YRC Public Data Repository - Protein Structure Prediction

Protein:	NUOA_SALPK
Organism:	Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601
Length:	147 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NUOA_SALPK.

Description	E-value	Query Range	Subject Range
gi\|78695248, gi\|... - gi\|78695248\|ref\|ZP_00859760.1\| similar to NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Bradyr...	4.0E-37	[6..125]	[44..163]
gi\|24113660, gi\|... - gi\|24113660\|ref\|NP_708170.1\| NADH dehydrogenase subunit A [Shigella flexneri 2a str. 301], gi\|240527... EG12082 - NADH:ubiquinone oxidoreductase, membrane subunit A / NADH:ubiquinone oxidoreductase subunit A, compl... NUOA_ECOL6 - NADH-quinone oxidoreductase subunit A OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)... NUOA_SHIFL - NADH-quinone oxidoreductase subunit A OS=Shigella flexneri GN=nuoA PE=3 SV=1 NUOA_ECO57 - NADH-quinone oxidoreductase subunit A OS=Escherichia coli O157:H7 GN=nuoA PE=3 SV=1 gi\|30041969, gi\|... - gi\|30063714\|ref\|NP_837885.1\| NADH dehydrogenase subunit A [Shigella flexneri 2a str. 2457T], gi\|3004... EG12082 - NADH:ubiquinone oxidoreductase, membrane subunit A / NADH:ubiquinone oxidoreductase subunit A, compl... gi\|124501924, gi... - gi\|124526453\|ref\|ZP_01698406.1\| NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 [Escherichia c... NUOA_ECOK1 - NADH-quinone oxidoreductase subunit A OS=Escherichia coli O1:K1 / APEC GN=nuoA PE=3 SV=1 NUOA_ECOLI - NADH-quinone oxidoreductase chain A (EC 1.6.99.5) (NADH dehydrogenase I, chain A) (NDH-1, chain A) (... NUOA_SHIBS - NADH-quinone oxidoreductase subunit A OS=Shigella boydii serotype 4 (strain Sb227) GN=nuoA PE=3 SV=1 gi\|218365970, gi... - gi\|218559201\|ref\|YP_002392114.1\| NADH dehydrogenase subunit A [Escherichia coli S88], gi\|218365970\|e... gi\|218554844, gi... - gi\|218554844\|ref\|YP_002387757.1\| NADH dehydrogenase subunit A [Escherichia coli IAI1], gi\|218361612\|... gi\|218548263, gi... - gi\|218548263\|ref\|YP_002382054.1\| NADH dehydrogenase subunit A [Escherichia fergusonii ATCC 35469], g... gi\|217327503, gi... - gi\|217327503\|ref\|ZP_03443586.1\| NADH-quinone oxidoreductase, A subunit [Escherichia coli O157:H7 str... NUOA_SHISS - NADH-quinone oxidoreductase subunit A OS=Shigella sonnei (strain Ss046) GN=nuoA PE=3 SV=1 gi\|218705818, gi... - gi\|218705818\|ref\|YP_002413337.1\| NADH dehydrogenase subunit A [Escherichia coli UMN026], gi\|21843291... NUOA_ECOL6 - NADH-quinone oxidoreductase subunit A OS=Escherichia coli O6 GN=nuoA PE=3 SV=1 NUOA_SHIDS - NADH-quinone oxidoreductase subunit A OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=nuoA PE=3... gi\|218700762, gi... - gi\|218700762\|ref\|YP_002408391.1\| NADH dehydrogenase subunit A [Escherichia coli IAI39], gi\|218370748... gi\|218352619, gi... - gi\|218695887\|ref\|YP_002403554.1\| NADH dehydrogenase subunit A [Escherichia coli 55989], gi\|218352619... gi\|218428012, gi... - gi\|218690448\|ref\|YP_002398660.1\| NADH dehydrogenase subunit A [Escherichia coli ED1a], gi\|218428012\|... NUOA_ECOHS - NADH-quinone oxidoreductase subunit A OS=Escherichia coli O9:H4 (strain HS) GN=nuoA PE=3 SV=1 NUOA_ECO24 - NADH-quinone oxidoreductase subunit A OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=nuoA P... gi\|189002075, gi... - gi\|189002075\|gb\|EDU71061.1\| NADH-quinone oxidoreductase, A subunit [Escherichia coli O157:H7 str. EC... gi\|168772986, gi... - gi\|187771102\|gb\|EDU34946.1\| NADH-quinone oxidoreductase, A subunit [Escherichia coli O157:H7 str. EC... gi\|168767914, gi... - gi\|189362964\|gb\|EDU81383.1\| NADH-quinone oxidoreductase, A subunit [Escherichia coli O157:H7 str. EC... gi\|189368310, gi... - gi\|189368310\|gb\|EDU86726.1\| NADH-quinone oxidoreductase, A subunit [Escherichia coli O157:H7 str. EC... NUOA_ECODH - NADH-quinone oxidoreductase subunit A OS=Escherichia coli (strain K12 / DH10B) GN=nuoA PE=3 SV=1 NUOA_ECOLC - NADH-quinone oxidoreductase subunit A OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=... gi\|189378928, gi... - gi\|189378928\|gb\|EDU97344.1\| NADH-quinone oxidoreductase, A subunit [Escherichia coli O157:H7 str. EC... gi\|189372796, gi... - gi\|189372796\|gb\|EDU91212.1\| NADH-quinone oxidoreductase, A subunit [Escherichia coli O157:H7 str. EC... gi\|168755040, gi... - gi\|189357603\|gb\|EDU76022.1\| NADH-quinone oxidoreductase, A subunit [Escherichia coli O157:H7 str. EC... gi\|168748137, gi... - gi\|188017362\|gb\|EDU55484.1\| NADH-quinone oxidoreductase, A subunit [Escherichia coli O157:H7 str. EC... gi\|208734776, gi... - gi\|208813499\|ref\|ZP_03254828.1\| NADH-quinone oxidoreductase, A subunit [Escherichia coli O157:H7 str... gi\|208726793, gi... - gi\|208806992\|ref\|ZP_03249329.1\| NADH-quinone oxidoreductase, A subunit [Escherichia coli O157:H7 str... gi\|195935665 - gi\|195935665\|ref\|ZP_03081047.1\| NADH dehydrogenase subunit A [Escherichia coli O157:H7 str. EC4024] gi\|194424992, gi... - gi\|194436264\|ref\|ZP_03068366.1\| NADH-quinone oxidoreductase, A subunit [Escherichia coli 101-1], gi\|... gi\|215265573, gi... - gi\|215487501\|ref\|YP_002329932.1\| NADH dehydrogenase subunit A [Escherichia coli O127:H6 str. E2348/6... gi\|209912995, gi... - gi\|209919736\|ref\|YP_002293820.1\| NADH dehydrogenase subunit A [Escherichia coli SE11], gi\|209912995\|... gi\|209161680, gi... - gi\|209400280\|ref\|YP_002271697.1\| NADH-quinone oxidoreductase, A subunit [Escherichia coli O157:H7 st... gi\|208738916, gi... - gi\|208818793\|ref\|ZP_03259113.1\| NADH-quinone oxidoreductase, A subunit [Escherichia coli O157:H7 str... gi\|188487390, gi... - gi\|188492191\|ref\|ZP_02999461.1\| NADH-quinone oxidoreductase, A subunit [Escherichia coli 53638], gi\|... NUOA_SHIB3 - NADH-quinone oxidoreductase subunit A OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN... gi\|170123822, gi... - gi\|170767488\|ref\|ZP_02901941.1\| NADH-quinone oxidoreductase, A subunit [Escherichia albertii TW07627... NUOA_ECOSM - NADH-quinone oxidoreductase subunit A OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=nuoA PE=3 SV=1 gi\|194427118, gi... - gi\|194427118\|ref\|ZP_03059669.1\| NADH-quinone oxidoreductase, A subunit [Escherichia coli B171], gi\|1... gi\|193062316, gi... - gi\|193062316\|ref\|ZP_03043411.1\| NADH-quinone oxidoreductase, A subunit [Escherichia coli E22], gi\|19... gi\|191170282, gi... - gi\|191170282\|ref\|ZP_03031836.1\| NADH-quinone oxidoreductase, A subunit [Escherichia coli F11], gi\|19... gi\|190903478, gi... - gi\|191166518\|ref\|ZP_03028348.1\| NADH-quinone oxidoreductase, A subunit [Escherichia coli B7A], gi\|19... gi\|227835694, gi... - gi\|227887344\|ref\|ZP_04005149.1\| NADH dehydrogenase subunit A [Escherichia coli 83972], gi\|227835694\|... gi\|238861873, gi... - gi\|238901463\|ref\|YP_002927259.1\| NADH:ubiquinone oxidoreductase, membrane subunit A [Escherichia col... gi\|237704762, gi... - gi\|237704762\|ref\|ZP_04535243.1\| NADH-quinone oxidoreductase [Escherichia sp. 3_2_53FAA], gi\|22690112... gi\|253978365, gi... - gi\|254289058\|ref\|YP_003054806.1\| NADH dehydrogenase subunit A [Escherichia coli BL21(DE3)], gi\|25397... gi\|251785648, gi... - gi\|251785648\|ref\|YP_002999952.1\| hypothetical protein B21_02173 [Escherichia coli BL21], gi\|24237792... gi\|254593580, gi... - gi\|254794180\|ref\|YP_003079017.1\| NADH:ubiquinone oxidoreductase, membrane subunit A [Escherichia col... gi\|253974198, gi... - gi\|254162297\|ref\|YP_003045405.1\| NADH dehydrogenase subunit A [Escherichia coli B str. REL606], gi\|2... gi\|13362642 - gi\|13362642\|dbj\|BAB36595.1\| NADH dehydrogenase I chain A [Escherichia coli O157:H7 str. Sakai] gi\|89109106, gi\|... - gi\|89109106\|ref\|AP_002886.1\| NADH:ubiquinone oxidoreductase, membrane subunit A [Escherichia coli st... NUOA_ECOUT - NADH-quinone oxidoreductase subunit A OS=Escherichia coli (strain UTI89 / UPEC) GN=nuoA PE=3 SV=1 NUOA_ECOL5 - NADH-quinone oxidoreductase subunit A OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=nuoA PE=... NUOA_SHIF8 - NADH-quinone oxidoreductase subunit A OS=Shigella flexneri serotype 5b (strain 8401) GN=nuoA PE=3 SV...	2.0E-36	[1..147]	[1..147]
gi\|12516641, gi\|... - gi\|15802835\|ref\|NP_288862.1\| NADH dehydrogenase subunit A [Escherichia coli O157:H7 EDL933], gi\|1251... gi\|25285105 - gi\|25285105\|pir\|\|E85869 NADH dehydrogenase I chain A [imported] - Escherichia coli (strain O157:H7,...	4.0E-36	[1..147]	[1..147]
gi\|75238071 - gi\|75238071\|ref\|ZP_00722076.1\| COG0838: NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Escheric...	1.0E-35	[3..147]	[1..145]
gi\|38704072 - gi\|38704072\|ref\|NP_311199.2\| NADH dehydrogenase subunit A [Escherichia coli O157:H7 str. Sakai] gi\|75187070 - gi\|75187070\|ref\|ZP_00700337.1\| COG0838: NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Escheric... gi\|75196331 - gi\|75196331\|ref\|ZP_00706401.1\| COG0838: NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Escheric... gi\|75211691 - gi\|75211691\|ref\|ZP_00711770.1\| COG0838: NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Escheric... gi\|75230331 - gi\|75230331\|ref\|ZP_00716821.1\| COG0838: NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Escheric... gi\|194433296, gi... - gi\|194433296\|ref\|ZP_03065576.1\| NADH-quinone oxidoreductase, A subunit [Shigella dysenteriae 1012], ... gi\|75243099 - gi\|75243099\|ref\|ZP_00726805.1\| COG0838: NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Escheric... gi\|33347643\|ref\|... - NADH dehydrogenase I chain A [Escherichia coli K12], NADH dehydrogenase I chain A [Escherichia coli ... gi\|75259746 - gi\|75259746\|ref\|ZP_00731048.1\| COG0838: NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Escheric... gi\|75512760 - gi\|75512760\|ref\|ZP_00735262.1\| COG0838: NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Escheric... gi\|83588271 - gi\|83588271\|ref\|ZP_00926896.1\| COG0838: NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Escheric... gi\|75177924 - gi\|75177924\|ref\|ZP_00697986.1\| COG0838: NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Shigella... gi\|38704072 - gi\|38704072\|ref\|NP_311199.2\| NADH dehydrogenase alpha subunit [Escherichia coli O157:H7]	1.0E-35	[3..147]	[1..145]
gi\|110829209, gi... - gi\|121609762\|ref\|YP_997569.1\| NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 [Verminephrobact...	2.0E-35	[10..125]	[20..135]
NUOA_YERPS - NADH-quinone oxidoreductase subunit A OS=Yersinia pseudotuberculosis GN=nuoA PE=3 SV=1 NUOA_YERPE - NADH-quinone oxidoreductase subunit A OS=Yersinia pestis GN=nuoA PE=3 SV=2 NUOA_YERPS - NADH-quinone oxidoreductase subunit A OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=... NUOA_YERPP - NADH-quinone oxidoreductase subunit A OS=Yersinia pestis (strain Pestoides F) GN=nuoA PE=3 SV=1 gi\|45442155, gi\|... - gi\|45442155\|ref\|NP_993694.1\| NADH dehydrogenase subunit A [Yersinia pestis biovar Microtus str. 9100... gi\|165925566, gi... - gi\|165925566\|ref\|ZP_02221398.1\| NADH-quinone oxidoreductase, A subunit [Yersinia pestis biovar Orien... gi\|22125525, gi\|... - gi\|22125525\|ref\|NP_668948.1\| NADH dehydrogenase subunit A [Yersinia pestis KIM], gi\|21958424\|gb\|AAM8... NUOA_YERPG - NADH-quinone oxidoreductase subunit A OS=Yersinia pestis bv. Antiqua (strain Angola) GN=nuoA PE=3 SV... gi\|89105752, gi\|... - gi\|89105752\|ref\|ZP_01178266.1\| COG0838: NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Yersinia... gi\|166204954, gi... - gi\|166213780\|ref\|ZP_02239815.1\| NADH-quinone oxidoreductase, A subunit [Yersinia pestis biovar Antiq... NUOA_YERP3 - NADH-quinone oxidoreductase subunit A OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)... gi\|167399190, gi... - gi\|167399190\|ref\|ZP_02304714.1\| NADH-quinone oxidoreductase, A subunit [Yersinia pestis biovar Antiq... gi\|167422316, gi... - gi\|167422316\|ref\|ZP_02314069.1\| NADH-quinone oxidoreductase, A subunit [Yersinia pestis biovar Orien... gi\|167424650, gi... - gi\|167424650\|ref\|ZP_02316403.1\| NADH-quinone oxidoreductase, A subunit [Yersinia pestis biovar Media... NUOA_YERPY - NADH-quinone oxidoreductase subunit A OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=... NUOA_YERPA - NADH-quinone oxidoreductase subunit A OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=nuoA PE=3 S... NUOA_YERPN - NADH-quinone oxidoreductase subunit A OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=nuoA PE=3 ... gi\|229694463, gi... - gi\|229838097\|ref\|ZP_04458256.1\| NADH:ubiquinone oxidoreductase, membrane subunit A [Yersinia pestis ... gi\|229701782, gi... - gi\|229895296\|ref\|ZP_04510470.1\| NADH:ubiquinone oxidoreductase, membrane subunit A [Yersinia pestis ... gi\|229898657, gi... - gi\|229898657\|ref\|ZP_04513802.1\| NADH:ubiquinone oxidoreductase, membrane subunit A [Yersinia pestis ...	2.0E-35	[1..144]	[1..144]
gi\|16357130, gi\|... - gi\|16357130\|ref\|NP_443236.1\| NADH dehydrogenase subunit 3 [Chlorophthalmus agassizi], gi\|16266826\|db...	2.0E-35	[13..125]	[1..114]
gi\|77976302, gi\|... - gi\|77976302\|ref\|ZP_00831803.1\| COG0838: NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Yersinia...	3.0E-35	[3..144]	[1..142]
gi\|108767360, gi... - gi\|108767360\|ref\|YP_636090.1\| NADH dehydrogenase subunit 3 [Chondrostoma lemmingii], gi\|105873619\|gb...	3.0E-35	[13..125]	[1..114]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMSTSTEVI AHHWAFAIFL IVAIGLCCLM LVGGWFLGGR ARARHKNVPF ESGIDSVGTA  60
   61 RLRLSAKFYL VAMFFVIFDV EALYLFAWST SIRESGWVGF VEAAIFIFVL LAGLVYLARI 120
  121 GALDWTPARS RRERMNPETN SIANRQR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	36.420216
Match:	PF00507.10
Description:	No description for PF00507.10 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits