YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213646814
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. J185
Length:	150 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213646814.

Description	E-value	Query Range	Subject Range
gi\|62130526, gi\|... - gi\|62182893\|ref\|YP_219310.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serov... gi\|224586292, gi... - gi\|224586292\|ref\|YP_002640091.1\| hypothetical protein SPC_4601 [Salmonella enterica subsp. enterica ... gi\|168464651, gi... - gi\|195632851\|gb\|EDX51305.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serova... gi\|161617761, gi... - gi\|161617761\|ref\|YP_001591727.1\| hypothetical protein SPAB_05624 [Salmonella enterica subsp. enteric...	2.0E-55	[1..150]	[1..150]
lcl\|NC_016856.1_... - [gene=yjgK] [protein=putative cytoplasmic protein] [protein_id=YP_005240792.1] [location=4724054..47... gi\|16767713, gi\|... - gi\|16767713\|ref\|NP_463328.1\| putative cytoplasmic protein [Salmonella typhimurium LT2], gi\|16423032\|... gi\|205330395, gi... - gi\|205330395\|gb\|EDZ17159.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serova...	1.0E-54	[1..150]	[1..150]
gi\|197365162, gi... - gi\|197365162\|ref\|YP_002144799.1\| hypothetical protein SSPA3965 [Salmonella enterica subsp. enterica ... gi\|56130496, gi\|... - gi\|56416239\|ref\|YP_153314.1\| hypothetical protein SPA4268 [Salmonella enterica subsp. enterica serov...	4.0E-54	[1..150]	[1..150]
gi\|81243461, gi\|... - gi\|82779313\|ref\|YP_405662.1\| hypothetical protein SDY_4270 [Shigella dysenteriae Sd197], gi\|81243461...	2.0E-51	[1..150]	[4..153]
gi\|75229620, gi\|... - gi\|75229620\|ref\|ZP_00716159.1\| COG2731: Beta-galactosidase, beta subunit [Escherichia coli B7A], gi\|...	3.0E-51	[1..150]	[1..150]
gi\|75212196, gi\|... - gi\|75212196\|ref\|ZP_00712236.1\| COG2731: Beta-galactosidase, beta subunit [Escherichia coli B171], gi... gi\|75179350, gi\|... - gi\|75179350\|ref\|ZP_00699354.1\| COG2731: Beta-galactosidase, beta subunit [Shigella boydii BS512], gi...	3.0E-51	[1..150]	[1..150]
gi\|38704249 - gi\|38704249\|ref\|NP_313256.2\| hypothetical protein ECs5229 [Escherichia coli O157:H7] gi\|75235442, gi\|... - gi\|75235442\|ref\|ZP_00719650.1\| COG2731: Beta-galactosidase, beta subunit [Escherichia coli E110019],... gi\|157077271, gi... - gi\|75188963\|ref\|ZP_00702230.1\| COG2731: Beta-galactosidase, beta subunit [Escherichia coli E24377A],... gi\|124500753, gi... - gi\|124528311\|ref\|ZP_01699635.1\| conserved hypothetical protein 22 [Escherichia coli B], gi\|124500753... gi\|75515486, gi\|... - gi\|75515486\|ref\|ZP_00737643.1\| COG2731: Beta-galactosidase, beta subunit [Escherichia coli 53638], g... gi\|192930615, gi... - gi\|75258351\|ref\|ZP_00729782.1\| COG2731: Beta-galactosidase, beta subunit [Escherichia coli E22], gi\|... gi\|188014806, gi... - gi\|188014806\|gb\|EDU52928.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|189357928, gi... - gi\|189357928\|gb\|EDU76347.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|168774028, gi... - gi\|187770229\|gb\|EDU34073.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|168782777, gi... - gi\|188999803\|gb\|EDU68789.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|189368954, gi... - gi\|189368954\|gb\|EDU87370.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|189363899, gi... - gi\|189363899\|gb\|EDU82318.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|38704249 - gi\|38704249\|ref\|NP_313256.2\| hypothetical protein ECs5229 [Escherichia coli O157:H7 str. Sakai] gi\|83586722, gi\|... - gi\|83586722\|ref\|ZP_00925354.1\| COG2731: Beta-galactosidase, beta subunit [Escherichia coli 101-1], g... gi\|218363569, gi... - gi\|218556800\|ref\|YP_002389714.1\| hypothetical protein ECIAI1_4481 [Escherichia coli IAI1], gi\|218363... gi\|218698001, gi... - gi\|218698001\|ref\|YP_002405668.1\| hypothetical protein EC55989_4809 [Escherichia coli 55989], gi\|2183... gi\|209915007, gi... - gi\|209921748\|ref\|YP_002295832.1\| hypothetical protein ECSE_4557 [Escherichia coli SE11], gi\|20991500... gi\|217321735, gi... - gi\|217325514\|ref\|ZP_03441598.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|218434956, gi... - gi\|218707859\|ref\|YP_002415378.1\| hypothetical protein ECUMN_4782 [Escherichia coli UMN026], gi\|21843... gi\|254796272, gi... - gi\|254796272\|ref\|YP_003081109.1\| hypothetical protein ECSP_5353 [Escherichia coli O157:H7 str. TW143... gi\|170021739, gi... - gi\|170021739\|ref\|YP_001726693.1\| hypothetical protein EcolC_3761 [Escherichia coli ATCC 8739], gi\|16... gi\|195937277 - gi\|195937277\|ref\|ZP_03082659.1\| hypothetical protein EscherichcoliO157_12630 [Escherichia coli O157:... gi\|189374781, gi... - gi\|189374781\|gb\|EDU93197.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|189379558, gi... - gi\|189379558\|gb\|EDU97974.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|208739463, gi... - gi\|208819340\|ref\|ZP_03259660.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|209399615, gi... - gi\|209399615\|ref\|YP_002273796.1\| hypothetical protein ECH74115_5773 [Escherichia coli O157:H7 str. E... gi\|208726292, gi... - gi\|208806491\|ref\|ZP_03248828.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|208813165, gi... - gi\|208813165\|ref\|ZP_03254494.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045...	3.0E-51	[1..150]	[1..150]
gi\|30065461, gi\|... - gi\|30065461\|ref\|NP_839632.1\| hypothetical protein S4500 [Shigella flexneri 2a str. 2457T], gi\|300437... gi\|238860576, gi... - gi\|238903353\|ref\|YP_002929149.1\| hypothetical protein BWG_3958 [Escherichia coli BW2952], gi\|2388605... gi\|85676999, gi\|... - gi\|89110968\|ref\|AP_004748.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|56480554, gi\|... - gi\|56480554\|ref\|NP_709950.2\| hypothetical protein SF4239 [Shigella flexneri 2a str. 301], gi\|5638410... TABA_SHIFL - Toxin-antitoxin biofilm protein TabA homolog OS=Shigella flexneri GN=tabA PE=3 SV=1 gi\|170083691, gi... - gi\|170083691\|ref\|YP_001733011.1\| hypothetical protein ECDH10B_4445 [Escherichia coli str. K-12 subst... EG12530 - biofilm modulator regulated by toxins; DUF386 family protein, cupin superfamily protein / Biofilm mo... gi\|110808010, gi... - gi\|110808010\|ref\|YP_691530.1\| hypothetical protein SFV_4243 [Shigella flexneri 5 str. 8401], gi\|1106... EG12530 - biofilm modulator regulated by toxins; DUF386 family protein, cupin superfamily protein / Biofilm mo... YJGK_ECOLI - Protein yjgK - Escherichia coli	4.0E-51	[1..150]	[1..150]
gi\|83569378, gi\|... - gi\|83569378\|ref\|ZP_00920832.1\| COG2731: Beta-galactosidase, beta subunit [Shigella dysenteriae 1012]...	4.0E-51	[1..150]	[1..150]
gi\|81247913, gi\|... - gi\|82546502\|ref\|YP_410449.1\| hypothetical protein SBO_4195 [Shigella boydii Sb227], gi\|81247913\|gb\|A...	5.0E-51	[1..150]	[4..153]

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Predicted Domain #1

Region A:
Residues: [1-150]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVGNIEHLE AWLPTALRQA IEHVNAHVTA TTAPGKYDID GDRLFYMISE NMTEPGESRS  60
   61 AEYHARYLDI QIVLQGQEGM AFSTRPAGTP HTDWLADKDI AFLPTSVDEK TVVLNEGDFV 120
  121 VFYPGEVHKP LCAVGEPARV RKAVVKMLMA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.69897
Match:	1jopA
Description:	Hypothetical protein HI0227
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.515503587188715	bayes_pls_golite062009
catalytic activity	0.154892236593256	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: