YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|195633417, gi...
Organism:	Salmonella enterica subsp. enterica serovar Newport str. SL317
Length:	130 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|195633417, gi....

Description	E-value	Query Range	Subject Range
gi\|26249594, gi\|... - gi\|26249594\|ref\|NP_755634.1\| hypothetical protein c3763 [Escherichia coli CFT073], gi\|26110002\|gb\|AA...	7.0E-51	[1..130]	[20..149]
gi\|237706226, gi... - gi\|237706226\|ref\|ZP_04536707.1\| ygiW [Escherichia sp. 3_2_53FAA], gi\|226899266\|gb\|EEH85525.1\| ygiW [... gi\|254038193, gi... - gi\|254038193\|ref\|ZP_04872251.1\| ygiW [Escherichia sp. 1_1_43], gi\|226839817\|gb\|EEH71838.1\| ygiW [Esc... gi\|91212441, gi\|... - gi\|91212441\|ref\|YP_542427.1\| hypothetical protein UTI89_C3449 [Escherichia coli UTI89], gi\|91074015\|...	2.0E-50	[1..130]	[20..149]
gi\|30042631, gi\|... - gi\|30064374\|ref\|NP_838545.1\| hypothetical protein S3269 [Shigella flexneri 2a str. 2457T], gi\|300426... gi\|56480242, gi\|... - gi\|56480242\|ref\|NP_708836.2\| hypothetical protein SF3065 [Shigella flexneri 2a str. 301], gi\|5638379...	5.0E-50	[1..130]	[1..130]
gi\|110616466, gi... - gi\|110806918\|ref\|YP_690438.1\| hypothetical protein SFV_3070 [Shigella flexneri 5 str. 8401], gi\|1106... YGIW_ECOLI - Protein ygiW precursor - Escherichia coli gi\|15833160, gi\|... - gi\|15833160\|ref\|NP_311933.1\| hypothetical protein ECs3906 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|110643265, gi... - gi\|110643265\|ref\|YP_670995.1\| protein YgiW precursor [Escherichia coli 536], gi\|110344857\|gb\|ABG7109... gi\|208733829, gi... - gi\|208812552\|ref\|ZP_03253881.1\| conserved hypothetical protein TIGR00156 [Escherichia coli O157:H7 s... gi\|208741807, gi... - gi\|208821684\|ref\|ZP_03262004.1\| conserved hypothetical protein TIGR00156 [Escherichia coli O157:H7 s... gi\|209159281, gi... - gi\|209397881\|ref\|YP_002272498.1\| conserved hypothetical protein TIGR00156 [Escherichia coli O157:H7 ... gi\|209920496, gi... - gi\|209920496\|ref\|YP_002294580.1\| hypothetical protein ECSE_3305 [Escherichia coli SE11], gi\|20991375... gi\|217327217, gi... - gi\|217327217\|ref\|ZP_03443300.1\| conserved hypothetical protein TIGR00156 [Escherichia coli O157:H7 s... gi\|218555594, gi... - gi\|218555594\|ref\|YP_002388507.1\| hypothetical protein ECIAI1_3172 [Escherichia coli IAI1], gi\|218362... gi\|218366870, gi... - gi\|218560101\|ref\|YP_002393014.1\| hypothetical protein ECS88_3410 [Escherichia coli S88], gi\|21836687... gi\|218691321, gi... - gi\|218691321\|ref\|YP_002399533.1\| hypothetical protein ECED1_3681 [Escherichia coli ED1a], gi\|2184288... gi\|168781896, gi... - gi\|189000580\|gb\|EDU69566.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|189374107, gi... - gi\|189374107\|gb\|EDU92523.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|189379769, gi... - gi\|189379769\|gb\|EDU98185.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|170018722, gi... - gi\|170018722\|ref\|YP_001723676.1\| hypothetical protein EcolC_0673 [Escherichia coli ATCC 8739], gi\|16... gi\|170082567, gi... - gi\|170082567\|ref\|YP_001731887.1\| hypothetical protein ECDH10B_3198 [Escherichia coli str. K-12 subst... gi\|194431636, gi... - gi\|194431636\|ref\|ZP_03063927.1\| conserved hypothetical protein [Shigella dysenteriae 1012], gi\|19441... gi\|195937166 - gi\|195937166\|ref\|ZP_03082548.1\| hypothetical protein EscherichcoliO157_12056 [Escherichia coli O157:... gi\|208726817, gi... - gi\|208807016\|ref\|ZP_03249353.1\| conserved hypothetical protein TIGR00156 [Escherichia coli O157:H7 s... gi\|218696730, gi... - gi\|218696730\|ref\|YP_002404397.1\| hypothetical protein EC55989_3440 [Escherichia coli 55989], gi\|2183... gi\|218371782, gi... - gi\|218701796\|ref\|YP_002409425.1\| hypothetical protein ECIAI39_3519 [Escherichia coli IAI39], gi\|2183... gi\|218706651, gi... - gi\|218706651\|ref\|YP_002414170.1\| hypothetical protein ECUMN_3509 [Escherichia coli UMN026], gi\|21843... gi\|82545282, gi\|... - gi\|82545282\|ref\|YP_409229.1\| hypothetical protein SBO_2883 [Shigella boydii Sb227], gi\|81246693\|gb\|A... gi\|89109794, gi\|... - gi\|89109794\|ref\|AP_003574.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|115514454, gi... - gi\|117625330\|ref\|YP_854599.1\| hypothetical protein APECO1_3397 [Escherichia coli APEC O1], gi\|115514... gi\|192959366, gi... - gi\|75239399\|ref\|ZP_00723370.1\| COG3111: Uncharacterized conserved protein [Escherichia coli E110019]... gi\|124526062, gi... - gi\|124526062\|ref\|ZP_01698067.1\| conserved hypothetical protein 156 [Escherichia coli B], gi\|12450216... gi\|190907203, gi... - gi\|75240521\|ref\|ZP_00724449.1\| COG3111: Uncharacterized conserved protein [Escherichia coli F11], gi... gi\|194426466, gi... - gi\|75212337\|ref\|ZP_00712361.1\| COG3111: Uncharacterized conserved protein [Escherichia coli B171], g... gi\|190902398, gi... - gi\|75229295\|ref\|ZP_00715854.1\| COG3111: Uncharacterized conserved protein [Escherichia coli B7A], gi... gi\|73857040, gi\|... - gi\|74313563\|ref\|YP_311982.1\| hypothetical protein SSON_3163 [Shigella sonnei Ss046], gi\|73857040\|gb\|... gi\|82778366, gi\|... - gi\|82778366\|ref\|YP_404715.1\| hypothetical protein SDY_3215 [Shigella dysenteriae Sd197], gi\|81242514... gi\|75259963, gi\|... - gi\|75259963\|ref\|ZP_00731241.1\| COG3111: Uncharacterized conserved protein [Escherichia coli E22], gi... gi\|188490380, gi... - gi\|75515182\|ref\|ZP_00737366.1\| COG3111: Uncharacterized conserved protein [Escherichia coli 53638], ... gi\|188017959, gi... - gi\|188017959\|gb\|EDU56081.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|157157531, gi... - gi\|75187840\|ref\|ZP_00701107.1\| COG3111: Uncharacterized conserved protein [Escherichia coli E24377A]... gi\|189358549, gi... - gi\|189358549\|gb\|EDU76968.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|75196982, gi\|... - gi\|75196982\|ref\|ZP_00707052.1\| COG3111: Uncharacterized conserved protein [Escherichia coli HS], gi\|... gi\|189369221, gi... - gi\|189369221\|gb\|EDU87637.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|194424397, gi... - gi\|83587534\|ref\|ZP_00926161.1\| COG3111: Uncharacterized conserved protein [Escherichia coli 101-1], ... gi\|168767043, gi... - gi\|189363876\|gb\|EDU82295.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|75178925, gi\|... - gi\|75178925\|ref\|ZP_00698961.1\| COG3111: Uncharacterized conserved protein [Shigella boydii BS512], g... gi\|168773323, gi... - gi\|187770799\|gb\|EDU34643.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... EG13025 - hydrogen peroxide and cadmium resistance periplasmic protein; stress-induced OB-fold protein / Hydro... YGIW_ECO57 - Protein YgiW OS=Escherichia coli O157:H7 GN=ygiW PE=3 SV=1 gi\|15803566, gi\|... - gi\|15803566\|ref\|NP_289599.1\| hypothetical protein Z4376 [Escherichia coli O157:H7 EDL933], gi\|125175... EG13025 - hydrogen peroxide and cadmium resistance periplasmic protein; stress-induced OB-fold protein / Hydro... gi\|238860378, gi... - gi\|238902137\|ref\|YP_002927933.1\| hypothetical protein BWG_2737 [Escherichia coli BW2952], gi\|2388603... gi\|242378576, gi... - gi\|251786303\|ref\|YP_003000607.1\| hypothetical protein B21_02846 [Escherichia coli BL21], gi\|24237857... gi\|253979030, gi... - gi\|254289723\|ref\|YP_003055471.1\| hypothetical protein ECD_02896 [Escherichia coli BL21(DE3)], gi\|253... gi\|253974874, gi... - gi\|254162973\|ref\|YP_003046081.1\| hypothetical protein ECB_02896 [Escherichia coli B str. REL606], gi... gi\|254794976, gi... - gi\|254794976\|ref\|YP_003079813.1\| hypothetical protein ECSP_3998 [Escherichia coli O157:H7 str. TW143...	6.0E-50	[1..130]	[1..130]
gi\|37525341, gi\|... - gi\|37525341\|ref\|NP_928685.1\| hypothetical protein plu1385 [Photorhabdus luminescens subsp. laumondii...	3.0E-42	[1..129]	[2..139]
gi\|229899187, gi... - gi\|229899187\|ref\|ZP_04514330.1\| putative exported protein [Yersinia pestis biovar Orientalis str. In... gi\|229895687, gi... - gi\|229895687\|ref\|ZP_04510858.1\| putative exported protein [Yersinia pestis Pestoides A], gi\|22970149... gi\|21958233, gi\|... - gi\|22125352\|ref\|NP_668775.1\| hypothetical protein y1455 [Yersinia pestis KIM], gi\|21958233\|gb\|AAM850... gi\|229694987, gi... - gi\|229838621\|ref\|ZP_04458780.1\| putative exported protein [Yersinia pestis biovar Orientalis str. PE... gi\|25325127 - pir\|\|AB0368 probable exported protein YPO3027 [imported] - Yersinia pestis (strain CO92) gi\|51597063, gi\|... - gi\|51597063\|ref\|YP_071254.1\| hypothetical protein YPTB2745 [Yersinia pseudotuberculosis IP 32953], g... gi\|89103950, gi\|... - gi\|89103950\|ref\|ZP_01176509.1\| COG3111: Uncharacterized conserved protein [Yersinia pestis biovar Or... gi\|45442426, gi\|... - gi\|45442426\|ref\|NP_993965.1\| hypothetical protein YP_2650 [Yersinia pestis biovar Microtus str. 9100... gi\|108808209, gi... - gi\|108808209\|ref\|YP_652125.1\| hypothetical protein YPA_2215 [Yersinia pestis Antiqua], gi\|108780122\|... gi\|108811521, gi... - gi\|229901787\|ref\|ZP_04516909.1\| putative exported protein [Yersinia pestis Nepal516], gi\|229681716\|g... gi\|115348683, gi... - gi\|218930072\|ref\|YP_002347947.1\| hypothetical protein YPO3027 [Yersinia pestis CO92], gi\|16123204\|re... Q668J3\|Q668J3_YERPS - Putative exported protein precursor - Yersinia pseudotuberculosis gi\|145599407, gi... - gi\|145599407\|ref\|YP_001163483.1\| hypothetical protein YPDSF_2133 [Yersinia pestis Pestoides F], gi\|1... gi\|149365112, gi... - gi\|149365112\|ref\|ZP_01887147.1\| putative exported protein [Yersinia pestis CA88-4125], gi\|149291525\|... gi\|77633116, gi\|... - gi\|77633116\|ref\|ZP_00795266.1\| COG3111: Uncharacterized conserved protein [Yersinia pestis Angola], ... gi\|166212525, gi... - gi\|166212525\|ref\|ZP_02238560.1\| OB-fold nucleic acid binding domain protein [Yersinia pestis biovar ... gi\|167052199, gi... - gi\|167399695\|ref\|ZP_02305219.1\| OB-fold nucleic acid binding domain protein [Yersinia pestis biovar ... gi\|167422661, gi... - gi\|167422661\|ref\|ZP_02314414.1\| OB-fold nucleic acid binding domain protein [Yersinia pestis biovar ... gi\|167424533, gi... - gi\|167424533\|ref\|ZP_02316286.1\| OB-fold nucleic acid binding domain protein [Yersinia pestis biovar ... gi\|167469639 - gi\|167469639\|ref\|ZP_02334343.1\| OB-fold nucleic acid binding domain protein [Yersinia pestis FV-1] gi\|165921187, gi... - gi\|165926836\|ref\|ZP_02222668.1\| OB-fold nucleic acid binding domain protein [Yersinia pestis biovar ... gi\|166011154, gi... - gi\|166011154\|ref\|ZP_02232052.1\| OB-fold nucleic acid binding domain protein [Yersinia pestis biovar ...	6.0E-42	[1..128]	[1..136]
gi\|153948155, gi... - gi\|77629791\|ref\|ZP_00792377.1\| COG3111: Uncharacterized conserved protein [Yersinia pseudotuberculos... gi\|170023639, gi... - gi\|170023639\|ref\|YP_001720144.1\| hypothetical protein YPK_1397 [Yersinia pseudotuberculosis YPIII], ...	2.0E-41	[1..128]	[1..136]
gi\|77974591, gi\|... - gi\|77974591\|ref\|ZP_00830130.1\| COG3111: Uncharacterized conserved protein [Yersinia frederiksenii AT...	2.0E-41	[1..128]	[1..136]
gi\|238783889, gi... - gi\|77959009\|ref\|ZP_00823034.1\| COG3111: Uncharacterized conserved protein [Yersinia bercovieri ATCC ...	6.0E-41	[1..128]	[1..136]
gi\|47168420 - gi\|47168420\|pdb\|1NNX\|A Chain A, Structure Of The Hypothetical Protein Ygiw From E. Coli	4.0E-40	[22..130]	[1..109]

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Predicted Domain #1

Region A:
Residues: [1-130]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKLAAIVAV MALCSTPVLA AQQGGFSGPS ATQTQGGGFV GPNGSSTTVE SAKSLRDDAW  60
   61 VTLRGNIVER ISDDLYVFKD ATGTINVDID HKRWNGLTVT PQDTVEIQGE VDKDWNSVEI 120
  121 DVKQIRKVNP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.522879
Match:	1nnxA
Description:	Structure of the hypothetical protein ygiW from E. coli.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits