YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213025611
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. 404ty
Length:	219 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213025611.

Description	E-value	Query Range	Subject Range
gi\|170019279, gi... - gi\|170019279\|ref\|YP_001724233.1\| microcompartments protein [Escherichia coli ATCC 8739], gi\|16975420... gi\|187730457, gi... - gi\|187730457\|ref\|YP_001881237.1\| putative ethanolamine utilization protein EutL [Shigella boydii CDC... gi\|194432186, gi... - gi\|194432186\|ref\|ZP_03064475.1\| putative ethanolamine utilization protein EutL [Shigella dysenteriae... gi\|218361739, gi... - gi\|218554971\|ref\|YP_002387884.1\| putative carboxysome-related structural protein with putative role ... gi\|218696074, gi... - gi\|218696074\|ref\|YP_002403741.1\| putative carboxysome-related structural protein with putative role ... gi\|218370891, gi... - gi\|218700905\|ref\|YP_002408534.1\| putative carboxysome-related structural protein with putative role ... gi\|75233865, gi\|... - gi\|75237809\|ref\|ZP_00721825.1\| COG4816: Ethanolamine utilization protein [Escherichia coli E110019],... gi\|193064747, gi... - gi\|75257251\|ref\|ZP_00728775.1\| COG4816: Ethanolamine utilization protein [Escherichia coli E22], gi\|... gi\|194427339, gi... - gi\|75211409\|ref\|ZP_00711499.1\| COG4816: Ethanolamine utilization protein [Escherichia coli B171], gi... gi\|191167624, gi... - gi\|75229230\|ref\|ZP_00715798.1\| COG4816: Ethanolamine utilization protein [Escherichia coli B7A], gi\|... gi\|82544898, gi\|... - gi\|82544898\|ref\|YP_408845.1\| hypothetical protein SBO_2464 [Shigella boydii Sb227], gi\|81246309\|gb\|A... gi\|24052860, gi\|... - gi\|24113779\|ref\|NP_708289.1\| hypothetical protein SF2492 [Shigella flexneri 2a str. 301], gi\|2405286... gi\|30063830, gi\|... - gi\|30063830\|ref\|NP_838001.1\| hypothetical protein S2641 [Shigella flexneri 2a str. 2457T], gi\|300420... gi\|188493494, gi... - gi\|75515784\|ref\|ZP_00737919.1\| COG4816: Ethanolamine utilization protein [Escherichia coli 53638], g... gi\|74312974, gi\|... - gi\|74312974\|ref\|YP_311393.1\| ethanolamine utilization protein eutL [Shigella sonnei Ss046], gi\|73856... gi\|157158984, gi... - gi\|75187192\|ref\|ZP_00700459.1\| COG4816: Ethanolamine utilization protein [Escherichia coli E24377A],... gi\|75196453, gi\|... - gi\|75196453\|ref\|ZP_00706523.1\| COG4816: Ethanolamine utilization protein [Escherichia coli HS], gi\|1... gi\|110615928, gi... - gi\|110806380\|ref\|YP_689900.1\| hypothetical protein SFV_2491 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|124531853, gi... - gi\|124531853\|ref\|ZP_01701960.1\| microcompartments protein [Escherichia coli B], gi\|124498336\|gb\|EAY4...	3.0E-82	[1..219]	[1..219]
gi\|26109221, gi\|... - gi\|26248815\|ref\|NP_754855.1\| ethanolamine utilization protein eutL [Escherichia coli CFT073], gi\|261... gi\|110344212, gi... - gi\|110642620\|ref\|YP_670350.1\| ethanolamine utilization protein EutL [Escherichia coli 536], gi\|11034... gi\|227887484, gi... - gi\|227887484\|ref\|ZP_04005289.1\| ethanolamine utilization protein EutL [Escherichia coli 83972], gi\|2... gi\|237704962, gi... - gi\|237704962\|ref\|ZP_04535443.1\| ethanolamine utilization protein EutL [Escherichia sp. 3_2_53FAA], g... gi\|190906785, gi... - gi\|75240097\|ref\|ZP_00724056.1\| COG4816: Ethanolamine utilization protein [Escherichia coli F11], gi\|... gi\|218559384, gi... - gi\|218559384\|ref\|YP_002392297.1\| putative carboxysome-related structural protein with putative role ... gi\|91073351, gi\|... - gi\|91211777\|ref\|YP_541763.1\| ethanolamine utilization protein EutL [Escherichia coli UTI89], gi\|9107... gi\|117624644, gi... - gi\|117624644\|ref\|YP_853557.1\| ethanolamine utilization protein EutL [Escherichia coli APEC O1], gi\|1...	4.0E-82	[1..219]	[1..219]
gi\|242378047, gi... - gi\|251785774\|ref\|YP_003000078.1\| hypothetical protein B21_02301 [Escherichia coli BL21], gi\|24237804... gi\|253974323, gi... - gi\|254162422\|ref\|YP_003045530.1\| predicted carboxysome structural protein with predicted role in eth... gi\|253772662, gi... - gi\|254289183\|ref\|YP_003054931.1\| predicted carboxysome structural protein with predicted role in eth... gi\|194423352, gi... - gi\|83586904\|ref\|ZP_00925535.1\| COG4816: Ethanolamine utilization protein [Escherichia coli 101-1], g...	4.0E-82	[1..219]	[1..219]
gi\|208808812, gi... - gi\|208808812\|ref\|ZP_03251149.1\| putative ethanolamine utilization protein EutL [Escherichia coli O15... gi\|13362780, gi\|... - gi\|15832564\|ref\|NP_311337.1\| hypothetical protein ECs3310 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|208814163, gi... - gi\|208814163\|ref\|ZP_03255492.1\| putative ethanolamine utilization protein EutL [Escherichia coli O15... gi\|208821204, gi... - gi\|208821204\|ref\|ZP_03261524.1\| putative ethanolamine utilization protein EutL [Escherichia coli O15... gi\|209400275, gi... - gi\|209400275\|ref\|YP_002271916.1\| putative ethanolamine utilization protein EutL [Escherichia coli O1... gi\|168778404, gi... - gi\|189003638\|gb\|EDU72624.1\| putative ethanolamine utilization protein EutL [Escherichia coli O157:H7... gi\|189372341, gi... - gi\|189372341\|gb\|EDU90757.1\| putative ethanolamine utilization protein EutL [Escherichia coli O157:H7... gi\|209763980, gi... - pir\|\|A85887 hypothetical protein Z3704 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|168798809, gi... - gi\|189378544\|gb\|EDU96960.1\| putative ethanolamine utilization protein EutL [Escherichia coli O157:H7... gi\|195936590 - gi\|195936590\|ref\|ZP_03081972.1\| hypothetical protein EscherichcoliO157_09030 [Escherichia coli O157:... gi\|12516820, gi\|... - gi\|15802970\|ref\|NP_289000.1\| hypothetical protein Z3704 [Escherichia coli O157:H7 EDL933], gi\|125168... gi\|189356576, gi... - gi\|189356576\|gb\|EDU74995.1\| putative ethanolamine utilization protein EutL [Escherichia coli O157:H7... gi\|13362780, gi\|... - gi\|15832564\|ref\|NP_311337.1\| hypothetical protein ECs3310 [Escherichia coli O157:H7], gi\|13362780\|db... gi\|168761047, gi... - gi\|189368480\|gb\|EDU86896.1\| putative ethanolamine utilization protein EutL [Escherichia coli O157:H7... gi\|189362319, gi... - gi\|189362319\|gb\|EDU80738.1\| putative ethanolamine utilization protein EutL [Escherichia coli O157:H7... gi\|187770698, gi... - gi\|187770698\|gb\|EDU34542.1\| putative ethanolamine utilization protein EutL [Escherichia coli O157:H7... gi\|188017089, gi... - gi\|188017089\|gb\|EDU55211.1\| putative ethanolamine utilization protein EutL [Escherichia coli O157:H7... gi\|254593792, gi... - gi\|254794392\|ref\|YP_003079229.1\| predicted carboxysome structural protein with predicted role in eth... gi\|217319813, gi... - gi\|217327446\|ref\|ZP_03443529.1\| putative ethanolamine utilization protein EutL [Escherichia coli O15...	2.0E-81	[1..219]	[1..219]
gi\|56126917, gi\|... - gi\|56412660\|ref\|YP_149735.1\| ethanolamine utilization protein EutL [Salmonella enterica subsp. enter... gi\|197093071, gi... - gi\|197361595\|ref\|YP_002141231.1\| ethanolamine utilization protein EutL [Salmonella enterica subsp. e...	3.0E-81	[1..219]	[1..219]
gi\|81241981, gi\|... - gi\|82777833\|ref\|YP_404182.1\| hypothetical protein SDY_2637 [Shigella dysenteriae Sd197], gi\|81241981...	6.0E-81	[1..219]	[1..219]
EUTL_ECOLI - Ethanolamine utilization protein eutL - Escherichia coli gi\|169889883, gi... - gi\|170082048\|ref\|YP_001731368.1\| carboxysome structural protein with role in ethanolamine utilizatio... gi\|85675406, gi\|... - gi\|89109253\|ref\|AP_003033.1\| predicted carboxysome structural protein with predicted role in ethanol... gi\|238901602, gi... - gi\|238901602\|ref\|YP_002927398.1\| putative carboxysome structural protein with putative role in ethan... EG14171 - putative ethanol utilization carboxysome structural protein / Ethanolamine catabolic microcompartme... EG14171 - putative ethanol utilization carboxysome structural protein / Ethanolamine catabolic microcompartme...	7.0E-81	[1..219]	[1..219]
gi\|227553431, gi... - gi\|227553431\|ref\|ZP_03983480.1\| ethanolamine utilization protein EutL [Enterococcus faecalis HH22], ... gi\|227518815, gi... - gi\|227518815\|ref\|ZP_03948864.1\| ethanolamine utilization protein EutL [Enterococcus faecalis TX0104]... gi\|238856523, gi... - gi\|238856523\|ref\|ZP_04646789.1\| ethanolamine utilization protein EutL [Enterococcus faecalis TUSoD E... gi\|29376185, gi\|... - gi\|29376185\|ref\|NP_815339.1\| ethanolamine utilization protein EutL [Enterococcus faecalis V583], gi\|... gi\|229549950, gi... - gi\|229549950\|ref\|ZP_04438675.1\| ethanolamine utilization protein EutL [Enterococcus faecalis ATCC 29... gi\|229545760, gi... - gi\|229545760\|ref\|ZP_04434485.1\| ethanolamine utilization protein EutL [Enterococcus faecalis TX1332]...	2.0E-80	[5..216]	[4..215]
gi\|110801147, gi... - gi\|110801147\|ref\|YP_695342.1\| ethanolamine utilization protein EutL [Clostridium perfringens ATCC 13... gi\|170712714, gi... - gi\|170712714\|gb\|EDT24896.1\| ethanolamine utilization protein EutL [Clostridium perfringens B str. AT... gi\|168204926, gi... - gi\|170663382\|gb\|EDT16065.1\| ethanolamine utilization protein EutL [Clostridium perfringens E str. JG... gi\|182624995, gi... - gi\|182624995\|ref\|ZP_02952773.1\| ethanolamine utilization protein EutL [Clostridium perfringens D str... gi\|182381621, gi... - gi\|182381621\|gb\|EDT79100.1\| ethanolamine utilization protein EutL [Clostridium perfringens NCTC 8239... gi\|170715982, gi... - gi\|170715982\|gb\|EDT28164.1\| ethanolamine utilization protein EutL [Clostridium perfringens CPE str. ... gi\|18309882, gi\|... - gi\|18309882\|ref\|NP_561816.1\| ethanolamine utilization protein [Clostridium perfringens str. 13], gi\|...	7.0E-80	[5..216]	[4..215]
gi\|16800210 - gi\|16800210\|ref\|NP_470478.1\| hypothetical protein lin1141 [Listeria innocua Clip11262] gi\|16413600, gi\|... - pir\|\|AD1575 probable carboxysome structural protein (eutL) homolog lin1141 [imported] - Listeria inn...	2.0E-78	[5..217]	[4..216]

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Predicted Domain #1

Region A:
Residues: [1-141]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPALDLIRPS VTAMRVIASV NDGFARELKL PPHIRSLGLI TADSDDVTYI AADEATKQAM  60
   61 VEVVYGRSLY AGAAHGPSPT AGEVLIMLGG PNPAEVRAGL DAMVASIENG AAFQWANDAE 120
  121 NTAFLAHVVS RTGSYLSSTA G

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.74
Match:	2a1bA
Description:	Carboxysome shell protein ccmK2
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [142-219]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IALGDPMAYL VAPPLEATFG IDAAMKSADV QLVTYVPPPS ETNYSAAFLT GSQAACKAAC  60
   61 NAFTDAVLDI ARNPVQRA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.63
Match:	2ewhA
Description:	No description for 2ewhA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits