escherichia coli BL21(DE3)], gi\|25... DEOD_ECO81 - Purine nucleoside phosphorylase DeoD-type OS=Escherichia coli O81 (strain ED1a) GN=deoD PE=3 SV=1 gi\|251787633, gi... - gi\|251787633\|ref\|YP_003001937.1\| hypothetical protein B21_04226 [Escherichia coli BL21], gi\|24237990... gi\|124499244, gi... - gi\|124530353\|ref\|ZP_01701039.1\| purine nucleoside phosphorylase [Escherichia coli B], gi\|124499244\|g... DEOD_ECOL6 - Purine nucleoside phosphorylase DeoD-type OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / U... gi\|254164310, gi... - gi\|254164310\|ref\|YP_003047420.1\| purine nucleoside phosphorylase [Escherichia coli B str. REL606], g... gi\|162138297 - gi\|162138297\|ref\|YP_544086.2\| purine nucleoside phosphorylase [Escherichia coli UTI89] gi\|254037396, gi... - gi\|254037396\|ref\|ZP_04871473.1\| purine nucleoside phosphorylase [Escherichia sp. 1_1_43], gi\|2268405... DEOD_ECOLC - Purine nucleoside phosphorylase DeoD-type OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks)... DEOD_ECO7I - Purine nucleoside phosphorylase DeoD-type OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=deoD P... DEOD_ECOL6 - Purine nucleoside phosphorylase deoD-type OS=Escherichia coli O6 GN=deoD PE=3 SV=2 DEOD_SHIF8 - Purine nucleoside phosphorylase DeoD-type OS=Shigella flexneri serotype 5b (strain 8401) GN=deoD PE=... gi\|56384162, gi\|... - gi\|56480611\|ref\|NP_710124.2\| purine nucleoside phosphorylase [Shigella flexneri 2a str. 301], gi\|563... gi\|75515575, gi\|... - gi\|75515575\|ref\|ZP_00737732.1\| COG0813: Purine-nucleoside phosphorylase [Escherichia coli 53638], gi... gi\|190906521, gi... - gi\|75239553\|ref\|ZP_00723523.1\| COG0813: Purine-nucleoside phosphorylase [Escherichia coli F11], gi\|1... DEOD_ECOL5 - Purine nucleoside phosphorylase DeoD-type OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=deoD... gi\|75229444, gi\|... - gi\|75229444\|ref\|ZP_00715994.1\| COG0813: Purine-nucleoside phosphorylase [Escherichia coli B7A], gi\|1... gi\|30043886, gi\|... - gi\|30065622\|ref\|NP_839793.1\| purine nucleoside phosphorylase [Shigella flexneri 2a str. 2457T], gi\|3... sp\|B7UR12\|DEOD_ECO27 - Purine nucleoside phosphorylase deoD-type OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=de... gi\|237704121, gi... - gi\|237704121\|ref\|ZP_04534602.1\| purine nucleoside phosphorylase [Escherichia sp. 3_2_53FAA], gi\|2269... DEOD_SHIFL - Purine nucleoside phosphorylase DeoD-type OS=Shigella flexneri GN=deoD PE=3 SV=4	7.0E-64	[1..239]	[1..239]

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Predicted Domain #1

Region A:
Residues: [1-239]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATPHINAEM GDFADVVLMP GDPLRAKHIA ETFLEDVREV NNVRGMLGFT GTYKGRKISV  60
   61 MGHGMGIPSC SIYTKELITD FGVKKIIRVG SCGAVRMDVK LRDVVIGMGA CTDSKVNRIR 120
  121 FKDHDFAAIA DFDMVRNAVD AAKALGVDAR VGNLFSADLF YSPDGEMFDV MEKYGVLGVE 180
  181 MEAAGIYGVA AEFGAKALTI CTVSDHIRTH EQTTAAERQT TFNDMIKIAL ESVLLGDKE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	65.522879
Match:	1pr0A
Description:	Escherichia coli Purine Nucleoside Phosphorylase Complexed with Inosine and Phosphate/Sulfate
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
purine-nucleoside phosphorylase activity	3.68206997938506	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	3.66765825367784	bayes_pls_golite062009
catalytic activity	2.18268586151113	bayes_pls_golite062009
transferase activity, transferring pentosyl groups	2.01261001022129	bayes_pls_golite062009
S-methyl-5-thioadenosine phosphorylase activity	1.6959166270803	bayes_pls_golite062009
transferase activity	1.42022417161912	bayes_pls_golite062009
nucleobase binding	1.33291775180025	bayes_pls_golite062009
nucleoside binding	1.11256863177576	bayes_pls_golite062009
purine binding	1.00226077276304	bayes_pls_golite062009
binding	0.192121943858605	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: