YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213586412
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E98-0664
Length:	231 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213586412.

Description	E-value	Query Range	Subject Range
QUEC_SALCH - 7-cyano-7-deazaguanine synthase OS=Salmonella choleraesuis (strain SC-B67) GN=queC PE=3 SV=2 QUEC_SALCH - Queuosine biosynthesis protein queC OS=Salmonella choleraesuis GN=queC PE=3 SV=2 QUEC_SALCH - 7-cyano-7-deazaguanine synthase OS=Salmonella choleraesuis GN=queC PE=3 SV=2 QUEC_SALPC - 7-cyano-7-deazaguanine synthase OS=Salmonella paratyphi C (strain RKS4594) GN=queC PE=3 SV=1	3.0E-53	[1..231]	[1..231]
gi\|62179067, gi\|... - gi\|62179067\|ref\|YP_215484.1\| queuosine biosynthesis protein QueC [Salmonella enterica subsp. enteric...	4.0E-53	[1..231]	[36..266]
QUEC_SALPK - 7-cyano-7-deazaguanine synthase OS=Salmonella paratyphi A (strain AKU_12601) GN=queC PE=3 SV=1 QUEC_SALPA - 7-cyano-7-deazaguanine synthase OS=Salmonella paratyphi A GN=queC PE=3 SV=1 QUEC_SALPA - 7-cyano-7-deazaguanine synthase OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=queC PE=3 S...	9.0E-53	[1..231]	[1..231]
QUEC_ECOBW - 7-cyano-7-deazaguanine synthase OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=queC PE=3 SV=1 gi\|89107314, gi\|... - gi\|89107314\|ref\|AP_001094.1\| predicted aluminum resistance protein [Escherichia coli str. K-12 subst... QUEC_ECOLI, YBAX... - (P77756) Hypothetical protein ybaX, Queuosine biosynthesis protein queC - Escherichia coli QUEC_ECODH - 7-cyano-7-deazaguanine synthase OS=Escherichia coli (strain K12 / DH10B) GN=queC PE=3 SV=1 EG13252 - 7-cyano-7-deazaguanine (preQ0) synthase; queuosine biosynthesis / 7-cyano-7-deazaguanine (preQ0) syn... EG13252 - 7-cyano-7-deazaguanine (preQ0) synthase; queuosine biosynthesis / 7-cyano-7-deazaguanine (preQ0) syn...	2.0E-52	[1..231]	[1..231]
gi\|75514568, gi\|... - gi\|75514568\|ref\|ZP_00736823.1\| COG0603: Predicted PP-loop superfamily ATPase [Escherichia coli 53638... QUEC_SHISS - 7-cyano-7-deazaguanine synthase OS=Shigella sonnei (strain Ss046) GN=queC PE=3 SV=1 gi\|192959144, gi... - gi\|75239059\|ref\|ZP_00723041.1\| COG0603: Predicted PP-loop superfamily ATPase [Escherichia coli E1100... gi\|75257910, gi\|... - gi\|75257910\|ref\|ZP_00729388.1\| COG0603: Predicted PP-loop superfamily ATPase [Escherichia coli E22],... gi\|30061946, gi\|... - gi\|30061946\|ref\|NP_836117.1\| queuosine biosynthesis protein QueC [Shigella flexneri 2a str. 2457T], ... QUEC_SHIBS - 7-cyano-7-deazaguanine synthase OS=Shigella boydii serotype 4 (strain Sb227) GN=queC PE=3 SV=1 QUEC_SHIB3 - 7-cyano-7-deazaguanine synthase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=queC ... gi\|24111828, gi\|... - gi\|24111828\|ref\|NP_706338.1\| queuosine biosynthesis protein QueC [Shigella flexneri 2a str. 301], gi... gi\|75209799, gi\|... - gi\|75209799\|ref\|ZP_00710001.1\| COG0603: Predicted PP-loop superfamily ATPase [Escherichia coli B171]... gi\|191168270, gi... - gi\|75228539\|ref\|ZP_00715173.1\| COG0603: Predicted PP-loop superfamily ATPase [Escherichia coli B7A],... QUEC_ECO24 - 7-cyano-7-deazaguanine synthase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=queC PE=3 SV... QUEC_ECOHS - 7-cyano-7-deazaguanine synthase OS=Escherichia coli O9:H4 (strain HS) GN=queC PE=3 SV=1 QUEC_SHIFL - 7-cyano-7-deazaguanine synthase OS=Shigella flexneri GN=queC PE=3 SV=1 QUEC_ECOSE - 7-cyano-7-deazaguanine synthase OS=Escherichia coli (strain SE11) GN=queC PE=3 SV=1	2.0E-52	[1..231]	[1..231]
QUEC_SHIF8 - 7-cyano-7-deazaguanine synthase OS=Shigella flexneri serotype 5b (strain 8401) GN=queC PE=3 SV=1	4.0E-52	[1..231]	[1..231]
gi\|254287318, gi... - gi\|254287318\|ref\|YP_003053066.1\| predicted aluminum resistance protein [Escherichia coli BL21(DE3)],... gi\|251783953, gi... - gi\|251783953\|ref\|YP_002998257.1\| hypothetical protein B21_00400 [Escherichia coli BL21], gi\|24237622... QUEC_ECO8A - 7-cyano-7-deazaguanine synthase OS=Escherichia coli O8 (strain IAI1) GN=queC PE=3 SV=1 gi\|254160514, gi... - gi\|254160514\|ref\|YP_003043622.1\| predicted aluminum resistance protein [Escherichia coli B str. REL6... QUEC_ECOLC - 7-cyano-7-deazaguanine synthase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=queC P... gi\|124531653, gi... - gi\|124531653\|ref\|ZP_01701841.1\| exsB protein [Escherichia coli B], gi\|124498431\|gb\|EAY45944.1\| exsB ... gi\|194437541, gi... - gi\|83587100\|ref\|ZP_00925730.1\| COG0603: Predicted PP-loop superfamily ATPase [Escherichia coli 101-1...	5.0E-52	[1..231]	[1..231]
QUEC_SHEDO - 7-cyano-7-deazaguanine synthase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 1501...	6.0E-52	[1..231]	[1..230]
QUEC_VIBPA - 7-cyano-7-deazaguanine synthase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=q... QUEC_VIBPA - 7-cyano-7-deazaguanine synthase OS=Vibrio parahaemolyticus GN=queC PE=3 SV=1	7.0E-52	[1..228]	[1..227]
gi\|194416322, gi... - gi\|194435436\|ref\|ZP_03067614.1\| queuosine biosynthesis protein QueC [Shigella dysenteriae 1012], gi\|... gi\|227838631, gi... - gi\|227884545\|ref\|ZP_04002350.1\| transcriptional regulator [Escherichia coli 83972], gi\|227838631\|gb\|... gi\|226898771, gi... - gi\|237707561\|ref\|ZP_04538042.1\| queuosine biosynthesis protein queC [Escherichia sp. 3_2_53FAA], gi\|... QUEC_ECOL6 - 7-cyano-7-deazaguanine synthase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=qu... QUEC_ECOL5 - 7-cyano-7-deazaguanine synthase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=queC PE=3 SV=1 QUEC_ECOL6 - 7-cyano-7-deazaguanine synthase OS=Escherichia coli O6 GN=queC PE=3 SV=1 QUEC_ECOUT - 7-cyano-7-deazaguanine synthase OS=Escherichia coli (strain UTI89 / UPEC) GN=queC PE=3 SV=1 gi\|190906037, gi... - gi\|75238197\|ref\|ZP_00722198.1\| COG0603: Predicted PP-loop superfamily ATPase [Escherichia coli F11],... QUEC_ECO81 - 7-cyano-7-deazaguanine synthase OS=Escherichia coli O81 (strain ED1a) GN=queC PE=3 SV=1 QUEC_ECO45 - 7-cyano-7-deazaguanine synthase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=queC PE=3 SV=1 QUEC_ECOLU - 7-cyano-7-deazaguanine synthase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=queC PE=3... QUEC_ECO7I - 7-cyano-7-deazaguanine synthase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=queC PE=3 SV=1 QUEC_ECOK1 - 7-cyano-7-deazaguanine synthase OS=Escherichia coli O1:K1 / APEC GN=queC PE=3 SV=1	7.0E-52	[1..231]	[1..231]

Back

Predicted Domain #1

Region A:
Residues: [1-231]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRAVVVFSG GQDSTTCLAQ ARHQYDEVHC VTFDYGQRHR AEIDVARALA LKLGARAHKV  60
   61 LDVTLLNELA VSSLTRDSIP VPDYEPNADG IPNTFVPGRN ILFLTLAAIY AYQVKAEAVI 120
  121 TGVCETDFSG YPDCRDEFVK ALNHAVNLGM AKDIRFETPL MWIDKAETWA LADYWGQLDL 180
  181 VREETLTCYN GIKGDGCGHC AACNLRANGL NHYLSNKAAV MAAMKQKTGL R

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.0
Match:	2pg3A
Description:	No description for 2pg3A was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.432879758487135	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: