YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|204319899, gi...
Organism:	Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433
Length:	90 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|204319899, gi....

Description	E-value	Query Range	Subject Range
gi\|110643474, gi... - gi\|110643474\|ref\|YP_671204.1\| hypothetical protein ECP_3323 [Escherichia coli 536], gi\|110345066\|gb\|... gi\|189358388, gi... - gi\|189358388\|gb\|EDU76807.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|168752148, gi... - gi\|188013940\|gb\|EDU52062.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... YHCO_ECOL6 - Uncharacterized protein YhcO OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yhcO ... gi\|168769095, gi... - gi\|189361732\|gb\|EDU80151.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|168763776, gi... - gi\|189366131\|gb\|EDU84547.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|12517860, gi\|... - gi\|15803773\|ref\|NP_289807.1\| hypothetical protein Z4598 [Escherichia coli O157:H7 EDL933], gi\|125178... EG12821 - putative barnase inhibitor / Predicted barnase inhibitor gi\|208739974, gi... - gi\|208819851\|ref\|ZP_03260171.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|208733808, gi... - gi\|208812531\|ref\|ZP_03253860.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|209913968, gi... - gi\|209920709\|ref\|YP_002294793.1\| hypothetical protein ECSE_3518 [Escherichia coli SE11], gi\|20991396... gi\|117625523, gi... - gi\|117625523\|ref\|YP_858846.1\| hypothetical protein APECO1_3205 [Escherichia coli APEC O1], gi\|115514... gi\|209396510, gi... - gi\|209396510\|ref\|YP_002272702.1\| hypothetical protein ECH74115_4556 [Escherichia coli O157:H7 str. E... gi\|124500536, gi... - gi\|124528513\|ref\|ZP_01699802.1\| conserved hypothetical protein [Escherichia coli B], gi\|124500536\|gb... gi\|217319807, gi... - gi\|217327440\|ref\|ZP_03443523.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|215488547, gi... - gi\|215488547\|ref\|YP_002330978.1\| predicted barnase inhibitor [Escherichia coli O127:H6 str. E2348/69... gi\|218367070, gi... - gi\|218560301\|ref\|YP_002393214.1\| putative barnase inhibitor [Escherichia coli S88], gi\|218367070\|emb... gi\|218555803, gi... - gi\|218555803\|ref\|YP_002388716.1\| putative barnase inhibitor [Escherichia coli IAI1], gi\|218362571\|em... gi\|168781383, gi... - gi\|189001110\|gb\|EDU70096.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|187767172, gi... - gi\|187767172\|gb\|EDU31016.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|168800952, gi... - gi\|189376824\|gb\|EDU95240.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|168786125, gi... - gi\|189373819\|gb\|EDU92235.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|170082771, gi... - gi\|170082771\|ref\|YP_001732091.1\| barnase inhibitor [Escherichia coli str. K-12 substr. DH10B], gi\|16... gi\|170018517, gi... - gi\|170018517\|ref\|YP_001723471.1\| hypothetical protein EcolC_0467 [Escherichia coli ATCC 8739], gi\|16... gi\|208726652, gi... - gi\|208806851\|ref\|ZP_03249188.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|195939437 - gi\|195939437\|ref\|ZP_03084819.1\| barnase inhibitor [Escherichia coli O157:H7 str. EC4024] gi\|89110001, gi\|... - gi\|89110001\|ref\|AP_003781.1\| predicted barnase inhibitor [Escherichia coli str. K-12 substr. W3110],... gi\|75234853, gi\|... - gi\|75234853\|ref\|ZP_00719144.1\| COG2732: Barstar, RNAse (barnase) inhibitor [Escherichia coli E110019... gi\|190905897, gi... - gi\|75237906\|ref\|ZP_00721917.1\| COG2732: Barstar, RNAse (barnase) inhibitor [Escherichia coli F11], g... gi\|194429140, gi... - gi\|75209676\|ref\|ZP_00709888.1\| COG2732: Barstar, RNAse (barnase) inhibitor [Escherichia coli B171], ... gi\|190901784, gi... - gi\|75228635\|ref\|ZP_00715260.1\| COG2732: Barstar, RNAse (barnase) inhibitor [Escherichia coli B7A], g... gi\|73857247, gi\|... - gi\|74313770\|ref\|YP_312189.1\| hypothetical protein SSON_3381 [Shigella sonnei Ss046], gi\|73857247\|gb\|... gi\|81246943, gi\|... - gi\|82545532\|ref\|YP_409479.1\| hypothetical protein SBO_3150 [Shigella boydii Sb227], gi\|81246943\|gb\|A... gi\|192927004, gi... - gi\|75256609\|ref\|ZP_00728239.1\| COG2732: Barstar, RNAse (barnase) inhibitor [Escherichia coli E22], g... gi\|75511865, gi\|... - gi\|75511865\|ref\|ZP_00734477.1\| COG2732: Barstar, RNAse (barnase) inhibitor [Escherichia coli 53638],... gi\|157156620, gi... - gi\|75188039\|ref\|ZP_00701306.1\| COG2732: Barstar, RNAse (barnase) inhibitor [Escherichia coli E24377A... gi\|75197182, gi\|... - gi\|75197182\|ref\|ZP_00707252.1\| COG2732: Barstar, RNAse (barnase) inhibitor [Escherichia coli HS], gi... gi\|187427477, gi... - gi\|75176075\|ref\|ZP_00696243.1\| COG2732: Barstar, RNAse (barnase) inhibitor [Shigella boydii BS512], ... gi\|91212659, gi\|... - gi\|91212659\|ref\|YP_542645.1\| hypothetical protein UTI89_C3670 [Escherichia coli UTI89], gi\|91074233\|... gi\|13363585, gi\|... - gi\|15833366\|ref\|NP_312139.1\| hypothetical protein ECs4112 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|227887954, gi... - gi\|227887954\|ref\|ZP_04005759.1\| barstar family protein ribonuclease (barnase) inhibitor [Escherichia... gi\|237706014, gi... - gi\|237706014\|ref\|ZP_04536495.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|238902340, gi... - gi\|238902340\|ref\|YP_002928136.1\| putative barnase inhibitor [Escherichia coli BW2952], gi\|238862176\|... gi\|226840023, gi... - gi\|254038399\|ref\|ZP_04872457.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22684002... gi\|254594582, gi... - gi\|254795182\|ref\|YP_003080019.1\| predicted barnase inhibitor [Escherichia coli O157:H7 str. TW14359]... EG12821 - putative barnase inhibitor / Predicted barnase inhibitor YHCO_ECOLI - Hypothetical protein yhcO - Escherichia coli YHCO_ECOL6 - Uncharacterized protein yhcO OS=Escherichia coli O6 GN=yhcO PE=3 SV=1 YHCO_ECO57 - Uncharacterized protein YhcO OS=Escherichia coli O157:H7 GN=yhcO PE=1 SV=1 gi\|218371990, gi... - gi\|218702004\|ref\|YP_002409633.1\| putative barnase inhibitor [Escherichia coli IAI39], gi\|218371990\|e... gi\|218696938, gi... - gi\|218696938\|ref\|YP_002404605.1\| putative barnase inhibitor [Escherichia coli 55989], gi\|218353670\|e...	7.0E-33	[1..90]	[1..90]
gi\|83585390, gi\|... - gi\|83585390\|ref\|ZP_00924036.1\| COG2732: Barstar, RNAse (barnase) inhibitor [Escherichia coli 101-1],... gi\|81242695, gi\|... - gi\|82778547\|ref\|YP_404896.1\| hypothetical protein SDY_3415 [Shigella dysenteriae Sd197], gi\|81242695... gi\|218706853, gi... - gi\|218706853\|ref\|YP_002414372.1\| putative barnase inhibitor [Escherichia coli UMN026], gi\|218433950\|... gi\|170518143, gi... - gi\|170680425\|ref\|YP_001745511.1\| hypothetical protein EcSMS35_3535 [Escherichia coli SMS-3-5], gi\|17... gi\|253771931, gi... - gi\|254289926\|ref\|YP_003055674.1\| predicted barnase inhibitor [Escherichia coli BL21(DE3)], gi\|253979... gi\|251786503, gi... - gi\|251786503\|ref\|YP_003000807.1\| hypothetical protein B21_03050 [Escherichia coli BL21], gi\|24237877... gi\|254163176, gi... - gi\|254163176\|ref\|YP_003046284.1\| predicted barnase inhibitor [Escherichia coli B str. REL606], gi\|25...	2.0E-32	[1..90]	[1..90]
gi\|110807101, gi... - gi\|110807101\|ref\|YP_690621.1\| hypothetical protein SFV_3266 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|24114526, gi\|... - gi\|24114526\|ref\|NP_709036.1\| hypothetical protein SF3279 [Shigella flexneri 2a str. 301], gi\|2405371... gi\|30064571, gi\|... - gi\|30064571\|ref\|NP_838742.1\| hypothetical protein S3494 [Shigella flexneri 2a str. 2457T], gi\|300428...	2.0E-32	[1..90]	[1..90]
gi\|85544468, gi\|... - gi\|85544468\|pdb\|2CX6\|B Chain B, Crystal Structure Of Ribonuclease Inhibitor Barstar, gi\|85544467\|pdb... gi\|85544467\|pdb\|... - Chain A, Crystal Structure Of Ribonuclease Inhibitor Barstar, Chain B, Crystal Structure Of Ribonucl...	2.0E-31	[2..90]	[2..90]
gi\|167049916, gi... - gi\|167400548\|ref\|ZP_02306057.1\| barstar [Yersinia pestis biovar Antiqua str. UG05-0454], gi\|16704991... gi\|166206574, gi... - gi\|166211828\|ref\|ZP_02237863.1\| barstar [Yersinia pestis biovar Antiqua str. B42003004], gi\|16620657... gi\|167054261, gi... - gi\|167426734\|ref\|ZP_02318487.1\| barstar [Yersinia pestis biovar Mediaevalis str. K1973002], gi\|16705... gi\|167420498, gi... - gi\|167420498\|ref\|ZP_02312251.1\| barstar [Yersinia pestis biovar Orientalis str. MG05-1020], gi\|16696... gi\|170022739, gi... - gi\|170022739\|ref\|YP_001719244.1\| barstar (barnase inhibitor) [Yersinia pseudotuberculosis YPIII], gi... gi\|167466804 - gi\|167466804\|ref\|ZP_02331508.1\| barstar [Yersinia pestis FV-1] gi\|186897027, gi... - gi\|186897027\|ref\|YP_001874139.1\| barstar (barnase inhibitor) [Yersinia pseudotuberculosis PB1/+], gi... gi\|165989781, gi... - gi\|166011397\|ref\|ZP_02232295.1\| barstar [Yersinia pestis biovar Antiqua str. E1979001], gi\|165989781... gi\|165928292, gi... - gi\|165928292\|ref\|ZP_02224124.1\| barstar [Yersinia pestis biovar Orientalis str. F1991016], gi\|165919... gi\|25511239 - pir\|\|AB0449 probable ribonuclease inhibitor YPO3690 [imported] - Yersinia pestis (strain CO92) gi\|45438454, gi\|... - gi\|45443584\|ref\|NP_995123.1\| putative ribonuclease inhibitor [Yersinia pestis biovar Microtus str. 9... gi\|22124093, gi\|... - gi\|22124093\|ref\|NP_667516.1\| hypothetical protein y0173 [Yersinia pestis KIM], gi\|21956843\|gb\|AAM837... gi\|16123829, gi\|... - gi\|218930697\|ref\|YP_002348572.1\| putative ribonuclease inhibitor [Yersinia pestis CO92], gi\|16123829... gi\|51597834, gi\|... - gi\|51597834\|ref\|YP_072025.1\| putative ribonuclease inhibitor [Yersinia pseudotuberculosis IP 32953],... Q665H5\|Q665H5_YERPS - Putative ribonuclease inhibitor - Yersinia pseudotuberculosis gi\|229836842, gi... - gi\|229836842\|ref\|ZP_04457007.1\| putative ribonuclease inhibitor [Yersinia pestis Pestoides A], gi\|22... gi\|229695626, gi... - gi\|229839260\|ref\|ZP_04459419.1\| putative ribonuclease inhibitor [Yersinia pestis biovar Orientalis s... gi\|229899824, gi... - gi\|229899824\|ref\|ZP_04514965.1\| putative ribonuclease inhibitor [Yersinia pestis biovar Orientalis s... gi\|153997375, gi... - gi\|153997375\|ref\|ZP_02022475.1\| putative ribonuclease inhibitor [Yersinia pestis CA88-4125], gi\|1492... gi\|145209309, gi... - gi\|145597613\|ref\|YP_001161689.1\| ribonuclease inhibitor [Yersinia pestis Pestoides F], gi\|145209309\|... gi\|165937453, gi... - gi\|89105408\|ref\|ZP_01177928.1\| COG2732: Barstar, RNAse (barnase) inhibitor [Yersinia pestis biovar O... gi\|108781607, gi... - gi\|108809694\|ref\|YP_653610.1\| putative ribonuclease inhibitor [Yersinia pestis Antiqua], gi\|10878160... gi\|77633544, gi\|... - gi\|77633544\|ref\|ZP_00795670.1\| COG2732: Barstar, RNAse (barnase) inhibitor [Yersinia pestis Angola],... gi\|77630543, gi\|... - gi\|77630543\|ref\|ZP_00793129.1\| COG2732: Barstar, RNAse (barnase) inhibitor [Yersinia pseudotuberculo... gi\|229904136, gi... - gi\|229904136\|ref\|ZP_04519247.1\| putative ribonuclease inhibitor [Yersinia pestis Nepal516], gi\|22967...	2.0E-24	[1..88]	[1..87]
gi\|77973443 - gi\|77973443\|ref\|ZP_00828991.1\| COG2732: Barstar, RNAse (barnase) inhibitor [Yersinia frederiksenii A...	4.0E-22	[1..88]	[1..87]
gi\|238797946, gi... - gi\|77959994\|ref\|ZP_00823899.1\| COG2732: Barstar, RNAse (barnase) inhibitor [Yersinia mollaretii ATCC...	1.0E-21	[1..88]	[1..87]
gi\|77958837, gi\|... - gi\|77958837\|ref\|ZP_00822864.1\| COG2732: Barstar, RNAse (barnase) inhibitor [Yersinia bercovieri ATCC...	2.0E-21	[1..88]	[1..87]
gi\|238726984, gi... - gi\|77978736\|ref\|ZP_00834161.1\| COG2732: Barstar, RNAse (barnase) inhibitor [Yersinia intermedia ATCC...	4.0E-21	[1..88]	[1..87]
gi\|37527909, gi\|... - gi\|37527909\|ref\|NP_931254.1\| hypothetical protein plu4062 [Photorhabdus luminescens subsp. laumondii...	7.0E-20	[1..68]	[1..67]

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Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVYTFDFND IKNQSDFYRE FTQTFGLASE KVSDLDTLWD AVMSDILPLP LEIEFVHLPD  60
   61 KLRRRYGALI LLFDEAEEEL EGRLRFNVRH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.39794
Match:	2cx6A
Description:	Crystal structure of ribonuclease inhibitor Barstar
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits