YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254524088, gi...
Organism:	Stenotrophomonas sp. SKA14
Length:	76 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254524088, gi....

Description	E-value	Query Range	Subject Range
RS18_PSYWF - 30S ribosomal protein S18 OS=Psychrobacter sp. (strain PRwf-1) GN=rpsR PE=3 SV=1	114.0	[0..1]	[74..1]
RS18_PSYA2 - 30S ribosomal protein S18 OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=rpsR PE=3 SV=1 RS18_PSYCK - 30S ribosomal protein S18 OS=Psychrobacter cryohalolentis (strain K5) GN=rpsR PE=3 SV=1	114.0	[0..1]	[74..1]
RS18_PSYIN - 30S ribosomal protein S18 OS=Psychromonas ingrahamii (strain 37) GN=rpsR PE=3 SV=1	110.0	[0..1]	[75..1]
gi\|223479392, gi... - gi\|254427140\|ref\|ZP_05040847.1\| ribosomal protein S18 [Alcanivorax sp. DG881], gi\|223479392\|ref\|YP_0... RS18_ALCBS - 30S ribosomal protein S18 OS=Alcanivorax borkumensis (strain ATCC 700651 / DSM 11573 / NCIMB 13689 /...	109.0	[0..1]	[74..1]
RS18_THICR - 30S ribosomal protein S18 OS=Thiomicrospira crunogena (strain XCL-2) GN=rpsR PE=3 SV=1	109.0	[0..1]	[75..1]
RS18_PASMU - 30S ribosomal protein S18 OS=Pasteurella multocida GN=rpsR PE=3 SV=1 RS18_PASMU - 30S ribosomal protein S18 OS=Pasteurella multocida (strain Pm70) GN=rpsR PE=3 SV=1 tr\|J5NCM8\|J5NCM8... - 30S ribosomal protein S18 OS=Pasteurella multocida subsp. multocida str. Anand1_cattle GN=rpsR PE=3 ...	109.0	[0..1]	[74..1]
gi\|90408976, gi\|... - gi\|90408976\|ref\|ZP_01217108.1\| ribosomal protein S18 [Psychromonas sp. CNPT3], gi\|90309924\|gb\|EAS380...	109.0	[0..1]	[75..1]
RS18_KORVE - 30S ribosomal protein S18 OS=Koribacter versatilis (strain Ellin345) GN=rpsR PE=3 SV=1	108.0	[0..3]	[70..52]
RS18_ALKEH - 30S ribosomal protein S18 OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) G...	108.0	[0..1]	[74..1]
RS18_ACTPJ - 30S ribosomal protein S18 OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=rpsR PE=3 S... RS18_ACTP7 - 30S ribosomal protein S18 OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=rpsR PE=3 S... gi\|167855349, gi... - gi\|167855349\|ref\|ZP_02478116.1\| 30S ribosomal protein S18 [Haemophilus parasuis 29755], gi\|167853497... RS18_HAEPS - 30S ribosomal protein S18 OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=rpsR PE=3 SV=1 gi\|145272140, gi... - gi\|145638545\|ref\|ZP_01794154.1\| 30S ribosomal protein S18 [Haemophilus influenzae PittII], gi\|145272... gi\|229812545, gi... - gi\|229844296\|ref\|ZP_04464436.1\| 30S ribosomal protein S18 [Haemophilus influenzae 6P18H1], gi\|229812... gi\|145269360, gi... - gi\|145637414\|ref\|ZP_01793073.1\| 30S ribosomal protein S18 [Haemophilus influenzae PittHH], gi\|145269... gi\|229810721, gi... - gi\|229846628\|ref\|ZP_04466736.1\| 30S ribosomal protein S18 [Haemophilus influenzae 7P49H1], gi\|229810... gi\|145635374, gi... - gi\|145635374\|ref\|ZP_01791076.1\| 30S ribosomal protein S18 [Haemophilus influenzae PittAA], gi\|145267... gi\|144985872, gi... - gi\|145633503\|ref\|ZP_01789232.1\| 30S ribosomal protein S18 [Haemophilus influenzae 3655], gi\|14498587... RS18_HAEDU - 30S ribosomal protein S18 OS=Haemophilus ducreyi GN=rpsR PE=3 SV=2 gi\|145640518, gi... - gi\|145640518\|ref\|ZP_01796102.1\| 30S ribosomal protein S18 [Haemophilus influenzae R3021], gi\|1456302... RS18_HAEIN - 30S ribosomal protein S18 OS=Haemophilus influenzae GN=rpsR PE=3 SV=2 gi\|145628926, gi... - gi\|145628926\|ref\|ZP_01784726.1\| 30S ribosomal protein S18 [Haemophilus influenzae 22.1-21], gi\|14497... gi\|32033888 - gi\|32033888\|ref\|ZP_00134159.1\| COG0238: Ribosomal protein S18 [Actinobacillus pleuropneumoniae serov... gi\|42629993 - gi\|42629993\|ref\|ZP_00155538.1\| COG0238: Ribosomal protein S18 [Haemophilus influenzae R2846] gi\|42630826 - gi\|42630826\|ref\|ZP_00156365.1\| COG0238: Ribosomal protein S18 [Haemophilus influenzae R2866] RS18_HAEIN - 30S ribosomal protein S18 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=r... RS18_HAEDU - 30S ribosomal protein S18 OS=Haemophilus ducreyi (strain 35000HP / ATCC 700724) GN=rpsR PE=3 SV=2 RS18_HAEI8 - 30S ribosomal protein S18 OS=Haemophilus influenzae (strain 86-028NP) GN=rpsR PE=3 SV=1 gi\|153093304, gi... - gi\|254361769\|ref\|ZP_04977904.1\| ribosomal protein S18 [Mannheimia haemolytica PHL213], gi\|197748945\|... RS18_HAEIG - 30S ribosomal protein S18 OS=Haemophilus influenzae (strain PittGG) GN=rpsR PE=3 SV=1 RS18_HAEIE - 30S ribosomal protein S18 OS=Haemophilus influenzae (strain PittEE) GN=rpsR PE=3 SV=1 gi\|145640518, gi... - gi\|145640518\|ref\|ZP_01796102.1\| 30S ribosomal protein S18 [Haemophilus influenzae R3021], gi\|1449840...	108.0	[0..1]	[74..1]

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Predicted Domain #1

Region A:
Residues: [1-76]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKFFRRRKF CKFTAEGVKE IDYKDLNTLR QYLTENGKIV PSRVTGTKSK YQRQLATAVK  60
   61 RARFLALIPY TDNHDV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.69897
Match:	1vs5R
Description:	No description for 1vs5R was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits