YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|182888019
Organism:	synthetic construct
Length:	134 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|182888019.

Description	E-value	Query Range	Subject Range
gi\|15928669, gi\|... - gi\|31542416\|ref\|NP_031782.2\| complexin 1 [Mus musculus], gi\|15928669\|gb\|AAH14803.1\| Complexin 1 [Mus...	160.0	[0..1]	[134..1]
CPLX2_NARJA - Complexin-2 OS=Narke japonica PE=1 SV=1	159.0	[0..1]	[134..1]
gi\|55926107, gi\|... - gi\|55926107\|ref\|NP_001007496.1\| cplx2 protein [Xenopus (Silurana) tropicalis], gi\|51258162\|gb\|AAH799...	159.0	[0..1]	[134..1]
gi\|37590711, gi\|... - gi\|37590711\|gb\|AAH59299.1\| MGC68923 protein [Xenopus laevis], gi\|162139014\|ref\|NP_001080000.1\| hypot...	156.0	[0..1]	[134..1]
gi\|1363278 - gi\|1363278\|pir\|\|C57233 complexin II - rat gi\|1362772 - gi\|1362772\|pir\|\|E57233 complexin II - human	155.0	[0..1]	[134..1]
CPLX1_RAT - Complexin-1 OS=Rattus norvegicus GN=Cplx1 PE=1 SV=1 CPLX1_MOUSE - Complexin-1 OS=Mus musculus GN=Cplx1 PE=1 SV=1	155.0	[0..1]	[134..1]
gi\|50761882 - gi\|50761882\|ref\|XP_424869.1\| PREDICTED: similar to synaphin 2 [Gallus gallus]	154.0	[0..1]	[134..1]
gi\|30584359, gi\|... - gi\|61372290\|gb\|AAX43818.1\| complexin 1 [synthetic construct], gi\|61372285\|gb\|AAX43817.1\| complexin 1...	152.0	[0..1]	[134..1]
gi\|189527775, gi... - gi\|68373364\|ref\|XP_683429.1\| PREDICTED: similar to complexin 2 isoform 1 [Danio rerio], gi\|189527775...	152.0	[0..1]	[134..1]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFVMKQALG GATKDMGKML GGEEEKDPDA QKKEEERQEA LRQQEEERKA KHARMEAERE  60
   61 KVRQQIRDKY GLKKKEEKEA EEKAALEQPC EGSLTRPKKA IPAGCGDEEE EEEESILDTV 120
  121 LKYLPGPLQD MFKK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	74.958607
Match:	PF05835.3
Description:	No description for PF05835.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits