YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213426729
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E02-1180
Length:	230 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213426729.

Description	E-value	Query Range	Subject Range
gi\|397533, gi\|480292 - pir\|\|S36632 molecular chaperone fimC - Salmonella typhi, gi\|397533\|emb\|CAA52682.1\| fimC [Salmonella ... gi\|397533\|emb\|CA... - fimC [Salmonella typhi]	1.0E-72	[1..230]	[8..237]
gi\|56414306, gi\|... - gi\|56414306\|ref\|YP_151381.1\| fimbrial chaperone protein [Salmonella enterica subsp. enterica serovar... gi\|197094703, gi... - gi\|197363226\|ref\|YP_002142863.1\| fimbrial chaperone protein [Salmonella enterica subsp. enterica ser...	2.0E-71	[1..230]	[1..230]
FIMC_SALTY - Chaperone protein fimC OS=Salmonella typhimurium GN=fimC PE=3 SV=1 gi\|195631672, gi... - gi\|195631672\|gb\|EDX50192.1\| chaperone protein FimC [Salmonella enterica subsp. enterica serovar Newp... gi\|205339743, gi... - gi\|205339743\|gb\|EDZ26507.1\| chaperone protein FimC [Salmonella enterica subsp. enterica serovar Heid... gi\|205330847, gi... - gi\|205330847\|gb\|EDZ17611.1\| chaperone protein FimC [Salmonella enterica subsp. enterica serovar 4,[5... lcl\|NC_016856.1_... - [gene=fimC] [protein=periplasmic chaperone] [protein_id=YP_005236250.1] [location=606019..606711] FIMC_SALTY - Chaperone protein FimC OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=fimC PE=3 ... FIMC_SALTY - Chaperone protein fimC OS=Salmonella typhimurium GN=fimC PE=3 SV=1	3.0E-71	[1..230]	[1..230]
gi\|27525446 - gi\|27525446\|emb\|CAD56972.1\| fimbrial chaperone protein [Citrobacter freundii]	3.0E-71	[1..229]	[1..229]
gi\|14594876 - gi\|14594876\|emb\|CAC16952.2\| SfaE protein [Escherichia coli] gi\|75241891, gi\|... - gi\|75241891\|ref\|ZP_00725710.1\| COG3121: P pilus assembly protein, chaperone PapD [Escherichia coli F... gi\|110640501, gi... - gi\|110640501\|ref\|YP_668229.1\| F1C periplasmic chaperone [Escherichia coli 536], gi\|110342093\|gb\|ABG6...	5.0E-66	[1..223]	[1..224]
gi\|26247115, gi\|... - gi\|26247115\|ref\|NP_753155.1\| F1C periplasmic chaperone [Escherichia coli CFT073], gi\|26107515\|gb\|AAN... gi\|158147690, gi... - gi\|83356324\|gb\|ABC16647.1\| FocC [Escherichia coli], gi\|47600591\|emb\|CAE55712.1\| FocC protein [Escher... gi\|47600591 - gi\|47600591\|emb\|CAE55712.1\| FocC protein [Escherichia coli Nissle 1917] gi\|227834963, gi... - gi\|227888117\|ref\|ZP_04005922.1\| F1C periplasmic chaperone [Escherichia coli 83972], gi\|227834963\|gb\|...	5.0E-66	[1..223]	[1..224]
gi\|91210140, gi\|... - gi\|91210140\|ref\|YP_540126.1\| S fimbriae periplasmic chaperone SfaE [Escherichia coli UTI89], gi\|9107...	1.0E-65	[1..223]	[1..224]
EG12774 - putative periplasmic pilin chaperone / Predicted periplasmic pilus chaperone, function unknown gi\|238862814, gi... - gi\|238902247\|ref\|YP_002928043.1\| putative periplasmic pilin chaperone [Escherichia coli BW2952], gi\|... gi\|170082680, gi... - gi\|170082680\|ref\|YP_001732000.1\| periplasmic pilin chaperone [Escherichia coli str. K-12 substr. DH1... gi\|89109908, gi\|... - gi\|89109908\|ref\|AP_003688.1\| predicted periplasmic pilin chaperone [Escherichia coli str. K-12 subst... EG12774 - putative periplasmic pilin chaperone / Predicted periplasmic pilus chaperone, function unknown YRAI_ECOLI - Hypothetical fimbrial chaperone yraI precursor - Escherichia coli	2.0E-65	[2..229]	[1..230]
gi\|238799305, gi... - gi\|77960106\|ref\|ZP_00823998.1\| COG3121: P pilus assembly protein, chaperone PapD [Yersinia mollareti...	2.0E-65	[2..229]	[1..228]
gi\|110807011, gi... - gi\|110807011\|ref\|YP_690531.1\| putative chaperone [Shigella flexneri 5 str. 8401], gi\|110616559\|gb\|AB...	2.0E-65	[2..229]	[1..230]

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Predicted Domain #1

Region A:
Residues: [1-230]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNSIKLGFI VLLTLFTSLN VQAAGGIALG ATRVIYPSAA KQTSLAISNS DTQERYLVNS  60
   61 WIENNAGQKE KTFIVTPPLF VSEPKSENTL RIIYAGQPLP EDRESLFWMN VKAIPSVDKS 120
  121 HIEGKNVLQL AILSRIKLFV RPANLPQTPE DAPTLLKFSR VGNHLKITNP SAYYLTLVNI 180
  181 SVGAKKIDNV MIAPKSDMQI PLPTGAQGSV TFQTVNDYGA LTSATTASLG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	61.221849
Match:	1l4iA
Description:	Periplasmic chaperone SfaE; SfaE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.40357083304367	bayes_pls_golite062009
protein binding	1.19650199611166	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: