YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|168462807, gi...
Organism:	Salmonella enterica subsp. enterica serovar Newport str. SL317
Length:	196 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|168462807, gi....

Description	E-value	Query Range	Subject Range
gi\|67153890, gi\|... - gi\|67153890\|ref\|ZP_00415635.1\| ATP:corrinoid adenosyltransferase BtuR/CobO/CobP:TonB-dependent vitam...	319.0	[0..3]	[196..851]
gi\|208741185, gi... - gi\|208821062\|ref\|ZP_03261382.1\| cob(I)yrinic acid a,c-diamide adenosyltransferase [Escherichia coli ... gi\|208815966, gi... - gi\|208815966\|ref\|ZP_03257145.1\| cob(I)yrinic acid a,c-diamide adenosyltransferase [Escherichia coli ... gi\|208810937, gi... - gi\|208810937\|ref\|ZP_03252770.1\| cob(I)yrinic acid a,c-diamide adenosyltransferase [Escherichia coli ... gi\|195939203 - gi\|195939203\|ref\|ZP_03084585.1\| cob(I)yrinic acid a,c-diamide adenosyltransferase [Escherichia coli ... gi\|15831096, gi\|... - gi\|15831096\|ref\|NP_309869.1\| cob(I)yrinic acid a,c-diamide adenosyltransferase [Escherichia coli O15... gi\|217329239, gi... - gi\|217329239\|ref\|ZP_03445319.1\| cob(I)yrinic acid a,c-diamide adenosyltransferase [Escherichia coli ... gi\|25345533, gi\|... - pir\|\|E85760 cob(I)alamin adenolsyltransferase [imported] - Escherichia coli (strain O157:H7, substra... gi\|209160216, gi... - gi\|209398816\|ref\|YP_002270324.1\| cob(I)yrinic acid a,c-diamide adenosyltransferase [Escherichia coli... gi\|254592258, gi... - gi\|254792858\|ref\|YP_003077695.1\| cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsy... gi\|168771268, gi... - gi\|189359956\|gb\|EDU78375.1\| cob(I)yrinic acid a,c-diamide adenosyltransferase [Escherichia coli O157... gi\|15801909, gi\|... - gi\|15801909\|ref\|NP_287929.1\| cob(I)yrinic acid a,c-diamide adenosyltransferase [Escherichia coli O15... gi\|189366237, gi... - gi\|189366237\|gb\|EDU84653.1\| cob(I)yrinic acid a,c-diamide adenosyltransferase [Escherichia coli O157... gi\|189354810, gi... - gi\|189354810\|gb\|EDU73229.1\| cob(I)yrinic acid a,c-diamide adenosyltransferase [Escherichia coli O157... gi\|168751158, gi... - gi\|188014783\|gb\|EDU52905.1\| cob(I)yrinic acid a,c-diamide adenosyltransferase [Escherichia coli O157... gi\|168801616, gi... - gi\|189376254\|gb\|EDU94670.1\| cob(I)yrinic acid a,c-diamide adenosyltransferase [Escherichia coli O157... gi\|168790069, gi... - gi\|189370447\|gb\|EDU88863.1\| cob(I)yrinic acid a,c-diamide adenosyltransferase [Escherichia coli O157... gi\|188998971, gi... - gi\|188998971\|gb\|EDU67957.1\| cob(I)yrinic acid a,c-diamide adenosyltransferase [Escherichia coli O157... gi\|187769240, gi... - gi\|187769240\|gb\|EDU33084.1\| cob(I)yrinic acid a,c-diamide adenosyltransferase [Escherichia coli O157... gi\|15831096, gi\|... - gi\|15831096\|ref\|NP_309869.1\| cob(I)yrinic acid a,c-diamide adenosyltransferase [Escherichia coli O15...	312.0	[0..1]	[196..1]
gi\|75242069, gi\|... - gi\|75242069\|ref\|ZP_00725863.1\| COG2109: ATP:corrinoid adenosyltransferase [Escherichia coli F11], gi... gi\|218426824, gi... - gi\|218689260\|ref\|YP_002397472.1\| cob(I)yrinic acid a,c-diamide adenosyltransferase [Escherichia coli... gi\|110641501, gi... - gi\|110641501\|ref\|YP_669231.1\| cob(I)yrinic acid a,c-diamide adenosyltransferase [Escherichia coli 53...	312.0	[0..1]	[196..1]
gi\|194424112, gi... - gi\|83587407\|ref\|ZP_00926035.1\| COG2109: ATP:corrinoid adenosyltransferase [Escherichia coli 101-1], ... gi\|157160775, gi... - gi\|75195418\|ref\|ZP_00705488.1\| COG2109: ATP:corrinoid adenosyltransferase [Escherichia coli HS], gi\|... gi\|188492719, gi... - gi\|75515118\|ref\|ZP_00737322.1\| COG2109: ATP:corrinoid adenosyltransferase [Escherichia coli 53638], ... gi\|227886302, gi... - gi\|227886302\|ref\|ZP_04004107.1\| cob(I)yrinic acid a,c-diamide adenosyltransferase [Escherichia coli ... BTUR_ECOLI - Cob(I)yrinic acid a,c-diamide adenosyltransferase (EC 2.5.1.17) (Cob(I)alamin adenosyltransferase) (... gi\|89108116, gi\|... - gi\|89108116\|ref\|AP_001896.1\| cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltra... gi\|238860157, gi... - gi\|238900503\|ref\|YP_002926299.1\| cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsy... gi\|251784776, gi... - gi\|251784776\|ref\|YP_002999080.1\| hypothetical protein B21_01256 [Escherichia coli BL21], gi\|24237704... gi\|254288158, gi... - gi\|254288158\|ref\|YP_003053906.1\| cob(I)yrinic acid a,c-diamide adenosyltransferase [Escherichia coli... gi\|253973251, gi... - gi\|254161350\|ref\|YP_003044458.1\| cob(I)yrinic acid a,c-diamide adenosyltransferase [Escherichia coli... EG10130 - cob(I)yrinic acid a,c-diamide adenosyltransferase / Cobinamide adenosyltransferase EG10130 - cob(I)yrinic acid a,c-diamide adenosyltransferase / Cobinamide adenosyltransferase gi\|218553821, gi... - gi\|218553821\|ref\|YP_002386734.1\| cob(I)yrinic acid a,c-diamide adenosyltransferase [Escherichia coli... gi\|170080947, gi... - gi\|170080947\|ref\|YP_001730267.1\| cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsy... BTUR_ECOL6 - Cob(I)yrinic acid a,c-diamide adenosyltransferase OS=Escherichia coli O6 GN=btuR PE=3 SV=1 BTUR_ECOL6 - Cob(I)yrinic acid a,c-diamide adenosyltransferase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 70...	311.0	[0..1]	[196..1]
gi\|209911768, gi... - gi\|209918509\|ref\|YP_002292593.1\| cob(I)yrinic acid a,c-diamide adenosyltransferase [Escherichia coli... gi\|218351572, gi... - gi\|218694840\|ref\|YP_002402507.1\| cob(I)yrinic acid a,c-diamide adenosyltransferase [Escherichia coli... gi\|193062538, gi... - gi\|75259380\|ref\|ZP_00730699.1\| COG2109: ATP:corrinoid adenosyltransferase [Escherichia coli E22], gi... gi\|191166655, gi... - gi\|75230174\|ref\|ZP_00716675.1\| COG2109: ATP:corrinoid adenosyltransferase [Escherichia coli B7A], gi... gi\|75212707, gi\|... - gi\|75212707\|ref\|ZP_00712705.1\| COG2109: ATP:corrinoid adenosyltransferase [Escherichia coli B171], g... gi\|157081281, gi... - gi\|75190354\|ref\|ZP_00703621.1\| COG2109: ATP:corrinoid adenosyltransferase [Escherichia coli E24377A]... gi\|73855838, gi\|... - gi\|74312361\|ref\|YP_310780.1\| cob(I)yrinic acid a,c-diamide adenosyltransferase [Shigella sonnei Ss04...	311.0	[0..1]	[196..1]
gi\|218365024, gi... - gi\|218558255\|ref\|YP_002391168.1\| cob(I)yrinic acid a,c-diamide adenosyltransferase [Escherichia coli... gi\|117623530, gi... - gi\|117623530\|ref\|YP_852443.1\| cob(I)yrinic acid a,c-diamide adenosyltransferase [Escherichia coli AP... gi\|237705293, gi... - gi\|237705293\|ref\|ZP_04535774.1\| cob(I)yrinic acid a,c-diamide adenosyltransferase [Escherichia sp. 3... gi\|91210561, gi\|... - gi\|91210561\|ref\|YP_540547.1\| cob(I)yrinic acid a,c-diamide adenosyltransferase [Escherichia coli UTI...	311.0	[0..1]	[196..1]
gi\|82776629, gi\|... - gi\|82776629\|ref\|YP_402978.1\| cob(I)yrinic acid a,c-diamide adenosyltransferase [Shigella dysenteriae...	311.0	[0..1]	[196..1]
gi\|197362280, gi... - gi\|197362280\|ref\|YP_002141917.1\| cob(I)yrinic acid a,c-diamide adenosyltransferase [Salmonella enter... gi\|56127613, gi\|... - gi\|56413356\|ref\|YP_150431.1\| cob(I)yrinic acid a,c-diamide adenosyltransferase [Salmonella enterica ...	309.0	[0..1]	[196..1]
gi\|24051581, gi\|... - gi\|24112667\|ref\|NP_707177.1\| cob(I)yrinic acid a,c-diamide adenosyltransferase [Shigella flexneri 2a... gi\|30062792, gi\|... - gi\|30062792\|ref\|NP_836963.1\| cob(I)yrinic acid a,c-diamide adenosyltransferase [Shigella flexneri 2a... gi\|110805272, gi... - gi\|110805272\|ref\|YP_688792.1\| cob(I)yrinic acid a,c-diamide adenosyltransferase [Shigella flexneri 5...	309.0	[0..1]	[196..1]
gi\|58198667\|gb\|A... - cob(I)alamin adenosyltransferase [Escherichia blattae] gi\|58198667 - gi\|58198667\|gb\|AAW65977.1\| cob(I)alamin adenosyltransferase [Escherichia blattae]	309.0	[0..1]	[196..1]

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Predicted Domain #1

Region A:
Residues: [1-196]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDERYQQRQ QKVKDRVDAR VAQAQEERGI IIVFTGNGKG KTTAAFGTAA RAVGHGKNVG  60
   61 VVQFIKGTWP NGERNLLEPH GVEFQVMATG FTWETQNREA DTAACMAVWQ HGKRMLADPL 120
  121 LDMVVLDELT YMVAYDYLPL EEVISALNAR PGHQTVIITG RGCHRDILDL ADTVSELRPV 180
  181 KHAFDAGVKA QMGIDY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	84.30103
Match:	1g5rA
Description:	ATP:corrinoid adenosyltransferase CobA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.37148167194523	bayes_pls_golite062009
cob(I)yrinic acid a,c-diamide adenosyltransferase activity	0.0388346549390599	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: