YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|209395606, gi...
Organism:	Escherichia coli O157:H7 str. EC4115
Length:	52 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|209395606, gi....

Description	E-value	Query Range	Subject Range
gi\|195936128 - gi\|195936128\|ref\|ZP_03081510.1\| hypothetical protein EscherichcoliO157_06636 [Escherichia coli O157:... gi\|209777642, gi... - pir\|\|G85556 hypothetical protein Z0721 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|15800295, gi\|... - gi\|15800295\|ref\|NP_286307.1\| hypothetical protein Z0721 [Escherichia coli O157:H7 EDL933], gi\|125134... gi\|254591147, gi... - gi\|254791747\|ref\|YP_003076584.1\| hypothetical protein ECSP_0634 [Escherichia coli O157:H7 str. TW143...	77.0	[0..1]	[52..47]
gi\|9507608, gi\|5... - gi\|9507608\|ref\|NP_052939.1\| small toxic polypeptide [Plasmid R100], gi\|5103207\|dbj\|BAA78843.1\| post-... gi\|58383263, gi\|... - gi\|58383263\|ref\|YP_194833.1\| small toxic polypeptide [Salmonella typhimurium], gi\|37962742\|gb\|AAR056... gi\|170522121, gi... - gi\|170650845\|ref\|YP_001739938.1\| stable plasmid inheritance protein Hok [Escherichia coli SMS-3-5], ... HOK_ECOLX - Protein hok OS=Escherichia coli GN=hok PE=3 SV=1 gi\|37962742\|gb\|A... - post-segregation killing protein [Salmonella typhimurium], post-segregation killing protein [Salmone... gi\|118197020 - gi\|118197020\|emb\|CAL69696.1\| killer protein [Escherichia coli]	77.0	[0..1]	[52..1]
gi\|38259540, gi\|... - gi\|38348063\|ref\|NP_941312.1\| small toxic polypeptide [Serratia marcescens], gi\|38259540\|emb\|CAE51768... gi\|226426016, gi... - gi\|226810103\|ref\|YP_002791798.1\| hypothetical protein pEC-IMPQ_230 [Enterobacter cloacae], gi\|226807...	74.0	[0..1]	[52..1]
gi\|160431875, gi... - gi\|160431875\|ref\|YP_001551989.1\| small toxic polypeptide [Salmonella enterica subsp. enterica serova... gi\|145849097 - gi\|145849097\|emb\|CAM91663.1\| putative stable plasmid inheritance protein [Salmonella enterica] gi\|16505979, gi\|... - gi\|18466663\|ref\|NP_569471.1\| small toxic polypeptide [Salmonella enterica subsp. enterica serovar Ty...	73.0	[0..1]	[52..1]
gi\|10955445, gi\|... - gi\|9971639\|dbj\|BAB12590.1\| yaeB [Escherichia coli], gi\|10955445\|ref\|NP_065297.1\| post-segregation ki...	73.0	[0..1]	[50..1]
gi\|10957290, gi\|... - gi\|7800343\|gb\|AAF69939.1\|AF250878_100 plasmid maintenance protein [Salmonella typhi], gi\|10957290\|re... gi\|7800343\|gb\|AA... - plasmid maintenance protein [Salmonella typhi], plasmid maintenance protein [Salmonella typhi]	73.0	[0..1]	[52..20]

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Predicted Domain #1

Region A:
Residues: [1-52]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLPRSSLVW CVLIVCLTLL IFTYLTRKSL CEIRYRDGYR EVAAFMAYES GK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.415	d.230.3	Amyloid beta a4 protein copper binding domain (domain 2)
View	Download	0.339	d.230.4	Description not found.
View	Download	0.318	b.122.1	PUA domain-like
View	Download	0.275	d.37.1	CBS-domain
View	Download	0.267	d.71.1	Cell division protein MinE topological specificity domain
View	Download	0.267	d.71.1	Cell division protein MinE topological specificity domain
View	Download	0.263	d.306.1	Description not found.
View	Download	0.247	d.80.1	Tautomerase/MIF
View	Download	0.236	d.230.3	Amyloid beta a4 protein copper binding domain (domain 2)
View	Download	0.235	d.71.1	Cell division protein MinE topological specificity domain
View	Download	0.235	d.71.1	Cell division protein MinE topological specificity domain
View	Download	0.221	d.71.1	Cell division protein MinE topological specificity domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits