YRC Public Data Repository - Protein Structure Prediction

Protein:	YRAN_ECO5E
Organism:	Escherichia coli O157:H7 str. EC4115
Length:	131 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YRAN_ECO5E.

Description	E-value	Query Range	Subject Range
YRAN_SHISS - UPF0102 protein YraN OS=Shigella sonnei (strain Ss046) GN=yraN PE=3 SV=1 YRAN_ECO7I - UPF0102 protein YraN OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=yraN PE=3 SV=1 YRAN_ECOSM - UPF0102 protein YraN OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=yraN PE=3 SV=1	181.0	[0..1]	[131..1]
gi\|75260078, gi\|... - gi\|75260078\|ref\|ZP_00731356.1\| COG0792: Predicted endonuclease distantly related to archaeal Hollida... YRAN_SHIDS - UPF0102 protein YraN OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=yraN PE=3 SV=1 YRAN_ECO55 - UPF0102 protein YraN OS=Escherichia coli (strain 55989 / EAEC) GN=yraN PE=3 SV=1 YRAN_ECOSE - UPF0102 protein YraN OS=Escherichia coli (strain SE11) GN=yraN PE=3 SV=1	181.0	[0..1]	[131..1]
gi\|24114439, gi\|... - gi\|24114439\|ref\|NP_708949.1\| hypothetical protein SF3189 [Shigella flexneri 2a str. 301], gi\|2405361... gi\|30064488, gi\|... - gi\|30064488\|ref\|NP_838659.1\| hypothetical protein S3406 [Shigella flexneri 2a str. 2457T], gi\|300427... YRAN_SHIF8 - UPF0102 protein YraN OS=Shigella flexneri serotype 5b (strain 8401) GN=yraN PE=3 SV=1 YRAN_SHIFL - UPF0102 protein YraN OS=Shigella flexneri GN=yraN PE=3 SV=1	181.0	[0..1]	[131..1]
YRAN_ECO24 - UPF0102 protein YraN OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=yraN PE=3 SV=1	181.0	[0..1]	[131..1]
gi\|226899139, gi... - gi\|237706099\|ref\|ZP_04536580.1\| yraN [Escherichia sp. 3_2_53FAA], gi\|226899139\|gb\|EEH85398.1\| yraN [... gi\|227835268, gi... - gi\|227887872\|ref\|ZP_04005677.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783526... YRAN_ECOK1 - UPF0102 protein YraN OS=Escherichia coli O1:K1 / APEC GN=yraN PE=3 SV=1 YRAN_ECO45 - UPF0102 protein YraN OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=yraN PE=3 SV=1 YRAN_ECOL6 - UPF0102 protein yraN OS=Escherichia coli O6 GN=yraN PE=3 SV=1 YRAN_ECOL6 - UPF0102 protein YraN OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yraN PE=3 SV=... YRAN_ECOUT - UPF0102 protein YraN OS=Escherichia coli (strain UTI89 / UPEC) GN=yraN PE=3 SV=1	180.0	[0..1]	[131..1]
gi\|193067389, gi... - gi\|75239297\|ref\|ZP_00723268.1\| COG0792: Predicted endonuclease distantly related to archaeal Hollida...	179.0	[0..1]	[131..1]
YRAN_SHIB3 - UPF0102 protein YraN OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=yraN PE=3 SV=1 YRAN_SHIBS - UPF0102 protein YraN OS=Shigella boydii serotype 4 (strain Sb227) GN=yraN PE=3 SV=1	179.0	[0..1]	[131..1]
EG12779 - UPF0102 family protein / Function unknown, UPF0102 family gi\|194422282, gi... - gi\|83585789\|ref\|ZP_00924430.1\| COG0792: Predicted endonuclease distantly related to archaeal Hollida... gi\|188495707, gi... - gi\|75513363\|ref\|ZP_00735787.1\| COG0792: Predicted endonuclease distantly related to archaeal Hollida... gi\|89109913, gi\|... - gi\|89109913\|ref\|AP_003693.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... YRAN_ECODH - UPF0102 protein YraN OS=Escherichia coli (strain K12 / DH10B) GN=yraN PE=3 SV=1 gi\|124525944, gi... - gi\|124525944\|ref\|ZP_01697949.1\| protein of unknown function UPF0102 [Escherichia coli B], gi\|1245020... YRAN_ECOLC - UPF0102 protein YraN OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=yraN PE=3 SV=1 YRAN_ECOLI - UPF0102 protein yraN - Escherichia coli EG12779 - UPF0102 family protein / Function unknown, UPF0102 family YRAN_ECOBW - UPF0102 protein YraN OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=yraN PE=3 SV=1 gi\|242378693, gi... - gi\|251786420\|ref\|YP_003000724.1\| hypothetical protein B21_02966 [Escherichia coli BL21], gi\|24237869... gi\|254289842, gi... - gi\|254289842\|ref\|YP_003055590.1\| hypothetical protein ECD_03015 [Escherichia coli BL21(DE3)], gi\|253... gi\|226839937, gi... - gi\|254038313\|ref\|ZP_04872371.1\| yraN [Escherichia sp. 1_1_43], gi\|226839937\|gb\|EEH71958.1\| yraN [Esc... gi\|253974993, gi... - gi\|254163092\|ref\|YP_003046200.1\| hypothetical protein ECB_03015 [Escherichia coli B str. REL606], gi...	179.0	[0..1]	[131..1]
gi\|75228794, gi\|... - gi\|75228794\|ref\|ZP_00715403.1\| COG0792: Predicted endonuclease distantly related to archaeal Hollida...	178.0	[0..1]	[131..1]
YRAN_ECO27 - UPF0102 protein YraN OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=yraN PE=3 SV=1 sp\|B7UJ44\|YRAN_ECO27 - UPF0102 protein yraN OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=yraN PE=3 SV=1 gi\|191172162, gi... - gi\|75240827\|ref\|ZP_00724725.1\| COG0792: Predicted endonuclease distantly related to archaeal Hollida... YRAN_ECOL5 - UPF0102 protein YraN OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=yraN PE=3 SV=1	178.0	[0..1]	[131..1]

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Predicted Domain #1

Region A:
Residues: [1-131]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATVPTRSGS PRQLTTKQTG DAWEVQARRW LEGKGLRFVA ANVNERGGEI DLIMREGRTT  60
   61 VFVEVRYRRS ALYGGAAASV TRSKQHKLLQ TARLWLARHN GSFDTVDCRF DVVAFTGNEV 120
  121 EWIKDTFNDH S

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	4.03
Match:	2eo0A
Description:	No description for 2eo0A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits