YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213619226
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E98-2068
Length:	248 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213619226.

Description	E-value	Query Range	Subject Range
gi\|62126841, gi\|... - gi\|62179208\|ref\|YP_215625.1\| disulfide isomerase/thiol-disulfide oxidase [Salmonella enterica subsp....	4.0E-55	[1..248]	[1..248]
gi\|197094656, gi... - gi\|197363179\|ref\|YP_002142816.1\| disulfide isomerase/thiol-disulfide oxidase [Salmonella enterica su... gi\|238911558 - gi\|238911558\|ref\|ZP_04655395.1\| disulfide isomerase/thiol-disulfide oxidase [Salmonella enterica sub... gi\|207856073, gi... - gi\|207856073\|ref\|YP_002242724.1\| disulfide isomerase/thiol-disulfide oxidase [Salmonella enterica su... lcl\|NC_016856.1_... - [gene=dsbG] [protein=disulfide isomerase/thiol-disulfide oxidase] [protein_id=YP_005236314.1] [locat... gi\|195631835, gi... - gi\|195631835\|gb\|EDX50355.1\| thiol:disulfide interchange protein DsbG [Salmonella enterica subsp. ent... gi\|16419118, gi\|... - gi\|16763984\|ref\|NP_459599.1\| disulfide isomerase/thiol-disulfide oxidase [Salmonella typhimurium LT2... gi\|197265493, gi... - gi\|197265493\|ref\|ZP_03165567.1\| thiol:disulfide interchange protein DsbG [Salmonella enterica subsp.... gi\|167550864, gi... - gi\|205324170\|gb\|EDZ12009.1\| thiol:disulfide interchange protein DsbG [Salmonella enterica subsp. ent... gi\|168260884, gi... - gi\|205349816\|gb\|EDZ36447.1\| thiol:disulfide interchange protein DsbG [Salmonella enterica subsp. ent... gi\|56414256, gi\|... - gi\|56414256\|ref\|YP_151331.1\| disulfide isomerase/thiol-disulfide oxidase [Salmonella enterica subsp....	6.0E-55	[1..248]	[1..248]
gi\|13360101 - gi\|13360101\|dbj\|BAB34066.1\| thiol:disulfide interchange protein [Escherichia coli O157:H7 str. Sakai... gi\|13360101 - gi\|13360101\|dbj\|BAB34066.1\| thiol:disulfide interchange protein [Escherichia coli O157:H7] gi\|209777412, gi... - gi\|25500107\|pir\|\|G85559 thiol,disulfide interchange protein [imported] - Escherichia coli (strain O1... gi\|15800319, gi\|... - gi\|15800319\|ref\|NP_286331.1\| thiol:disulfide interchange protein [Escherichia coli O157:H7 EDL933], ...	7.0E-52	[12..246]	[32..266]
gi\|208823044, gi... - gi\|208823044\|ref\|ZP_03263362.1\| thiol:disulfide interchange protein DsbG [Escherichia coli O157:H7 s... gi\|189358031, gi... - gi\|189402026\|ref\|ZP_02779709.2\| thiol:disulfide interchange protein DsbG [Escherichia coli O157:H7 s... gi\|188024639, gi... - gi\|188024639\|ref\|ZP_02772750.2\| thiol:disulfide interchange protein DsbG [Escherichia coli O157:H7 s... gi\|38703881 - gi\|38703881\|ref\|NP_308670.2\| thiol:disulfide interchange protein [Escherichia coli O157:H7] gi\|38703881 - gi\|38703881\|ref\|NP_308670.2\| thiol:disulfide interchange protein [Escherichia coli O157:H7 str. Saka...	9.0E-52	[12..246]	[30..264]
gi\|30040306, gi\|... - gi\|30062062\|ref\|NP_836233.1\| thiol:disulfide interchange protein [Shigella flexneri 2a str. 2457T], ... gi\|24050762, gi\|... - gi\|24111952\|ref\|NP_706462.1\| thiol:disulfide interchange protein [Shigella flexneri 2a str. 301], gi... gi\|110804600, gi... - gi\|110804600\|ref\|YP_688120.1\| disulfide isomerase/thiol-disulfide oxidase [Shigella flexneri 5 str. ...	1.0E-51	[12..246]	[32..266]
gi\|110342428, gi... - gi\|110640836\|ref\|YP_668564.1\| disulfide isomerase/thiol-disulfide oxidase [Escherichia coli 536], gi...	1.0E-51	[16..246]	[16..246]
gi\|7466109, gi\|1... - gi\|7466109\|pir\|\|B64794 hypothetical protein b0604 - Escherichia coli (strain K-12), gi\|1778522\|gb\|AA... gi\|4062221, gi\|1... - dbj\|BAA35234.1\| unnamed protein product [Escherichia coli K12], gb\|AAC73705.1\| thiol:disulfide inte... gi\|75514699 - gi\|75514699\|ref\|ZP_00736954.1\| COG1651: Protein-disulfide isomerase [Escherichia coli 53638] gi\|75236587 - gi\|75236587\|ref\|ZP_00720675.1\| COG1651: Protein-disulfide isomerase [Escherichia coli E110019]	2.0E-51	[12..246]	[32..266]
gi\|73854616, gi\|... - gi\|74311139\|ref\|YP_309558.1\| disulfide isomerase/thiol-disulfide oxidase [Shigella sonnei Ss046], gi...	2.0E-51	[16..246]	[16..246]
gi\|75258658, gi\|... - gi\|75258658\|ref\|ZP_00730065.1\| COG1651: Protein-disulfide isomerase [Escherichia coli E22], gi\|19306... gi\|75229510, gi\|... - gi\|75229510\|ref\|ZP_00716057.1\| COG1651: Protein-disulfide isomerase [Escherichia coli B7A], gi\|19116... gi\|75210767, gi\|... - gi\|75210767\|ref\|ZP_00710899.1\| COG1651: Protein-disulfide isomerase [Escherichia coli B171], gi\|1944...	3.0E-51	[16..246]	[16..246]
gi\|254591172, gi... - gi\|254791772\|ref\|YP_003076609.1\| periplasmic disulfide isomerase/thiol-disulphide oxidase [Escherich... gi\|217321536, gi... - gi\|217325315\|ref\|ZP_03441399.1\| thiol:disulfide interchange protein DsbG [Escherichia coli O157:H7 s... gi\|209160669, gi... - gi\|209399269\|ref\|YP_002269239.1\| thiol:disulfide interchange protein DsbG [Escherichia coli O157:H7 ... gi\|208816178, gi... - gi\|208816178\|ref\|ZP_03257357.1\| thiol:disulfide interchange protein DsbG [Escherichia coli O157:H7 s... gi\|208808801, gi... - gi\|208808801\|ref\|ZP_03251138.1\| thiol:disulfide interchange protein DsbG [Escherichia coli O157:H7 s... gi\|218698979, gi... - gi\|218698979\|ref\|YP_002406608.1\| disulfide isomerase/thiol-disulfide oxidase [Escherichia coli IAI39... gi\|168774664, gi... - gi\|187769699\|gb\|EDU33543.1\| thiol:disulfide interchange protein DsbG [Escherichia coli O157:H7 str. ... gi\|168770205, gi... - gi\|189360854\|gb\|EDU79273.1\| thiol:disulfide interchange protein DsbG [Escherichia coli O157:H7 str. ... gi\|189369165, gi... - gi\|189369165\|gb\|EDU87581.1\| thiol:disulfide interchange protein DsbG [Escherichia coli O157:H7 str. ... gi\|162139707 - gi\|162139707\|ref\|NP_308670.3\| disulfide isomerase/thiol-disulfide oxidase [Escherichia coli O157:H7 ... gi\|195936153 - gi\|195936153\|ref\|ZP_03081535.1\| disulfide isomerase/thiol-disulfide oxidase [Escherichia coli O157:H... gi\|189379398, gi... - gi\|189379398\|gb\|EDU97814.1\| thiol:disulfide interchange protein DsbG [Escherichia coli O157:H7 str. ... gi\|189373694, gi... - gi\|189373694\|gb\|EDU92110.1\| thiol:disulfide interchange protein DsbG [Escherichia coli O157:H7 str. ... gi\|189002875, gi... - gi\|189002875\|gb\|EDU71861.1\| thiol:disulfide interchange protein DsbG [Escherichia coli O157:H7 str. ... gi\|161367635 - gi\|161367635\|ref\|NP_286331.2\| disulfide isomerase/thiol-disulfide oxidase [Escherichia coli O157:H7 ... DSBG_ECO57 - Thiol:disulfide interchange protein DsbG OS=Escherichia coli O157:H7 GN=dsbG PE=3 SV=1	3.0E-51	[16..246]	[16..246]

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Predicted Domain #1

Region A:
Residues: [1-248]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKRTLLLAM LPILAHAEEL PALVKAIEKQ SITILKSFEA PGGMKGYLGK YQDMGVTIYL  60
   61 TPDGKHAISG YMYNEKGENL SNALIEKEIY APAGREMWQK MEKASWILDG KKDAPVVLYV 120
  121 FADPFCPYCK QFWQQARPWV ESGKVQLRTL LVGVIKPESP ATAAAILAAK NPAKTWHDYE 180
  181 ASAGKMKLEV PASIPPAQMK VINQNQQLMD DLGANATPAI YYMNKDKILQ QVVGLPEKAQ 240
  241 LDAMMGQP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.69897
Match:	1v57A
Description:	Crystal Structure of the Disulfide Bond Isomerase DsbG
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.142133664747919	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: