YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213977749
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. AG3
Length:	164 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213977749.

Description	E-value	Query Range	Subject Range
gi\|2120006, gi\|4... - gi\|407916\|gb\|AAA75467.1\| Lrp, pir\|\|S59993 transcription regulator lrp, leucine-responsive - Salmonel... gi\|407916\|gb\|AAA... - Lrp	3.0E-42	[1..164]	[1..164]
gi\|110641089, gi... - gi\|110641089\|ref\|YP_668819.1\| leucine-responsive transcriptional regulator [Escherichia coli 536], g... gi\|124501636, gi... - gi\|124526942\|ref\|ZP_01698824.1\| transcriptional regulator, AsnC family [Escherichia coli B], gi\|1245... gi\|227838896, gi... - gi\|227884144\|ref\|ZP_04001949.1\| Lrp family transcriptional regulator [Escherichia coli 83972], gi\|22...	4.0E-42	[1..164]	[18..181]
LRP_SALTY - Leucine-responsive regulatory protein OS=Salmonella typhimurium GN=lrp PE=3 SV=2 lcl\|NC_016856.1_... - [gene=lrp] [protein=leucine-responsive transcriptional regulator] [protein_id=YP_005236673.1] [locat... gi\|238893950, gi... - gi\|238893950\|ref\|YP_002918684.1\| leucine-responsive regulatory protein [Klebsiella pneumoniae NTUH-K... gi\|238913434 - gi\|238913434\|ref\|ZP_04657271.1\| leucine-responsive transcriptional regulator [Salmonella enterica su... gi\|62127116, gi\|... - gi\|62179483\|ref\|YP_215900.1\| leucine-responsive transcriptional regulator [Salmonella enterica subsp... LRP_SALTY - Leucine-responsive regulatory protein OS=Salmonella typhimurium GN=lrp PE=3 SV=2 LRP_SALTY - Leucine-responsive regulatory protein OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720... gi\|56413989, gi\|... - gi\|56413989\|ref\|YP_151064.1\| leucine-responsive transcriptional regulator [Salmonella enterica subsp... LRP_KLEAE - Leucine-responsive regulatory protein OS=Klebsiella aerogenes GN=lrp PE=3 SV=2 gi\|283784711\|ref... - leucine-responsive regulatory protein [Citrobacter rodentium ICC168] gi\|168236868, gi... - gi\|197290107\|gb\|EDY29464.1\| leucine responsive regulatory protein [Salmonella enterica subsp. enteri... gi\|168230852, gi... - gi\|205334879\|gb\|EDZ21643.1\| leucine responsive regulatory protein [Salmonella enterica subsp. enteri... gi\|167994700, gi... - gi\|205327470\|gb\|EDZ14234.1\| leucine responsive regulatory protein [Salmonella enterica subsp. enteri... gi\|205324513, gi... - gi\|205324513\|gb\|EDZ12352.1\| leucine responsive regulatory protein [Salmonella enterica subsp. enteri... gi\|205340733, gi... - gi\|205340733\|gb\|EDZ27497.1\| leucine responsive regulatory protein [Salmonella enterica subsp. enteri... gi\|195630989, gi... - gi\|195630989\|gb\|EDX49575.1\| leucine responsive regulatory protein [Salmonella enterica subsp. enteri... gi\|205347798, gi... - gi\|205347798\|gb\|EDZ34429.1\| leucine responsive regulatory protein [Salmonella enterica subsp. enteri... gi\|168240809, gi... - gi\|205340193\|gb\|EDZ26957.1\| leucine responsive regulatory protein [Salmonella enterica subsp. enteri... gi\|161614811, gi... - gi\|161614811\|ref\|YP_001588776.1\| leucine-responsive transcriptional regulator [Salmonella enterica s... gi\|160865262, gi... - gi\|161503915\|ref\|YP_001571027.1\| leucine-responsive transcriptional regulator [Salmonella enterica s... gi\|157146423, gi... - gi\|157146423\|ref\|YP_001453742.1\| leucine-responsive transcriptional regulator [Citrobacter koseri AT... gi\|150954327, gi... - gi\|152969478\|ref\|YP_001334587.1\| leucine-responsive transcriptional regulator [Klebsiella pneumoniae... gi\|206581091, gi... - gi\|206581091\|ref\|YP_002239458.1\| leucine-responsive regulatory protein [Klebsiella pneumoniae 342], ... gi\|205271948, gi... - gi\|205352167\|ref\|YP_002225968.1\| leucine-responsive transcriptional regulator [Salmonella enterica s... gi\|204929920, gi... - gi\|204929920\|ref\|ZP_03220941.1\| leucine responsive regulatory protein [Salmonella enterica subsp. en... gi\|199601935, gi... - gi\|200389490\|ref\|ZP_03216101.1\| leucine responsive regulatory protein [Salmonella enterica subsp. en... gi\|224467296, gi... - gi\|224582769\|ref\|YP_002636567.1\| leucine-responsive regulatory protein [Salmonella enterica subsp. e... gi\|206708154, gi... - gi\|207856351\|ref\|YP_002243002.1\| leucine-responsive transcriptional regulator [Salmonella enterica s... gi\|194734832, gi... - gi\|194734832\|ref\|YP_002114011.1\| leucine responsive regulatory protein [Salmonella enterica subsp. e... gi\|194469844, gi... - gi\|194469844\|ref\|ZP_03075828.1\| leucine responsive regulatory protein [Salmonella enterica subsp. en... gi\|194407253, gi... - gi\|194448949\|ref\|YP_002044952.1\| leucine-responsive transcriptional regulator [Salmonella enterica s... gi\|194443719, gi... - gi\|194443719\|ref\|YP_002040158.1\| leucine responsive regulatory protein [Salmonella enterica subsp. e... gi\|198242823, gi... - gi\|198242823\|ref\|YP_002214883.1\| leucine responsive regulatory protein [Salmonella enterica subsp. e... gi\|197362912, gi... - gi\|197362912\|ref\|YP_002142549.1\| leucine-responsive transcriptional regulator [Salmonella enterica s... gi\|197261953, gi... - gi\|197261953\|ref\|ZP_03162027.1\| leucine responsive regulatory protein [Salmonella enterica subsp. en... gi\|197251292, gi... - gi\|197251292\|ref\|YP_002145877.1\| leucine responsive regulatory protein [Salmonella enterica subsp. e...	4.0E-42	[1..164]	[1..164]
gi\|37525547, gi\|... - gi\|37525547\|ref\|NP_928891.1\| leucine-responsive transcriptional regulator [Photorhabdus luminescens ... gi\|253990320, gi... - gi\|253990320\|ref\|YP_003041676.1\| leucine-responsive regulatory protein [Photorhabdus asymbiotica], g...	7.0E-42	[1..164]	[1..164]
gi\|68304100\|gb\|A... - Lrp [Escherichia coli] gi\|68304100 - gi\|68304100\|gb\|AAY89708.1\| Lrp [Escherichia coli]	7.0E-42	[1..164]	[14..177]
gi\|110804890, gi... - gi\|110804890\|ref\|YP_688410.1\| leucine-responsive transcriptional regulator [Shigella flexneri 5 str.... gi\|218431415, gi... - gi\|218704318\|ref\|YP_002411837.1\| leucine-responsive transcriptional regulator [Escherichia coli UMN0... gi\|1651411, gi\|8... - gi\|89107739\|ref\|AP_001519.1\| DNA-binding transcriptional dual regulator, leucine-binding [Escherichi... gi\|15830228, gi\|... - gi\|15830228\|ref\|NP_309001.1\| leucine-responsive transcriptional regulator [Escherichia coli O157:H7 ... EG10547 - leucine-responsive global transcriptional regulator / Global regulatory protein, Leu responsive; reg... gi\|215486019, gi... - gi\|215486019\|ref\|YP_002328450.1\| leucine-responsive transcriptional regulator [Escherichia coli O127... gi\|217321831, gi... - gi\|217325610\|ref\|ZP_03441694.1\| leucine responsive regulatory protein [Escherichia coli O157:H7 str.... gi\|218355952, gi... - gi\|218548411\|ref\|YP_002382202.1\| leucine-responsive transcriptional regulator [Escherichia fergusoni... gi\|218360243, gi... - gi\|218553475\|ref\|YP_002386388.1\| leucine-responsive transcriptional regulator [Escherichia coli IAI1... gi\|218364566, gi... - gi\|218557797\|ref\|YP_002390710.1\| leucine-responsive transcriptional regulator [Escherichia coli S88]... gi\|218426241, gi... - gi\|218688677\|ref\|YP_002396889.1\| leucine-responsive transcriptional regulator [Escherichia coli ED1a... gi\|218694362, gi... - gi\|218694362\|ref\|YP_002402029.1\| leucine-responsive transcriptional regulator [Escherichia coli 5598... gi\|218370581, gi... - gi\|218700595\|ref\|YP_002408224.1\| leucine-responsive transcriptional regulator [Escherichia coli IAI3... gi\|118678384, gi... - gi\|146311070\|ref\|YP_001176144.1\| leucine-responsive transcriptional regulator [Enterobacter sp. 638]... LRP_ECOL6 - Leucine-responsive regulatory protein OS=Escherichia coli O6 GN=lrp PE=3 SV=2 LRP_SHIFL - Leucine-responsive regulatory protein OS=Shigella flexneri GN=lrp PE=3 SV=2 gi\|193064617, gi... - gi\|75257396\|ref\|ZP_00728912.1\| COG1522: Transcriptional regulators [Escherichia coli E22], gi\|193064... gi\|188489755, gi... - gi\|75512042\|ref\|ZP_00734627.1\| COG1522: Transcriptional regulators [Escherichia coli 53638], gi\|1884... gi\|56383308, gi\|... - gi\|56479757\|ref\|NP_706774.2\| leucine-responsive transcriptional regulator [Shigella flexneri 2a str.... LRP_ECOL6 - Leucine-responsive regulatory protein OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)... gi\|254792089, gi... - gi\|254792089\|ref\|YP_003076926.1\| DNA-binding transcriptional dual regulator, leucine-binding [Escher... gi\|162138460 - gi\|162138460\|ref\|YP_539920.2\| leucine-responsive transcriptional regulator [Escherichia coli UTI89] gi\|254161003, gi... - gi\|254161003\|ref\|YP_003044111.1\| DNA-binding transcriptional dual regulator, leucine-binding [Escher... gi\|81241737, gi\|... - gi\|82777589\|ref\|YP_403938.1\| leucine-responsive transcriptional regulator [Shigella dysenteriae Sd19... gi\|188013961, gi... - gi\|188013961\|gb\|EDU52083.1\| leucine responsive regulatory protein [Escherichia coli O157:H7 str. EC4... gi\|253774082, gi... - gi\|254287811\|ref\|YP_003053559.1\| DNA-binding transcriptional dual regulator, leucine-binding [Escher... gi\|81244786, gi\|... - gi\|82543375\|ref\|YP_407322.1\| leucine-responsive transcriptional regulator [Shigella boydii Sb227], g... gi\|189355916, gi... - gi\|189355916\|gb\|EDU74335.1\| leucine responsive regulatory protein [Escherichia coli O157:H7 str. EC4... gi\|251784431, gi... - gi\|251784431\|ref\|YP_002998735.1\| hypothetical protein B21_00900 [Escherichia coli BL21], gi\|24237670... gi\|75178307, gi\|... - gi\|75178307\|ref\|ZP_00698361.1\| COG1522: Transcriptional regulators [Shigella boydii BS512], gi\|18773... gi\|238900147, gi... - gi\|238900147\|ref\|YP_002925943.1\| DNA-binding transcriptional dual regulator, leucine-binding [Escher... gi\|75189929, gi\|... - gi\|75189929\|ref\|ZP_00703196.1\| COG1522: Transcriptional regulators [Escherichia coli E24377A], gi\|15... gi\|75229257, gi\|... - gi\|75229257\|ref\|ZP_00715822.1\| COG1522: Transcriptional regulators [Escherichia coli B7A], gi\|191167... gi\|190907636, gi... - gi\|75240966\|ref\|ZP_00724855.1\| COG1522: Transcriptional regulators [Escherichia coli F11], gi\|191172... gi\|157066092, gi... - gi\|75195077\|ref\|ZP_00705147.1\| COG1522: Transcriptional regulators [Escherichia coli HS], gi\|1571604... gi\|75210422, gi\|... - gi\|75210422\|ref\|ZP_00710578.1\| COG1522: Transcriptional regulators [Escherichia coli B171], gi\|19442... gi\|170121845, gi... - gi\|170769193\|ref\|ZP_02903646.1\| leucine responsive regulatory protein [Escherichia albertii TW07627]... gi\|194435162, gi... - gi\|194435162\|ref\|ZP_03067395.1\| leucine responsive regulatory protein [Shigella dysenteriae 1012], g... gi\|195939552 - gi\|195939552\|ref\|ZP_03084934.1\| leucine-responsive transcriptional regulator [Escherichia coli O157:... gi\|208809659, gi... - gi\|208809659\|ref\|ZP_03251996.1\| leucine responsive regulatory protein [Escherichia coli O157:H7 str.... gi\|208731471, gi... - gi\|208814823\|ref\|ZP_03256002.1\| leucine responsive regulatory protein [Escherichia coli O157:H7 str.... gi\|208737981, gi... - gi\|208822496\|ref\|ZP_03262815.1\| leucine responsive regulatory protein [Escherichia coli O157:H7 str.... gi\|209157783, gi... - gi\|209396383\|ref\|YP_002269562.1\| leucine responsive regulatory protein [Escherichia coli O157:H7 str... gi\|209918138, gi... - gi\|209918138\|ref\|YP_002292222.1\| leucine-responsive transcriptional regulator [Escherichia coli SE11... gi\|168762978, gi... - gi\|189366811\|gb\|EDU85227.1\| leucine responsive regulatory protein [Escherichia coli O157:H7 str. EC4... gi\|189361124, gi... - gi\|189361124\|gb\|EDU79543.1\| leucine responsive regulatory protein [Escherichia coli O157:H7 str. EC4... gi\|168783800, gi... - gi\|188998923\|gb\|EDU67909.1\| leucine responsive regulatory protein [Escherichia coli O157:H7 str. EC4... gi\|189371198, gi... - gi\|189371198\|gb\|EDU89614.1\| leucine responsive regulatory protein [Escherichia coli O157:H7 str. EC8... gi\|189376423, gi... - gi\|189376423\|gb\|EDU94839.1\| leucine responsive regulatory protein [Escherichia coli O157:H7 str. EC5... gi\|170020709, gi... - gi\|170020709\|ref\|YP_001725663.1\| leucine-responsive transcriptional regulator [Escherichia coli ATCC... gi\|170080547, gi... - gi\|170080547\|ref\|YP_001729867.1\| DNA-binding transcriptional dual regulator, leucine-binding [Escher... gi\|170517578, gi... - gi\|170679860\|ref\|YP_001744281.1\| leucine responsive regulatory protein [Escherichia coli SMS-3-5], g... LRP_ENTAE - Leucine-responsive regulatory protein OS=Enterobacter aerogenes GN=lrp PE=3 SV=2 LRP_ECOLI - Leucine-responsive regulatory protein - Escherichia coli gi\|30062376, gi\|... - gi\|30062376\|ref\|NP_836547.1\| leucine-responsive transcriptional regulator [Shigella flexneri 2a str.... LRP_ECO57 - Leucine-responsive regulatory protein OS=Escherichia coli O157:H7 GN=lrp PE=3 SV=2 EG10547 - leucine-responsive global transcriptional regulator / Global regulatory protein, Leu responsive; reg... gi\|12514051, gi\|... - gi\|15800752\|ref\|NP_286766.1\| leucine-responsive transcriptional regulator [Escherichia coli O157:H7 ...	7.0E-42	[1..164]	[1..164]
gi\|226898331, gi... - gi\|237707121\|ref\|ZP_04537602.1\| leucine-responsive transcriptional regulator [Escherichia sp. 3_2_53... gi\|26107315, gi\|... - gi\|26246915\|ref\|NP_752955.1\| Leucine-responsive Regulatory protein [Escherichia coli CFT073], gi\|261... gi\|91071508, gi\|... - gi\|91209934\|ref\|YP_539920.1\| leucine-responsive regulatory protein [Escherichia coli UTI89], gi\|9107... gi\|24112264, gi\|... - ref\|NP_706774.1\| regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid ... gi\|117623073, gi... - gi\|117623073\|ref\|YP_851986.1\| leucine-responsive transcriptional regulator [Escherichia coli APEC O1...	7.0E-42	[1..164]	[19..182]
gi\|227332418, gi... - gi\|228556442\|gb\|EEK21107.1\| hypothetical protein CIT292_01902 [Citrobacter youngae ATCC 29220], gi\|2... gi\|237730854, gi... - gi\|237730854\|ref\|ZP_04561335.1\| leucine-responsive transcriptional regulator lrp [Citrobacter sp. 30... LRP_KLEPN - Leucine-responsive regulatory protein OS=Klebsiella pneumoniae GN=lrp PE=3 SV=3	8.0E-42	[1..164]	[1..164]
gi\|118017743, gi... - gi\|157369925\|ref\|YP_001477914.1\| leucine-responsive transcriptional regulator [Serratia proteamacula... tr\|U1U9Z1\|U1U9Z1... - Leucine-binding transcriptional regulator OS=Serratia marcescens WW4 GN=lrp PE=4 SV=1, Transcription... gi\|30179433, gi\|... - gi\|31195993\|ref\|XP_306944.1\| ENSANGP00000000462 [Anopheles gambiae str. PEST], gi\|30179433\|gb\|EAA027... tr\|G0B3U3\|G0B3U3... - Transcriptional regulator, AsnC family OS=Serratia plymuthica (strain AS9) GN=SerAS9_1663 PE=4 SV=1 tr\|D4E8F1\|D4E8F1... - Leucine responsive regulatory protein OS=Serratia odorifera DSM 4582 GN=lrp PE=4 SV=1 tr\|I3AI29\|I3AI29... - AsnC family transcriptional regulator OS=Serratia plymuthica S13 GN=M621_08640 PE=4 SV=1, Leucine-re... tr\|G0BZH6\|G0BZH6... - Transcriptional regulator, AsnC family OS=Serratia sp. AS13 GN=SerAS13_1664 PE=4 SV=1 tr\|S5EFS9\|S5EFS9... - AsnC family transcriptional regulator OS=Serratia liquefaciens ATCC 27592 GN=M495_07965 PE=4 SV=1 tr\|G0BKN9\|G0BKN9... - Transcriptional regulator, AsnC family OS=Serratia sp. AS12 GN=SerAS12_1663 PE=4 SV=1	8.0E-42	[1..164]	[1..164]
gi\|148981573, gi... - gi\|148981573\|ref\|ZP_01816460.1\| leucine-responsive transcriptional regulator [Vibrionales bacterium ... gi\|218323046, gi... - gi\|218710027\|ref\|YP_002417648.1\| leucine-responsive transcriptional regulator [Vibrio splendidus LGP... gi\|85833451, gi\|... - gi\|86148754\|ref\|ZP_01067026.1\| Leucine-responsive regulatory protein [Vibrio sp. MED222], gi\|8583345... gi\|84375194, gi\|... - gi\|84394174\|ref\|ZP_00992905.1\| Leucine-responsive regulatory protein [Vibrio splendidus 12B01], gi\|8...	1.0E-41	[1..164]	[1..164]

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Predicted Domain #1

Region A:
Residues: [1-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDSKKRPGK DLDRIDRNIL NELQKDGRIS NVELSKRVGL SPTPCLERVR RLERQGFIQG  60
   61 YTALLNPHYL DASLLVFVEI TLNRGAPDVF EQFNAAVKKL EEIQECHLVS GDFDYLLKTR 120
  121 VPDMSAYRKL LGETLLRLPG VNDTRTYVVM EEVKQSNRLV IKTR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.522879
Match:	2gqqA
Description:	No description for 2gqqA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits