YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213583258
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E98-0664
Length:	115 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213583258.

Description	E-value	Query Range	Subject Range
gi\|25371894, gi\|... - pir\|\|B64735 yacC protein - Escherichia coli (strain K-12), pir\|\|F90644 hypothetical protein ECs0126... gi\|1786313, gi\|4... - gi\|49175998\|ref\|NP_414664.3\| hypothetical protein b0122 [Escherichia coli K12], gb\|AAC73233.1\| orf, ... gi\|13359582 - gi\|13359582\|dbj\|BAB33549.1\| hypothetical protein [Escherichia coli O157:H7] gi\|15799806, gi\|... - gi\|15799806\|ref\|NP_285818.1\| hypothetical protein Z0132 [Escherichia coli O157:H7 EDL933], gi\|125128... gi\|13359582 - gi\|13359582\|dbj\|BAB33549.1\| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi\|81239559, gi\|... - gi\|82775411\|ref\|YP_401757.1\| hypothetical protein SDY_0029 [Shigella dysenteriae Sd197], gi\|81239559... gi\|81244136, gi\|... - gi\|82542725\|ref\|YP_406672.1\| hypothetical protein SBO_0111 [Shigella boydii Sb227], gi\|81244136\|gb\|A... gi\|74310740, gi\|... - gi\|74310740\|ref\|YP_309159.1\| hypothetical protein SSON_0130 [Shigella sonnei Ss046], gi\|73854217\|gb\|...	3.0E-61	[1..115]	[42..156]
gi\|227884967, gi... - gi\|227884967\|ref\|ZP_04002772.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783810... gi\|237704279, gi... - gi\|237704279\|ref\|ZP_04534760.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|218350320, gi... - gi\|218693588\|ref\|YP_002401255.1\| hypothetical protein EC55989_0115 [Escherichia coli 55989], gi\|2183... gi\|218698542, gi... - gi\|218698542\|ref\|YP_002406171.1\| hypothetical protein ECIAI39_0122 [Escherichia coli IAI39], gi\|2183... gi\|254037539, gi... - gi\|254037539\|ref\|ZP_04871616.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22684064... gi\|218557065, gi... - gi\|218557065\|ref\|YP_002389978.1\| hypothetical protein ECS88_0131 [Escherichia coli S88], gi\|21836383... gi\|218425564, gi... - gi\|218688000\|ref\|YP_002396212.1\| hypothetical protein ECED1_0126 [Escherichia coli ED1a], gi\|2184255... gi\|91209190, gi\|... - gi\|91209190\|ref\|YP_539176.1\| hypothetical protein UTI89_C0135 [Escherichia coli UTI89], gi\|91070764\|... gi\|218552703, gi... - gi\|218552703\|ref\|YP_002385616.1\| hypothetical protein ECIAI1_0120 [Escherichia coli IAI1], gi\|218359... gi\|26106459, gi\|... - gi\|26246062\|ref\|NP_752101.1\| hypothetical protein c0151 [Escherichia coli CFT073], gi\|26106459\|gb\|AA...	5.0E-61	[1..115]	[58..172]
gi\|110613732, gi... - gi\|110804184\|ref\|YP_687703.1\| hypothetical protein SFV_0114 [Shigella flexneri 5 str. 8401], gi\|1106...	1.0E-60	[1..115]	[58..172]
gi\|117622409, gi... - gi\|117622409\|ref\|YP_851322.1\| hypothetical protein APECO1_1863 [Escherichia coli APEC O1], gi\|115511...	6.0E-60	[1..115]	[14..128]
gi\|170021524, gi... - gi\|170021524\|ref\|YP_001726478.1\| hypothetical protein EcolC_3537 [Escherichia coli ATCC 8739], gi\|16... gi\|170079759, gi... - gi\|170079759\|ref\|YP_001729079.1\| hypothetical protein ECDH10B_0102 [Escherichia coli str. K-12 subst... YACC_ECOL6 - Uncharacterized protein yacC OS=Escherichia coli O6 GN=yacC PE=4 SV=1 gi\|170518325, gi... - gi\|170680607\|ref\|YP_001742249.1\| hypothetical protein EcSMS35_0132 [Escherichia coli SMS-3-5], gi\|17... gi\|38703845 - gi\|38703845\|ref\|NP_308153.2\| hypothetical protein ECs0126 [Escherichia coli O157:H7] gi\|187731318, gi... - gi\|187731318\|ref\|YP_001878930.1\| hypothetical protein SbBS512_E0115 [Shigella boydii CDC 3083-94], g... gi\|168776831, gi... - gi\|187767822\|gb\|EDU31666.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|21238975, gi\|... - gi\|89107003\|ref\|AP_000783.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|212... gi\|189000483, gi... - gi\|189000483\|gb\|EDU69469.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... EG11089 - PulS_OutS family protein / Expressed protein, function unknown, PulS_OutS family gi\|38703845 - gi\|38703845\|ref\|NP_308153.2\| hypothetical protein ECs0126 [Escherichia coli O157:H7 str. Sakai] gi\|168789228, gi... - gi\|189371138\|gb\|EDU89554.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|110640340, gi... - gi\|110640340\|ref\|YP_668068.1\| hypothetical protein ECP_0129 [Escherichia coli 536], gi\|110341932\|gb\|... gi\|189376399, gi... - gi\|189376399\|gb\|EDU94815.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|168752438, gi... - gi\|188013703\|gb\|EDU51825.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|189357055, gi... - gi\|189357055\|gb\|EDU75474.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|238862845, gi... - gi\|238899521\|ref\|YP_002925317.1\| hypothetical protein BWG_0115 [Escherichia coli BW2952], gi\|2388628... gi\|168764736, gi... - gi\|189365332\|gb\|EDU83748.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|168770409, gi... - gi\|189360720\|gb\|EDU79139.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|157065270, gi... - gi\|157159590\|ref\|YP_001456908.1\| hypothetical protein EcHS_A0127 [Escherichia coli HS], gi\|157065270... gi\|253972143, gi... - gi\|254160242\|ref\|YP_003043350.1\| hypothetical protein ECB_00121 [Escherichia coli B str. REL606], gi... gi\|157157466, gi... - gi\|157157466\|ref\|YP_001461290.1\| hypothetical protein EcE24377A_0124 [Escherichia coli E24377A], gi\|... gi\|254791257, gi... - gi\|254791257\|ref\|YP_003076094.1\| hypothetical protein ECSP_0123 [Escherichia coli O157:H7 str. TW143... gi\|251783682, gi... - gi\|251783682\|ref\|YP_002997986.1\| hypothetical protein B21_00120 [Escherichia coli BL21], gi\|24237595... gi\|253976352, gi... - gi\|254287045\|ref\|YP_003052793.1\| hypothetical protein ECD_00121 [Escherichia coli BL21(DE3)], gi\|253... gi\|217324965, gi... - gi\|217324965\|ref\|ZP_03441049.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|208813583, gi... - gi\|208813583\|ref\|ZP_03254912.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|208820910, gi... - gi\|208820910\|ref\|ZP_03261230.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|209397732, gi... - gi\|209397732\|ref\|YP_002268729.1\| hypothetical protein ECH74115_0129 [Escherichia coli O157:H7 str. E... gi\|215263358, gi... - gi\|215485286\|ref\|YP_002327717.1\| hypothetical protein E2348C_0125 [Escherichia coli O127:H6 str. E23... gi\|193071236, gi... - gi\|193071236\|ref\|ZP_03052157.1\| conserved hypothetical protein [Escherichia coli E110019], gi\|192955... gi\|194428320, gi... - gi\|194428320\|ref\|ZP_03060862.1\| conserved hypothetical protein [Escherichia coli B171], gi\|194413695... gi\|194439149, gi... - gi\|194439149\|ref\|ZP_03071231.1\| conserved hypothetical protein [Escherichia coli 101-1], gi\|19442196... gi\|195938196 - gi\|195938196\|ref\|ZP_03083578.1\| hypothetical protein EscherichcoliO157_17476 [Escherichia coli O157:... gi\|188490932, gi... - gi\|188495733\|ref\|ZP_03003003.1\| conserved hypothetical protein [Escherichia coli 53638], gi\|18849093... YACC_ECOL6 - Uncharacterized protein YacC OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yacC ... gi\|191166363, gi... - gi\|191166363\|ref\|ZP_03028195.1\| conserved hypothetical protein [Escherichia coli B7A], gi\|190903614\|... gi\|190906950, gi... - gi\|191172800\|ref\|ZP_03034337.1\| conserved hypothetical protein [Escherichia coli F11], gi\|190906950\|... gi\|192931105, gi... - gi\|193063197\|ref\|ZP_03044288.1\| conserved hypothetical protein [Escherichia coli E22], gi\|192931105\|... YACC_ECOLI - Hypothetical protein yacC precursor - Escherichia coli EG11089 - PulS_OutS family protein / Expressed protein, function unknown, PulS_OutS family gi\|124499111, gi... - gi\|124530584\|ref\|ZP_01701187.1\| conserved hypothetical protein [Escherichia coli B], gi\|124499111\|gb...	9.0E-60	[1..115]	[1..115]
gi\|30039929, gi\|... - gi\|30061687\|ref\|NP_835858.1\| hypothetical protein S0121 [Shigella flexneri 2a str. 2457T], gi\|300399...	2.0E-59	[1..115]	[42..156]
gi\|62178737, gi\|... - gi\|62178737\|ref\|YP_215154.1\| hypothetical protein SC0167 [Salmonella enterica subsp. enterica serova...	2.0E-59	[1..115]	[1..115]
gi\|24111565, gi\|... - gi\|24111565\|ref\|NP_706075.1\| hypothetical protein SF0120 [Shigella flexneri 2a str. 301], gi\|2405032...	3.0E-59	[1..115]	[58..172]
gi\|75511997 - gi\|75511997\|ref\|ZP_00734592.1\| hypothetical protein Ecol5_01003755 [Escherichia coli 53638] gi\|75258885 - gi\|75258885\|ref\|ZP_00730275.1\| hypothetical protein EcolE2_01001512 [Escherichia coli E22] gi\|75240286 - gi\|75240286\|ref\|ZP_00724233.1\| hypothetical protein EcolF_01002736 [Escherichia coli F11] gi\|75233849 - gi\|75233849\|ref\|ZP_00718319.1\| hypothetical protein EcolE1_01004168 [Escherichia coli E110019] gi\|75230516 - gi\|75230516\|ref\|ZP_00716997.1\| hypothetical protein EcolB7_01001332 [Escherichia coli B7A] gi\|75210449 - gi\|75210449\|ref\|ZP_00710600.1\| hypothetical protein EcolB_01002366 [Escherichia coli B171] gi\|75194337 - gi\|75194337\|ref\|ZP_00704407.1\| hypothetical protein EcolH_01000111 [Escherichia coli HS] gi\|75189221 - gi\|75189221\|ref\|ZP_00702488.1\| hypothetical protein EcolE_01002502 [Escherichia coli E24377A] gi\|75176529 - gi\|75176529\|ref\|ZP_00696666.1\| hypothetical protein SboyB_01003529 [Shigella boydii BS512] gi\|83585441 - gi\|83585441\|ref\|ZP_00924086.1\| hypothetical protein Ecol1_01003302 [Escherichia coli 101-1] gi\|194418330, gi... - gi\|83569703\|ref\|ZP_00921153.1\| hypothetical protein Sdys1_01002004 [Shigella dysenteriae 1012], gi\|1...	9.0E-55	[8..115]	[1..108]
gi\|36784268, gi\|... - gi\|37524843\|ref\|NP_928187.1\| hypothetical protein plu0844 [Photorhabdus luminescens subsp. laumondii...	2.0E-47	[8..115]	[12..115]

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Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTFFRPVLF GSLMALCANS YALTESEAED MADLTAVFVF LKNDCGYQNL PNSQIRRALV  60
   61 FFAQQNQWDL SNYDTFDMKS LGEDSYRDLS GIGIPVAKKC KALARDSLSL LAYVK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.812	a.11.1	Acyl-CoA binding protein

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits