YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|166011373, gi...
Organism:	Yersinia pestis biovar Antiqua str. E1979001
Length:	328 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|166011373, gi....

Description	E-value	Query Range	Subject Range
Y1546_AQUAE - Uncharacterized phosphosugar isomerase aq_1546 OS=Aquifex aeolicus (strain VF5) GN=aq_1546 PE=3 SV=1 Y1546_AQUAE, YF4... - (O67500) Hypothetical phosphosugar isomerase AQ_1546, Uncharacterized phosphosugar isomerase aq_1546...	7.0E-42	[7..325]	[1..319]
gi\|88949747, gi\|... - gi\|88949747\|ref\|ZP_01152362.1\| KpsF/GutQ [Halorhodospira halophila SL1], gi\|88926927\|gb\|EAR45892.1\| ...	4.0E-40	[9..328]	[19..339]
gi\|154356789, gi... - gi\|94492344\|ref\|ZP_01299552.1\| hypothetical protein CburD_01000676 [Coxiella burnetii Dugway 7E9-12]...	4.0E-40	[6..328]	[1..324]
gi\|53611258, gi\|... - gi\|67156186\|ref\|ZP_00417812.1\| KpsF/GutQ [Azotobacter vinelandii AvOP], ref\|ZP_00090080.2\| COG0794: ... gi\|67086516, gi\|... - gi\|67156186\|ref\|ZP_00417812.1\| KpsF/GutQ [Azotobacter vinelandii AvOP], gi\|67086516\|gb\|EAM05985.1\| K...	5.0E-40	[6..328]	[1..324]
gi\|48863794, gi\|... - gi\|90022816\|ref\|YP_528643.1\| arabinose-5-phosphate isomerase [Saccharophagus degradans 2-40], gi\|899...	7.0E-40	[7..328]	[1..323]
gi\|95926245, gi\|... - gi\|95926245\|ref\|ZP_01309052.1\| hypothetical protein CburR_01001942 [Coxiella burnetii RSA 331], gi\|1... gi\|29541350, gi\|... - gi\|29654084\|ref\|NP_819776.1\| arabinose-5-phosphate isomerase [Coxiella burnetii RSA 493], gi\|2954135...	8.0E-40	[6..327]	[1..323]
gi\|150960935, gi... - gi\|94415571\|ref\|ZP_01295411.1\| hypothetical protein PaerP_01002734 [Pseudomonas aeruginosa PA7], gi\|...	1.0E-39	[6..328]	[1..324]
gi\|145209332, gi... - gi\|145597636\|ref\|YP_001161712.1\| D-arabinose 5-phosphate isomerase [Yersinia pestis Pestoides F], gi... gi\|108813619, gi... - gi\|108813619\|ref\|YP_649386.1\| D-arabinose 5-phosphate isomerase [Yersinia pestis Nepal516], gi\|10877... gi\|21956816, gi\|... - gi\|22124068\|ref\|NP_667491.1\| D-arabinose 5-phosphate isomerase [Yersinia pestis KIM], gi\|21956816\|gb... gi\|77630521, gi\|... - gi\|77630521\|ref\|ZP_00793107.1\| COG0794: Predicted sugar phosphate isomerase involved in capsule form... gi\|108809717, gi... - gi\|108809717\|ref\|YP_653633.1\| D-arabinose 5-phosphate isomerase [Yersinia pestis Antiqua], gi\|108781... gi\|169749295, gi... - gi\|170022761\|ref\|YP_001719266.1\| D-arabinose 5-phosphate isomerase [Yersinia pseudotuberculosis YPII... gi\|89102213 - gi\|89102213\|ref\|ZP_01174864.1\| COG0794: Predicted sugar phosphate isomerase involved in capsule form... gi\|186897005, gi... - gi\|186897005\|ref\|YP_001874117.1\| D-arabinose 5-phosphate isomerase [Yersinia pseudotuberculosis PB1/... gi\|45438432, gi\|... - gi\|45443563\|ref\|NP_995102.1\| D-arabinose 5-phosphate isomerase [Yersinia pestis biovar Microtus str.... gi\|77633100 - gi\|77633100\|ref\|ZP_00795252.1\| COG0794: Predicted sugar phosphate isomerase involved in capsule form...	2.0E-39	[1..328]	[30..357]
gi\|114227768, gi... - gi\|78701814\|ref\|ZP_00866261.1\| KpsF/GutQ [Alkalilimnicola ehrlichei MLHE-1], gi\|78520696\|gb\|EAP33956...	2.0E-39	[7..328]	[19..341]
gi\|89211044, gi\|... - gi\|89211044\|ref\|ZP_01189423.1\| KpsF/GutQ [Halothermothrix orenii H 168], gi\|89159342\|gb\|EAR79011.1\| ...	2.0E-39	[3..327]	[6..330]

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Predicted Domain #1

Region A:
Residues: [1-328]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTFDLQPGV DFQQAGKQVL QIEREGLAQL DQYINEDFSR ACEAIFRCHG KVVVMGMGKS  60
   61 GHIGCKIAAT FASTGTPAFF VHPGEASHGD LGMITPQDIV LAISNSGESN EILTLIPVLK 120
  121 RQKILLICMS SNPESTMGKA ADIHLCINVP QEACPLGLAP TTSTTATLVM GDALAVALLK 180
  181 ARGFTQEDFA LSHPGGALGR KLLLRISDIM HTGTEIPTVS PDASLRDALL EITRKSLGLT 240
  241 VICDDSMRIK GIFTDGDLRR VFDMGIDLNN AKIADVMTRG GIRVPPNILA VDALNLMESR 300
  301 HITALLVADG DQLLGVVHMH DMLRAGVV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.221849
Match:	1moqA
Description:	ISOMERASE DOMAIN OF GLUCOSAMINE 6-PHOSPHATE SYNTHASE COMPLEXED WITH GLUCOSAMINE 6-PHOSPHATE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
D-sedoheptulose 7-phosphate isomerase activity	2.51573700304958	bayes_pls_golite062009
catalytic activity	1.5278037255884	bayes_pls_golite062009
glucose-6-phosphate isomerase activity	1.27102475335512	bayes_pls_golite062009
glutamine-fructose-6-phosphate transaminase (isomerizing) activity	1.11549102314657	bayes_pls_golite062009
isomerase activity	0.875614547872629	bayes_pls_golite062009
intramolecular oxidoreductase activity, interconverting aldoses and ketoses	0.718035369881213	bayes_pls_golite062009
intramolecular oxidoreductase activity	0.543772038478781	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: