YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213609715
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E98-2068
Length:	87 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213609715.

Description	E-value	Query Range	Subject Range
Y794_SODGM - UPF0250 protein SG0794 OS=Sodalis glossinidius (strain morsitans) GN=SG0794 PE=3 SV=1	145.0	[0..1]	[87..1]
gi\|238790456, gi... - gi\|77973027\|ref\|ZP_00828580.1\| COG2921: Uncharacterized conserved protein [Yersinia frederiksenii AT...	143.0	[0..1]	[87..1]
gi\|58176674 - gi\|58176674\|pdb\|1RWU\|A Chain A, Solution Structure Of Conserved Protein Ybed From E. Coli	142.0	[0..1]	[87..23]
gi\|229700860, gi... - gi\|229895937\|ref\|ZP_04511107.1\| conserved protein [Yersinia pestis Pestoides A], gi\|229700860\|gb\|EEO... gi\|229688291, gi... - gi\|229898743\|ref\|ZP_04513888.1\| conserved protein [Yersinia pestis biovar Orientalis str. India 195]... gi\|166008480, gi... - gi\|166008480\|ref\|ZP_02229378.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|165925337, gi... - gi\|165925337\|ref\|ZP_02221169.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... Y1853_YERPG - UPF0250 protein YpAngola_A1853 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=YpAngola_A1853 PE=3... Y2499_YERPA - UPF0250 protein YPA_2499 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=YPA_2499 PE=3 SV=1 Y2953_YERP3 - UPF0250 protein YpsIP31758_2953 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=Yp... Y1085_YERPN - UPF0250 protein YPN_1085 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=YPN_1085 PE=3 SV=1 gi\|149365499, gi... - gi\|149365499\|ref\|ZP_01887534.1\| hypothetical protein YPE_0664 [Yersinia pestis CA88-4125], gi\|149291... Y2653_YERPP - UPF0250 protein YPDSF_2653 OS=Yersinia pestis (strain Pestoides F) GN=YPDSF_2653 PE=3 SV=1 Y2600_YERPE - UPF0250 protein YPO2600/y1174/YP_1113 OS=Yersinia pestis GN=YPO2600 PE=3 SV=1 gi\|89102291, gi\|... - gi\|89102291\|ref\|ZP_01174936.1\| COG2921: Uncharacterized conserved protein [Yersinia pestis biovar Or... gi\|45435802, gi\|... - gi\|45440943\|ref\|NP_992482.1\| hypothetical protein YP_1113 [Yersinia pestis biovar Microtus str. 9100... gi\|22125077, gi\|... - gi\|22125077\|ref\|NP_668500.1\| hypothetical protein y1174 [Yersinia pestis KIM], gi\|21957930\|gb\|AAM847... gi\|16122813, gi\|... - gi\|218929681\|ref\|YP_002347556.1\| hypothetical protein YPO2600 [Yersinia pestis CO92], gi\|16122813\|re... Y1093_YERPS - UPF0250 protein YPTB1093 OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=YPTB1093 PE=3... Y1093_YERPS - UPF0250 protein YPTB1093 OS=Yersinia pseudotuberculosis GN=YPTB1093 PE=3 SV=1 gi\|167399624, gi... - gi\|167399624\|ref\|ZP_02305148.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|166206303, gi... - gi\|166212372\|ref\|ZP_02238407.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167057690, gi... - gi\|167423520\|ref\|ZP_02315273.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|167422548, gi... - gi\|167422548\|ref\|ZP_02314301.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... Y1150_YERPB - UPF0250 protein YPTS_1150 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=YPTS_1150 PE=... Y3025_YERPY - UPF0250 protein YPK_3025 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=YPK_3025 PE=3... gi\|229694512, gi... - gi\|229838146\|ref\|ZP_04458305.1\| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2], gi...	141.0	[0..1]	[87..1]
Y1293_PHOLL, YC9... - (Q7N765) Hypothetical UPF0250 protein plu1293, UPF0250 protein plu1293 OS=Photorhabdus luminescens s... Y1293_PHOLL - UPF0250 protein plu1293 OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 ...	141.0	[0..1]	[87..1]
gi\|62179235, gi\|... - gi\|62179235\|ref\|YP_215652.1\| hypothetical protein SC0665 [Salmonella enterica subsp. enterica serova...	140.0	[0..1]	[86..12]
gi\|77962167 - gi\|77962167\|ref\|ZP_00825991.1\| COG2921: Uncharacterized conserved protein [Yersinia mollaretii ATCC ...	140.0	[0..1]	[87..1]
gi\|194437456, gi... - gi\|83586935\|ref\|ZP_00925565.1\| COG2921: Uncharacterized conserved protein [Escherichia coli 101-1], ... YBED_SHIB3 - UPF0250 protein YbeD OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=ybeD PE=3 SV=1 gi\|83570462, gi\|... - gi\|83570462\|ref\|ZP_00921907.1\| COG2921: Uncharacterized conserved protein [Shigella dysenteriae 1012... YBED_ECOL6 - UPF0250 protein ybeD OS=Escherichia coli O6 GN=ybeD PE=3 SV=1 YBED_ECOK1 - UPF0250 protein YbeD OS=Escherichia coli O1:K1 / APEC GN=ybeD PE=3 SV=1 gi\|124499333, gi... - gi\|124530170\|ref\|ZP_01700919.1\| protein of unknown function DUF493 [Escherichia coli B], gi\|12449933... gi\|24112069, gi\|... - gi\|24112069\|ref\|NP_706579.1\| hypothetical protein SF0650 [Shigella flexneri 2a str. 301], gi\|2405089... YBED_SHIFL - UPF0250 protein YbeD OS=Shigella flexneri GN=ybeD PE=3 SV=1 gi\|30062180, gi\|... - gi\|30062180\|ref\|NP_836351.1\| hypothetical protein S0672 [Shigella flexneri 2a str. 2457T], gi\|300404... YBED_ECOL6 - UPF0250 protein YbeD OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ybeD PE=3 SV=... EG11592 - UPF0250 family protein / Required for swarming and phage lambda growth; UPF0250 family, function unk... YBED_ECO57 - UPF0250 protein YbeD OS=Escherichia coli O157:H7 GN=ybeD PE=3 SV=1 YBED_ECOL5 - UPF0250 protein YbeD OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=ybeD PE=3 SV=1 gi\|15800345, gi\|... - gi\|15800345\|ref\|NP_286357.1\| hypothetical protein Z0776 [Escherichia coli O157:H7 EDL933], gi\|125135... YBED_SHIF8 - UPF0250 protein YbeD OS=Shigella flexneri serotype 5b (strain 8401) GN=ybeD PE=3 SV=1 YBED_ECOLC - UPF0250 protein YbeD OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=ybeD PE=3 SV=1 gi\|146621, gi\|89... - gi\|89107500\|ref\|AP_001280.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|406... YBED_ECOUT - UPF0250 protein YbeD OS=Escherichia coli (strain UTI89 / UPEC) GN=ybeD PE=3 SV=1 gi\|13360127, gi\|... - gi\|15829923\|ref\|NP_308696.1\| hypothetical protein ECs0669 [Escherichia coli O157:H7 str. Sakai], gi\|... sp\|B7UKS1\|YBED_ECO27 - UPF0250 protein ybeD OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=ybeD PE=3 SV=1 gi\|227838476, gi... - gi\|227884390\|ref\|ZP_04002195.1\| Ybed protein [Escherichia coli 83972], gi\|227838476\|gb\|EEJ48942.1\| Y... gi\|237707396, gi... - gi\|237707396\|ref\|ZP_04537877.1\| ybeD [Escherichia sp. 3_2_53FAA], gi\|226898606\|gb\|EEH84865.1\| ybeD [... YBED_ECOBW - UPF0250 protein YbeD OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=ybeD PE=3 SV=1 gi\|251784134, gi... - gi\|251784134\|ref\|YP_002998438.1\| hypothetical protein B21_00589 [Escherichia coli BL21], gi\|24237640... gi\|254287501, gi... - gi\|254287501\|ref\|YP_003053249.1\| hypothetical protein ECD_00600 [Escherichia coli BL21(DE3)], gi\|253... gi\|254160713, gi... - gi\|254160713\|ref\|YP_003043821.1\| hypothetical protein ECB_00600 [Escherichia coli B str. REL606], gi... gi\|254791797, gi... - gi\|254791797\|ref\|YP_003076634.1\| hypothetical protein ECSP_0684 [Escherichia coli O157:H7 str. TW143... YBED_ECOLI - UPF0250 protein ybeD - Escherichia coli EG11592 - UPF0250 family protein / Required for swarming and phage lambda growth; UPF0250 family, function unk... YBED_ECOSM - UPF0250 protein YbeD OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=ybeD PE=3 SV=1 gi\|169888146, gi... - gi\|170080311\|ref\|YP_001729631.1\| hypothetical protein ECDH10B_0700 [Escherichia coli str. K-12 subst... gi\|195940743 - gi\|195940743\|ref\|ZP_03086125.1\| hypothetical protein EscherichcoliO157_30842 [Escherichia coli O157:... gi\|170767864, gi... - gi\|170767864\|ref\|ZP_02902317.1\| protein YbeD [Escherichia albertii TW07627], gi\|170123352\|gb\|EDS9228... gi\|208814899, gi... - gi\|208814899\|ref\|ZP_03256078.1\| protein YbeD [Escherichia coli O157:H7 str. EC4045], gi\|208731547\|gb... gi\|208806713, gi... - gi\|208806713\|ref\|ZP_03249050.1\| protein YbeD [Escherichia coli O157:H7 str. EC4206], gi\|208726514\|gb... YBED_ECO5E - UPF0250 protein YbeD OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=ybeD PE=3 SV=1 gi\|208822868, gi... - gi\|208822868\|ref\|ZP_03263186.1\| protein YbeD [Escherichia coli O157:H7 str. EC4042], gi\|208737061\|gb... gi\|168754734, gi... - gi\|189358119\|gb\|EDU76538.1\| protein YbeD [Escherichia coli O157:H7 str. EC4401], gi\|168754734\|ref\|ZP... gi\|187766837, gi... - gi\|187766837\|gb\|EDU30681.1\| protein YbeD [Escherichia coli O157:H7 str. EC4196], gi\|168778084\|ref\|ZP... gi\|189360836, gi... - gi\|189360836\|gb\|EDU79255.1\| protein YbeD [Escherichia coli O157:H7 str. EC4486], gi\|168770235\|ref\|ZP... gi\|189373717, gi... - gi\|189373717\|gb\|EDU92133.1\| protein YbeD [Escherichia coli O157:H7 str. EC869], gi\|168786480\|ref\|ZP_... gi\|189003004, gi... - gi\|189003004\|gb\|EDU71990.1\| protein YbeD [Escherichia coli O157:H7 str. EC4076], gi\|168779123\|ref\|ZP... YBED_SHIBS - UPF0250 protein YbeD OS=Shigella boydii serotype 4 (strain Sb227) GN=ybeD PE=3 SV=1 YBED_ECOLU - UPF0250 protein YbeD OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=ybeD PE=3 SV=1 YBED_ECO7I - UPF0250 protein YbeD OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=ybeD PE=3 SV=1 YBED_SHISS - UPF0250 protein YbeD OS=Shigella sonnei (strain Ss046) GN=ybeD PE=3 SV=1 YBED_SHIDS - UPF0250 protein YbeD OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=ybeD PE=3 SV=1 gi\|75210742, gi\|... - gi\|75210742\|ref\|ZP_00710874.1\| COG2921: Uncharacterized conserved protein [Escherichia coli B171], g... YBED_ECO27 - UPF0250 protein YbeD OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=ybeD PE=3 SV=1 gi\|75229485, gi\|... - gi\|75229485\|ref\|ZP_00716032.1\| COG2921: Uncharacterized conserved protein [Escherichia coli B7A], gi... YBED_ECOSE - UPF0250 protein YbeD OS=Escherichia coli (strain SE11) GN=ybeD PE=3 SV=1 YBED_ECO24 - UPF0250 protein YbeD OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=ybeD PE=3 SV=1 YBED_ESCF3 - UPF0250 protein YbeD OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=ybeD... YBED_ECOHS - UPF0250 protein YbeD OS=Escherichia coli O9:H4 (strain HS) GN=ybeD PE=3 SV=1 gi\|217322117, gi... - gi\|217325896\|ref\|ZP_03441980.1\| protein YbeD [Escherichia coli O157:H7 str. TW14588], gi\|217322117\|g... gi\|75258633, gi\|... - gi\|75258633\|ref\|ZP_00730040.1\| COG2921: Uncharacterized conserved protein [Escherichia coli E22], gi... YBED_ECO45 - UPF0250 protein YbeD OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=ybeD PE=3 SV=1 gi\|188496125, gi... - gi\|75514724\|ref\|ZP_00736979.1\| COG2921: Uncharacterized conserved protein [Escherichia coli 53638], ... YBED_ECO8A - UPF0250 protein YbeD OS=Escherichia coli O8 (strain IAI1) GN=ybeD PE=3 SV=1 gi\|75236612, gi\|... - gi\|75236612\|ref\|ZP_00720700.1\| COG2921: Uncharacterized conserved protein [Escherichia coli E110019]... YBED_ECO55 - UPF0250 protein YbeD OS=Escherichia coli (strain 55989 / EAEC) GN=ybeD PE=3 SV=1 gi\|190907421, gi... - gi\|75240785\|ref\|ZP_00724692.1\| COG2921: Uncharacterized conserved protein [Escherichia coli F11], gi... YBED_ECO81 - UPF0250 protein YbeD OS=Escherichia coli O81 (strain ED1a) GN=ybeD PE=3 SV=1	140.0	[0..1]	[87..1]
Y718_VIBPA - UPF0250 protein VP0718 OS=Vibrio parahaemolyticus GN=VP0718 PE=3 SV=1 Y718_VIBPA - UPF0250 protein VP0718 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=VP0718 PE=...	140.0	[0..2]	[87..7]
gi\|77957579 - gi\|77957579\|ref\|ZP_00821631.1\| COG2921: Uncharacterized conserved protein [Yersinia bercovieri ATCC ...	140.0	[0..1]	[87..1]

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Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTKLNELLE FPTPFTYKVM GQALPELVDQ VVEVVQRHAP GDYSPTVKPS SKGNYHSVSI  60
   61 TINATHIEQV ETLYEELGNI DIVRMVL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.69897
Match:	1rwuA
Description:	Solution structure of conserved protein YbeD from E. coli
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits