YRC Public Data Repository - Protein Structure Prediction

Protein:	RS18_STREM
Organism:	Streptococcus equi subsp. zooepidemicus MGCS10565
Length:	79 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS18_STREM.

Description	E-value	Query Range	Subject Range
gi\|55737709, gi\|... - gb\|AAV63270.1\| 30S ribosomal protein S18 [Streptococcus thermophilus CNRZ1066], gb\|AAV61351.1\| 30S ... RS18_STRT2 - 30S ribosomal protein S18 OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=rpsR PE... RS18_STRTD - 30S ribosomal protein S18 OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=rpsR PE=3 S... RS18_STRT1 - 30S ribosomal protein S18 OS=Streptococcus thermophilus (strain CNRZ 1066) GN=rpsR PE=3 SV=1	118.0	[0..1]	[79..1]

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Predicted Domain #1

Region A:
Residues: [1-79]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQQRRGGFK RRKKVDFIAA NKIEYVDYKD TELLSRFVSE RGKILPRRVT GTSAKNQRKV  60
   61 TTAIKRARVM ALMPYVNED

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.69897
Match:	1vs5R
Description:	No description for 1vs5R was found.

Predicted functions:

Term	Confidence	Notes
structural molecule activity	0.36378695673226	bayes_pls_golite062009
structural constituent of ribosome	0.351838444516321	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: