YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|168235051, gi...
Organism:	Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480
Length:	289 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|168235051, gi....

Description	E-value	Query Range	Subject Range
gi\|89110654, gi\|... - gi\|89110654\|ref\|AP_004434.1\| predicted phosphoribulokinase [Escherichia coli str. K-12 substr. W3110... gi\|74313862, gi\|... - gi\|74313862\|ref\|YP_312281.1\| phosphoribulokinase [Shigella sonnei Ss046], gi\|73857339\|gb\|AAZ90046.1\|... gi\|82545704, gi\|... - gi\|82545704\|ref\|YP_409651.1\| phosphoribulokinase [Shigella boydii Sb227], gi\|81247115\|gb\|ABB67823.1\|... gi\|75197288, gi\|... - gi\|75197288\|ref\|ZP_00707358.1\| COG3954: Phosphoribulokinase [Escherichia coli HS], gi\|157162832\|ref\|... gi\|75211723, gi\|... - gi\|75211723\|ref\|ZP_00711787.1\| COG3954: Phosphoribulokinase [Escherichia coli B171], gi\|194427086\|re... gi\|110643595, gi... - gi\|110643595\|ref\|YP_671325.1\| phosphoribulokinase [Escherichia coli 536], gi\|110345187\|gb\|ABG71424.1... gi\|194439500, gi... - gi\|83585133\|ref\|ZP_00923785.1\| COG3954: Phosphoribulokinase [Escherichia coli 101-1], gi\|194439500\|r... gi\|110807189, gi... - gi\|110807189\|ref\|YP_690709.1\| phosphoribulokinase [Shigella flexneri 5 str. 8401], gi\|110616737\|gb\|A... gi\|75188131, gi\|... - gi\|75188131\|ref\|ZP_00701398.1\| COG3954: Phosphoribulokinase [Escherichia coli E24377A], gi\|157158464... gi\|193061788, gi... - gi\|75260354\|ref\|ZP_00731622.1\| COG3954: Phosphoribulokinase [Escherichia coli E22], gi\|193061788\|ref... gi\|188495897, gi... - gi\|75516175\|ref\|ZP_00738293.1\| COG3954: Phosphoribulokinase [Escherichia coli 53638], gi\|188495897\|r... gi\|75228397, gi\|... - gi\|75228397\|ref\|ZP_00715043.1\| COG3954: Phosphoribulokinase [Escherichia coli B7A], gi\|191168396\|ref... gi\|191171551, gi... - gi\|75241548\|ref\|ZP_00725393.1\| COG3954: Phosphoribulokinase [Escherichia coli F11], gi\|191171551\|ref... gi\|253975184, gi... - gi\|254163283\|ref\|YP_003046391.1\| predicted phosphoribulokinase [Escherichia coli B str. REL606], gi\|... gi\|254038518, gi... - gi\|254038518\|ref\|ZP_04872574.1\| phosphoribulokinase/uridine kinase [Escherichia sp. 1_1_43], gi\|2268... gi\|253979340, gi... - gi\|254290033\|ref\|YP_003055781.1\| predicted phosphoribulokinase [Escherichia coli BL21(DE3)], gi\|2539... gi\|242378882, gi... - gi\|251786609\|ref\|YP_003000913.1\| hypothetical protein B21_03158 [Escherichia coli BL21], gi\|24237888... gi\|238862828, gi... - gi\|238902447\|ref\|YP_002928243.1\| putative phosphoribulokinase [Escherichia coli BW2952], gi\|23886282... gi\|170018408, gi... - gi\|170018408\|ref\|YP_001723362.1\| phosphoribulokinase [Escherichia coli ATCC 8739], gi\|169753336\|gb\|A... gi\|169890708, gi... - gi\|170082873\|ref\|YP_001732193.1\| phosphoribulokinase [Escherichia coli str. K-12 substr. DH10B], gi\|... gi\|170520750, gi... - gi\|170683032\|ref\|YP_001745604.1\| phosphoribulokinase/uridine kinase family protein [Escherichia coli... gi\|218353767, gi... - gi\|218697035\|ref\|YP_002404702.1\| phosphoribulokinase [Escherichia coli 55989], gi\|218353767\|emb\|CAV0... KPPR_ECOLI - Probable phosphoribulokinase (EC 2.7.1.19) (Phosphopentokinase) (PRKase) (PRK) - Escherichia coli gi\|218372089, gi... - gi\|218702103\|ref\|YP_002409732.1\| phosphoribulokinase [Escherichia coli IAI39], gi\|218372089\|emb\|CAR1... gi\|218706950, gi... - gi\|218706950\|ref\|YP_002414469.1\| phosphoribulokinase [Escherichia coli UMN026], gi\|218434047\|emb\|CAR... EG12365 - putative phosphoribulokinase / Predicted phosphoribulokinase gi\|24114620, gi\|... - gi\|24114620\|ref\|NP_709130.1\| phosphoribulokinase [Shigella flexneri 2a str. 301], gi\|24053819\|gb\|AAN... gi\|30043621, gi\|... - gi\|30065359\|ref\|NP_839530.1\| phosphoribulokinase [Shigella flexneri 2a str. 2457T], gi\|30043621\|gb\|A... KPPR_SHIFL - Probable phosphoribulokinase OS=Shigella flexneri GN=prkB PE=3 SV=1 gi\|124528131, gi... - gi\|124528131\|ref\|ZP_01699464.1\| Phosphoribulokinase [Escherichia coli B], gi\|124500786\|gb\|EAY48255.1... EG12365 - putative phosphoribulokinase / Predicted phosphoribulokinase	9.0E-80	[1..289]	[1..289]
gi\|91074406, gi\|... - gi\|91212832\|ref\|YP_542818.1\| putative phosphoribulokinase [Escherichia coli UTI89], gi\|91074406\|gb\|A... gi\|218555900, gi... - gi\|218555900\|ref\|YP_002388813.1\| phosphoribulokinase [Escherichia coli IAI1], gi\|218362668\|emb\|CAR00... gi\|227883490, gi... - gi\|227883490\|ref\|ZP_04001295.1\| phosphoribulokinase [Escherichia coli 83972], gi\|227839369\|gb\|EEJ498... gi\|218560417, gi... - gi\|218560417\|ref\|YP_002393330.1\| phosphoribulokinase [Escherichia coli S88], gi\|218367186\|emb\|CAR049... gi\|237703087, gi... - gi\|237703087\|ref\|ZP_04533568.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|218429200, gi... - gi\|218691636\|ref\|YP_002399848.1\| phosphoribulokinase [Escherichia coli ED1a], gi\|218429200\|emb\|CAR10... gi\|115514755, gi... - gi\|117625631\|ref\|YP_858954.1\| putative phosphoribulokinase PrkB [Escherichia coli APEC O1], gi\|11551...	9.0E-80	[1..289]	[1..289]
gi\|90413577, gi\|... - gi\|90413577\|ref\|ZP_01221567.1\| Putative phosphoribulokinase [Photobacterium profundum 3TCK], gi\|9032...	2.0E-79	[1..288]	[1..288]
gi\|75236956, gi\|... - gi\|75236956\|ref\|ZP_00721012.1\| COG3954: Phosphoribulokinase [Escherichia coli E110019], gi\|193068823...	2.0E-79	[1..289]	[1..289]
gi\|54307516, gi\|... - gi\|54307516\|ref\|YP_128536.1\| putative phosphoribulokinase [Photobacterium profundum SS9], gi\|4691193...	2.0E-79	[1..288]	[1..288]
gi\|26249954, gi\|... - gi\|26249954\|ref\|NP_755994.1\| phosphoribulokinase [Escherichia coli CFT073], gi\|26110382\|gb\|AAN82568....	5.0E-79	[1..289]	[1..289]
gi\|15833460, gi\|... - gi\|15833460\|ref\|NP_312233.1\| putative phosphoribulokinase [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|217320357, gi... - gi\|217324136\|ref\|ZP_03440220.1\| phosphoribulokinase/uridine kinase family protein [Escherichia coli ... gi\|209157920, gi... - gi\|209396520\|ref\|YP_002272797.1\| phosphoribulokinase/uridine kinase family protein [Escherichia coli... gi\|25287541, gi\|... - pir\|\|F91154 probable phosphoribulokinase [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|208818294, gi... - gi\|208818294\|ref\|ZP_03258614.1\| phosphoribulokinase/uridine kinase family protein [Escherichia coli ... gi\|15833460, gi\|... - gi\|15833460\|ref\|NP_312233.1\| putative phosphoribulokinase [Escherichia coli O157:H7], gi\|13363679\|db... gi\|208735124, gi... - gi\|208813847\|ref\|ZP_03255176.1\| phosphoribulokinase/uridine kinase family protein [Escherichia coli ... gi\|189002603, gi... - gi\|189002603\|gb\|EDU71589.1\| phosphoribulokinase/uridine kinase family protein [Escherichia coli O157... gi\|168772748, gi... - gi\|187771554\|gb\|EDU35398.1\| phosphoribulokinase/uridine kinase family protein [Escherichia coli O157... gi\|189364818, gi... - gi\|189364818\|gb\|EDU83237.1\| phosphoribulokinase/uridine kinase family protein [Escherichia coli O157... gi\|168759384, gi... - gi\|189369802\|gb\|EDU88218.1\| phosphoribulokinase/uridine kinase family protein [Escherichia coli O157... gi\|208729223, gi... - gi\|208809422\|ref\|ZP_03251759.1\| phosphoribulokinase/uridine kinase family protein [Escherichia coli ... gi\|195934852 - gi\|195934852\|ref\|ZP_03080234.1\| putative phosphoribulokinase [Escherichia coli O157:H7 str. EC4024] gi\|168797131, gi... - gi\|189380106\|gb\|EDU98522.1\| phosphoribulokinase/uridine kinase family protein [Escherichia coli O157... gi\|168785164, gi... - gi\|189374387\|gb\|EDU92803.1\| phosphoribulokinase/uridine kinase family protein [Escherichia coli O157... gi\|189359335, gi... - gi\|189359335\|gb\|EDU77754.1\| phosphoribulokinase/uridine kinase family protein [Escherichia coli O157... gi\|188014197, gi... - gi\|188014197\|gb\|EDU52319.1\| phosphoribulokinase/uridine kinase family protein [Escherichia coli O157... gi\|254795279, gi... - gi\|254795279\|ref\|YP_003080116.1\| predicted phosphoribulokinase [Escherichia coli O157:H7 str. TW1435...	7.0E-79	[1..289]	[1..289]
gi\|75180031, gi\|... - gi\|75180031\|ref\|ZP_00700018.1\| COG3954: Phosphoribulokinase [Shigella boydii BS512], gi\|187733558\|re...	7.0E-79	[1..289]	[1..289]
gi\|25287543 - pir\|\|C86000 probable phosphoribulokinase prkB [imported] - Escherichia coli (strain O157:H7, substra... gi\|15803869, gi\|... - gi\|15803869\|ref\|NP_289903.1\| phosphoribulokinase [Escherichia coli O157:H7 EDL933], gi\|12517977\|gb\|A...	8.0E-79	[1..289]	[1..289]
gi\|7861553 - gi\|7861553\|dbj\|BAA95690.1\| phosphoribulokinase [Hydrogenophilus thermoluteolus]	2.0E-78	[1..287]	[1..288]

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Predicted Domain #1

Region A:
Residues: [1-289]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAKHPVIAV TGSSGAGTTT TSLAFRKIFA QLNLHAAEVE GDSFHRYTRP EMDMAIRKAR  60
   61 DAGRHISYFG PEANDFSLLE HTFIEYGQTG KGQSRKYLHT YDEAVPWNQV PGTFTPWQPL 120
  121 PEPTDVLFYE GLHGGVVTPQ HDVARHVDLL VGVVPIVNLE WIQKLIRDTS ERGHSREAVM 180
  181 DSVVRSMDDY INYITPQFSR THINFQRVPT VDTSNPFAAK GIPSLDESFV VIHFRNLEGI 240
  241 DFPWLLAMLQ GSFISHINTL VVPGGKMGLA MELIMLPLVQ RLMEGKKIE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	74.0
Match:	1a7jA
Description:	PHOSPHORIBULOKINASE FROM RHODOBACTER SPHEROIDES
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.37148167194523	bayes_pls_golite062009
hydrolase activity	0.310795123901245	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: