YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213980158
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. AG3
Length:	193 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213980158.

Description	E-value	Query Range	Subject Range
DCD_YERPA - Deoxycytidine triphosphate deaminase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=dcd PE=3 SV=... DCD_YERPN - Deoxycytidine triphosphate deaminase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=dcd PE=3 SV... gi\|167056813, gi... - gi\|167423964\|ref\|ZP_02315717.1\| deoxycytidine triphosphate deaminase [Yersinia pestis biovar Mediaev... gi\|167467521 - gi\|167467521\|ref\|ZP_02332225.1\| deoxycytidine triphosphate deaminase [Yersinia pestis FV-1] DCD_YERPY - Deoxycytidine triphosphate deaminase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=d... DCD_YERPB - Deoxycytidine triphosphate deaminase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=dc... gi\|166009184, gi... - gi\|166009184\|ref\|ZP_02230082.1\| deoxycytidine triphosphate deaminase [Yersinia pestis biovar Antiqua... DCD_YERPE - Deoxycytidine triphosphate deaminase OS=Yersinia pestis GN=dcd PE=3 SV=1 gi\|166207321, gi... - gi\|166211550\|ref\|ZP_02237585.1\| deoxycytidine triphosphate deaminase [Yersinia pestis biovar Antiqua... gi\|167050229, gi... - gi\|167400280\|ref\|ZP_02305793.1\| deoxycytidine triphosphate deaminase [Yersinia pestis biovar Antiqua... DCD_YERPS - Deoxycytidine triphosphate deaminase OS=Yersinia pseudotuberculosis GN=dcd PE=3 SV=1 gi\|167421824, gi... - gi\|167421824\|ref\|ZP_02313577.1\| deoxycytidine triphosphate deaminase [Yersinia pestis biovar Orienta... gi\|161511408 - gi\|161511408\|ref\|NP_992778.2\| deoxycytidine triphosphate deaminase [Yersinia pestis biovar Microtus ... DCD_YERPG - Deoxycytidine triphosphate deaminase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=dcd PE=3 SV=1 gi\|165923376, gi... - gi\|165924316\|ref\|ZP_02220148.1\| deoxycytidine triphosphate deaminase [Yersinia pestis biovar Orienta... gi\|165939553, gi... - gi\|165939553\|ref\|ZP_02228098.1\| deoxycytidine triphosphate deaminase [Yersinia pestis biovar Orienta... gi\|161484779 - gi\|161484779\|ref\|NP_669947.2\| deoxycytidine triphosphate deaminase [Yersinia pestis KIM] DCD_YERPS - Deoxycytidine triphosphate deaminase OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=d... DCD_YERP3 - Deoxycytidine triphosphate deaminase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) ... gi\|115347277, gi... - gi\|218928666\|ref\|YP_002346541.1\| deoxycytidine triphosphate deaminase [Yersinia pestis CO92], gi\|161... gi\|149366446, gi... - gi\|149366446\|ref\|ZP_01888480.1\| deoxycytidine triphosphate deaminase [Yersinia pestis CA88-4125], gi... DCD_YERPP - Deoxycytidine triphosphate deaminase OS=Yersinia pestis (strain Pestoides F) GN=dcd PE=3 SV=1 gi\|229697872, gi... - gi\|229841506\|ref\|ZP_04461665.1\| 2'-deoxycytidine 5'-triphosphate deaminase [Yersinia pestis biovar O... gi\|229689225, gi... - gi\|229843617\|ref\|ZP_04463760.1\| 2'-deoxycytidine 5'-triphosphate deaminase [Yersinia pestis biovar O... gi\|229703679, gi... - gi\|229894281\|ref\|ZP_04509464.1\| 2'-deoxycytidine 5'-triphosphate deaminase [Yersinia pestis Pestoide...	6.0E-57	[1..193]	[1..193]
gi\|77628756, gi\|... - gi\|77628756\|ref\|ZP_00791342.1\| COG0717: Deoxycytidine deaminase [Yersinia pseudotuberculosis IP 3175...	7.0E-57	[1..193]	[6..198]
gi\|238789831, gi... - gi\|77975895\|ref\|ZP_00831429.1\| COG0717: Deoxycytidine deaminase [Yersinia frederiksenii ATCC 33641],...	9.0E-57	[1..193]	[1..193]
gi\|77962473 - gi\|77962473\|ref\|ZP_00826293.1\| COG0717: Deoxycytidine deaminase [Yersinia mollaretii ATCC 43969]	1.0E-56	[1..193]	[1..193]
gi\|89102634 - gi\|89102634\|ref\|ZP_01175253.1\| COG0717: Deoxycytidine deaminase [Yersinia pestis biovar Orientalis s... gi\|21959524, gi\|... - gi\|22126524\|ref\|NP_669947.1\| deoxycytidine triphosphate deaminase [Yersinia pestis KIM], gi\|21959524... gi\|77636277 - gi\|77636277\|ref\|ZP_00798352.1\| COG0717: Deoxycytidine deaminase [Yersinia pestis Angola] gi\|45436099, gi\|... - gi\|45441239\|ref\|NP_992778.1\| deoxycytidine triphosphate deaminase [Yersinia pestis biovar Microtus s...	2.0E-56	[1..193]	[10..202]
gi\|238713650, gi... - gi\|77959269\|ref\|ZP_00823290.1\| COG0717: Deoxycytidine deaminase [Yersinia bercovieri ATCC 43970], gi...	2.0E-56	[1..193]	[6..198]
gi\|238793467, gi... - gi\|77978855\|ref\|ZP_00834279.1\| COG0717: Deoxycytidine deaminase [Yersinia intermedia ATCC 29909], gi...	1.0E-55	[1..193]	[6..198]
DCD_PECAS - Deoxycytidine triphosphate deaminase OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672... DCD_ERWCT - Deoxycytidine triphosphate deaminase OS=Erwinia carotovora subsp. atroseptica GN=dcd PE=3 SV=1	2.0E-55	[1..193]	[1..193]
gi\|238895637, gi... - gi\|238895637\|ref\|YP_002920372.1\| deoxycytidine triphosphate deaminase [Klebsiella pneumoniae NTUH-K2... gi\|57753907 - gi\|57753907\|dbj\|BAD86762.1\| deoxycytidine triphosphate deaminase [Klebsiella pneumoniae] DCD_KLEP3 - Deoxycytidine triphosphate deaminase OS=Klebsiella pneumoniae (strain 342) GN=dcd PE=3 SV=1 DCD_KLEP7 - Deoxycytidine triphosphate deaminase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 ...	3.0E-55	[1..193]	[1..193]
gi\|30063514, gi\|... - gi\|30063514\|ref\|NP_837685.1\| deoxycytidine triphosphate deaminase [Shigella flexneri 2a str. 2457T],... DCD_SHIBS - Deoxycytidine triphosphate deaminase OS=Shigella boydii serotype 4 (strain Sb227) GN=dcd PE=3 SV=1 DCD_SHISS - Deoxycytidine triphosphate deaminase OS=Shigella sonnei (strain Ss046) GN=dcd PE=3 SV=1 gi\|24052477, gi\|... - gi\|24113449\|ref\|NP_707959.1\| deoxycytidine triphosphate deaminase [Shigella flexneri 2a str. 301], g... DCD_ECOLC - Deoxycytidine triphosphate deaminase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=d... gi\|190901095, gi... - gi\|75227910\|ref\|ZP_00714614.1\| COG0717: Deoxycytidine deaminase [Escherichia coli B7A], gi\|191168856... gi\|75210006, gi\|... - gi\|75210006\|ref\|ZP_00710189.1\| COG0717: Deoxycytidine deaminase [Escherichia coli B171], gi\|19442874... DCD_ECOHS - Deoxycytidine triphosphate deaminase OS=Escherichia coli O9:H4 (strain HS) GN=dcd PE=3 SV=1 DCD_ECO24 - Deoxycytidine triphosphate deaminase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=dcd PE=... gi\|188493265, gi... - gi\|75514095\|ref\|ZP_00736425.1\| COG0717: Deoxycytidine deaminase [Escherichia coli 53638], gi\|1884932... gi\|192931493, gi... - gi\|75259203\|ref\|ZP_00730551.1\| COG0717: Deoxycytidine deaminase [Escherichia coli E22], gi\|193062850... gi\|190909427, gi... - gi\|75242887\|ref\|ZP_00726593.1\| COG0717: Deoxycytidine deaminase [Escherichia coli F11], gi\|191169911... gi\|75236261, gi\|... - gi\|75236261\|ref\|ZP_00720370.1\| COG0717: Deoxycytidine deaminase [Escherichia coli E110019], gi\|19306... DCD_SHIB3 - Deoxycytidine triphosphate deaminase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=... gi\|194431494, gi... - gi\|83571229\|ref\|ZP_00922670.1\| COG0717: Deoxycytidine deaminase [Shigella dysenteriae 1012], gi\|1944... DCD_SHIF8 - Deoxycytidine triphosphate deaminase OS=Shigella flexneri serotype 5b (strain 8401) GN=dcd PE=3 SV=1 DCD_ECOL5 - Deoxycytidine triphosphate deaminase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=dcd PE=3 ... sp\|B7UTA3\|DCD_ECO27 - Deoxycytidine triphosphate deaminase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=dcd PE=... DCD_SHIFL - Deoxycytidine triphosphate deaminase OS=Shigella flexneri GN=dcd PE=3 SV=1 gi\|124500385, gi... - gi\|124528698\|ref\|ZP_01699956.1\| deoxycytidine triphosphate deaminase [Escherichia coli B], gi\|124500... DCD_ECO55 - Deoxycytidine triphosphate deaminase OS=Escherichia coli (strain 55989 / EAEC) GN=dcd PE=3 SV=1 gi\|168986333, gi... - gi\|168986390\|dbj\|BAG11929.1\| 2'-deoxycytidine 5'-triphosphate deaminase [Escherichia coli O55:H7], g... gi\|168986449 - gi\|168986449\|dbj\|BAG11987.1\| 2'-deoxycytidine 5'-triphosphate deaminase [Escherichia coli O55:H6] DCD_ECOSE - Deoxycytidine triphosphate deaminase OS=Escherichia coli (strain SE11) GN=dcd PE=3 SV=1 DCD_ECO27 - Deoxycytidine triphosphate deaminase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=dcd PE=... DCD_ESCF3 - Deoxycytidine triphosphate deaminase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC ... DCD_ECO8A - Deoxycytidine triphosphate deaminase OS=Escherichia coli O8 (strain IAI1) GN=dcd PE=3 SV=1 DCD_ECO81 - Deoxycytidine triphosphate deaminase OS=Escherichia coli O81 (strain ED1a) GN=dcd PE=3 SV=1	3.0E-54	[1..193]	[1..193]

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Predicted Domain #1

Region A:
Residues: [1-193]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLCDRDIEA WLDEGRLSIT PRPPVERING ATVDVRLGNK FRTFRGHTAA FIDLSGPKDE  60
   61 VSAALDRVMS DEIVLPDGEA FYLHPGELAL AVTFESVTLP PDLVGWLDGR SSLARLGLMV 120
  121 HVTAHRIDPG WSGCIVLEFY NSGKLPLALR PGMLIGALSF EPLSGPAARP YNRRQDAKYR 180
  181 DQQGAVASRI DKD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.154902
Match:	1xs1A
Description:	dCTP deaminase from Escherichia coli in complex with dUTP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nucleoside-triphosphate diphosphatase activity	4.9446386219436	bayes_pls_golite062009
dUTP diphosphatase activity	4.92207428503442	bayes_pls_golite062009
dCTP deaminase activity	4.60235481565849	bayes_pls_golite062009
catalytic activity	1.71668532866244	bayes_pls_golite062009
hydrolase activity	1.63889579722321	bayes_pls_golite062009
deaminase activity	0.569997469329081	bayes_pls_golite062009
peroxisome proliferator activated receptor binding	0.383360698341246	bayes_pls_golite062009
binding	0.15452287545479	bayes_pls_golite062009
pyrimidine deoxyribonucleotide binding	0.0405835740740832	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: