YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|204323161, gi...
Organism:	Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433
Length:	63 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|204323161, gi....

Description	E-value	Query Range	Subject Range
gi\|21647733, gi\|... - gi\|21674539\|ref\|NP_662604.1\| hypothetical protein CT1723 [Chlorobium tepidum TLS], gi\|21647733\|gb\|AA...	91.0	[0..3]	[63..41]
gi\|49082368 - gi\|49082368\|gb\|AAT50584.1\| PA5306 [synthetic construct]	90.0	[0..1]	[63..1]
gi\|226945579, gi... - gi\|67159212\|ref\|ZP_00419888.1\| conserved hypothetical protein [Azotobacter vinelandii AvOP], gi\|6708... gi\|67159212 - gi\|67159212\|ref\|ZP_00419888.1\| conserved hypothetical protein [Azotobacter vinelandii AvOP]	89.0	[0..1]	[63..1]
gi\|32044687, gi\|... - gi\|32044687\|ref\|ZP_00141788.1\| hypothetical protein Paer03005704 [Pseudomonas aeruginosa UCBPP-PA14]... gi\|15600499, gi\|... - gi\|9951622\|gb\|AAG08691.1\|AE004943_7 conserved hypothetical protein [Pseudomonas aeruginosa PAO1], gi... gi\|218894409, gi... - gi\|218894409\|ref\|YP_002443279.1\| putative lipoprotein [Pseudomonas aeruginosa LESB58], gi\|218774638\|... gi\|11348324 - pir\|\|B82983 conserved hypothetical protein PA5306 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|94417792, gi\|... - gi\|94417792\|ref\|ZP_01297609.1\| hypothetical protein PaerP_01000574 [Pseudomonas aeruginosa PA7], gi\|... gi\|107104409 - gi\|107104409\|ref\|ZP_01368327.1\| hypothetical protein PaerPA_01005485 [Pseudomonas aeruginosa PACS2] gi\|126169930, gi... - gi\|84317825\|ref\|ZP_00966260.1\| hypothetical protein PaerC_01004284 [Pseudomonas aeruginosa C3719], g... gi\|194554793, gi... - gi\|84323987\|ref\|ZP_00972052.1\| hypothetical protein Paer2_01004694 [Pseudomonas aeruginosa 2192], gi...	89.0	[0..1]	[63..1]
gi\|110615302, gi... - gi\|110805754\|ref\|YP_689274.1\| hypothetical protein SFV_1807 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|124501058, gi... - gi\|124527894\|ref\|ZP_01699283.1\| conserved hypothetical protein [Escherichia coli B], gi\|124501058\|gb... gi\|91210648, gi\|... - gi\|91210648\|ref\|YP_540634.1\| hypothetical protein UTI89_C1625 [Escherichia coli UTI89], gi\|91072222\|... gi\|110641588, gi... - gi\|110641588\|ref\|YP_669318.1\| hypothetical protein ECP_1408 [Escherichia coli 536], gi\|110343180\|gb\|... EG14298 - lipoprotein / Novel verified lipoprotein, function unknown gi\|30062873, gi\|... - gi\|30062873\|ref\|NP_837044.1\| hypothetical protein S1457 [Shigella flexneri 2a str. 2457T], gi\|300411... EG14298 - lipoprotein / Novel verified lipoprotein, function unknown gi\|89108229, gi\|... - gi\|89108229\|ref\|AP_002009.1\| predicted lipoprotein [Escherichia coli str. K-12 substr. W3110], gi\|85... gi\|75515028, gi\|... - gi\|75515028\|ref\|ZP_00737232.1\| hypothetical protein Ecol5_01001039 [Escherichia coli 53638], gi\|1884... gi\|74312245, gi\|... - gi\|74312245\|ref\|YP_310664.1\| hypothetical protein SSON_1742 [Shigella sonnei Ss046], gi\|73855722\|gb\|... gi\|227886208, gi... - gi\|227886208\|ref\|ZP_04004013.1\| possible lipoprotein [Escherichia coli 83972], gi\|227836412\|gb\|EEJ46... gi\|226900141, gi... - gi\|237705384\|ref\|ZP_04535865.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|238862624, gi... - gi\|238900612\|ref\|YP_002926408.1\| putative lipoprotein [Escherichia coli BW2952], gi\|238862624\|gb\|ACR... gi\|242377154, gi... - gi\|251784881\|ref\|YP_002999185.1\| hypothetical protein B21_01367 [Escherichia coli BL21], gi\|24237715... gi\|194419835, gi... - gi\|83571035\|ref\|ZP_00922477.1\| hypothetical protein Sdys1_01000868 [Shigella dysenteriae 1012], gi\|1... gi\|253773624, gi... - gi\|254288261\|ref\|YP_003054009.1\| predicted lipoprotein [Escherichia coli BL21(DE3)], gi\|253977568\|gb... gi\|83587755, gi\|... - gi\|83587755\|ref\|ZP_00926381.1\| hypothetical protein Ecol1_01000782 [Escherichia coli 101-1], gi\|1944... gi\|253973357, gi... - gi\|254161456\|ref\|YP_003044564.1\| predicted lipoprotein [Escherichia coli B str. REL606], gi\|25397335... gi\|24113165, gi\|... - gi\|24113165\|ref\|NP_707675.1\| hypothetical protein SF1816 [Shigella flexneri 2a str. 301], gi\|2405215... gi\|191170958, gi... - gi\|75242150\|ref\|ZP_00725944.1\| hypothetical protein EcolF_01001095 [Escherichia coli F11], gi\|191170... YNBE_ECOL6 - Uncharacterized protein YnbE OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ynbE ... gi\|75259507, gi\|... - gi\|75259507\|ref\|ZP_00730826.1\| hypothetical protein EcolE2_01000942 [Escherichia coli E22], gi\|19306... gi\|157160864, gi... - gi\|75195499\|ref\|ZP_00705569.1\| hypothetical protein EcolH_01001293 [Escherichia coli HS], gi\|1571608... gi\|75212794, gi\|... - gi\|75212794\|ref\|ZP_00712792.1\| hypothetical protein EcolB_01000175 [Escherichia coli B171], gi\|19442... gi\|218700076, gi... - gi\|218700076\|ref\|YP_002407705.1\| putative lipoprotein [Escherichia coli IAI39], gi\|218370062\|emb\|CAR... gi\|218704872, gi... - gi\|218704872\|ref\|YP_002412391.1\| putative lipoprotein [Escherichia coli UMN026], gi\|218431969\|emb\|CA... YNBE_ECOLI - Hypothetical protein ynbE - Escherichia coli gi\|170020282, gi... - gi\|170020282\|ref\|YP_001725236.1\| hypothetical protein EcolC_2273 [Escherichia coli ATCC 8739], gi\|16... gi\|170081060, gi... - gi\|170081060\|ref\|YP_001730380.1\| lipoprotein [Escherichia coli str. K-12 substr. DH10B], gi\|16988889... YNBE_SHIFL - Uncharacterized protein YnbE OS=Shigella flexneri GN=ynbE PE=4 SV=1 gi\|170517543, gi... - gi\|170679825\|ref\|YP_001743823.1\| putative lipoprotein [Escherichia coli SMS-3-5], gi\|170517543\|gb\|AC... gi\|215264718, gi... - gi\|215486646\|ref\|YP_002329077.1\| predicted lipoprotein [Escherichia coli O127:H6 str. E2348/69], gi\|... gi\|218365108, gi... - gi\|218558339\|ref\|YP_002391252.1\| putative lipoprotein [Escherichia coli S88], gi\|218365108\|emb\|CAR02... YNBE_ECOL6 - Uncharacterized protein ynbE OS=Escherichia coli O6 GN=ynbE PE=4 SV=1 gi\|218426906, gi... - gi\|218689342\|ref\|YP_002397554.1\| putative lipoprotein [Escherichia coli ED1a], gi\|218426906\|emb\|CAR0... gi\|218694928, gi... - gi\|218694928\|ref\|YP_002402595.1\| putative lipoprotein [Escherichia coli 55989], gi\|218351660\|emb\|CAU...	83.0	[0..3]	[63..1]
gi\|209771270, gi... - pir\|\|F85739 hypothetical protein ynbE [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|15801746, gi\|... - gi\|15801746\|ref\|NP_287764.1\| hypothetical protein Z2327 [Escherichia coli O157:H7 EDL933], gi\|125153... gi\|13361470, gi\|... - gi\|15831258\|ref\|NP_310031.1\| hypothetical protein ECs2004 [Escherichia coli O157:H7], gi\|13361470\|db... gi\|82776747, gi\|... - gi\|82776747\|ref\|YP_403096.1\| hypothetical protein SDY_1466 [Shigella dysenteriae Sd197], gi\|81240895... gi\|208816052, gi... - gi\|208816052\|ref\|ZP_03257231.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4045], gi\|2087... gi\|13361470, gi\|... - gi\|15831258\|ref\|NP_310031.1\| hypothetical protein ECs2004 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|208724339, gi... - gi\|208810833\|ref\|ZP_03252666.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4206], gi\|2087... gi\|195938019 - gi\|195938019\|ref\|ZP_03083401.1\| hypothetical protein EscherichcoliO157_16567 [Escherichia coli O157:... gi\|168799669, gi... - gi\|189377904\|gb\|EDU96320.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC508], gi\|168799669... gi\|254592346, gi... - gi\|254792946\|ref\|YP_003077783.1\| lipoprotein [Escherichia coli O157:H7 str. TW14359], gi\|254592346\|g... gi\|217329426, gi... - gi\|217329426\|ref\|ZP_03445506.1\| putative lipoprotein [Escherichia coli O157:H7 str. TW14588], gi\|217... gi\|209161869, gi... - gi\|209400469\|ref\|YP_002270412.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4115], gi\|209... gi\|208741085, gi... - gi\|208820962\|ref\|ZP_03261282.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4042], gi\|2087... gi\|189366669, gi... - gi\|189366669\|gb\|EDU85085.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4501], gi\|16876311... gi\|168756040, gi... - gi\|189356833\|gb\|EDU75252.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4401], gi\|16875604... gi\|188016552, gi... - gi\|188016552\|gb\|EDU54674.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4113], gi\|16874900... gi\|168788316, gi... - gi\|189371847\|gb\|EDU90263.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC869], gi\|168788316... gi\|168782889, gi... - gi\|188999725\|gb\|EDU68711.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4076], gi\|16878288... gi\|187769332, gi... - gi\|187769332\|gb\|EDU33176.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4196], gi\|16877518... gi\|189361594, gi... - gi\|189361594\|gb\|EDU80013.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4486], gi\|16876944...	82.0	[0..3]	[63..1]
gi\|209911917, gi... - gi\|209918658\|ref\|YP_002292742.1\| putative lipoprotein [Escherichia coli SE11], gi\|209911917\|dbj\|BAG7... gi\|218360680, gi... - gi\|218553912\|ref\|YP_002386825.1\| putative lipoprotein [Escherichia coli IAI1], gi\|218360680\|emb\|CAQ9... gi\|192959562, gi... - gi\|75239986\|ref\|ZP_00723947.1\| hypothetical protein EcolE1_01000235 [Escherichia coli E110019], gi\|1... gi\|190904952, gi... - gi\|75231850\|ref\|ZP_00718191.1\| hypothetical protein EcolB7_01000166 [Escherichia coli B7A], gi\|19116... gi\|75190439, gi\|... - gi\|75190439\|ref\|ZP_00703706.1\| hypothetical protein EcolE_01003743 [Escherichia coli E24377A], gi\|15...	82.0	[0..3]	[63..1]
gi\|187428537, gi... - gi\|75178652\|ref\|ZP_00698698.1\| hypothetical protein SboyB_01001581 [Shigella boydii BS512], gi\|18773... gi\|82544170, gi\|... - gi\|82544170\|ref\|YP_408117.1\| hypothetical protein SBO_1684 [Shigella boydii Sb227], gi\|81245581\|gb\|A...	81.0	[0..3]	[63..1]
gi\|56460354, gi\|... - gi\|56460354\|ref\|YP_155635.1\| outer membrane lipoprotein [Idiomarina loihiensis L2TR], gi\|56179364\|gb...	78.0	[0..3]	[63..1]
gi\|21958834, gi\|... - gi\|22125898\|ref\|NP_669321.1\| hypothetical protein y2006 [Yersinia pestis KIM], gi\|21958834\|gb\|AAM855... gi\|167056097, gi... - gi\|167424910\|ref\|ZP_02316663.1\| putative lipoprotein [Yersinia pestis biovar Mediaevalis str. K19730... gi\|166959006, gi... - gi\|167422194\|ref\|ZP_02313947.1\| putative lipoprotein [Yersinia pestis biovar Orientalis str. MG05-10... gi\|167400788, gi... - gi\|167400788\|ref\|ZP_02306294.1\| putative lipoprotein [Yersinia pestis biovar Antiqua str. UG05-0454]... gi\|166207665, gi... - gi\|166210485\|ref\|ZP_02236520.1\| putative lipoprotein [Yersinia pestis biovar Antiqua str. B42003004]... gi\|166010748, gi... - gi\|166010748\|ref\|ZP_02231646.1\| putative lipoprotein [Yersinia pestis biovar Antiqua str. E1979001],... gi\|165920911, gi... - gi\|165927243\|ref\|ZP_02223075.1\| putative lipoprotein [Yersinia pestis biovar Orientalis str. F199101... gi\|162354707, gi... - gi\|162421892\|ref\|YP_001606662.1\| putative lipoprotein [Yersinia pestis Angola], gi\|162354707\|gb\|ABX8...	77.0	[0..7]	[63..47]

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Predicted Domain #1

Region A:
Residues: [1-63]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKMSIAMLSA LASFIVVGCT PRIEVAAPEQ PITINMNVKI EHEIHIKVDK DVEELLKSRS  60
   61 DLF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits