YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|167054823, gi...
Organism:	Yersinia pestis biovar Mediaevalis str. K1973002
Length:	374 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|167054823, gi....

Description	E-value	Query Range	Subject Range
gi\|77633325 - gi\|77633325\|ref\|ZP_00795462.1\| COG2959: Uncharacterized enzyme of heme biosynthesis [Yersinia pestis... gi\|77630749, gi\|... - gi\|77630749\|ref\|ZP_00793335.1\| COG2959: Uncharacterized enzyme of heme biosynthesis [Yersinia pseudo... gi\|21957065, gi\|... - gi\|22124294\|ref\|NP_667717.1\| putative uroporphyrinogen III C-methyltransferase [Yersinia pestis KIM]... gi\|167401808, gi... - gi\|167401808\|ref\|ZP_02307296.1\| putative uroporphyrinogen III methylase [Yersinia pestis biovar Anti... gi\|45442947, gi\|... - gi\|45442947\|ref\|NP_994486.1\| putative uroporphyrinogen III C-methyltransferase [Yersinia pestis biov...	6.0E-98	[1..374]	[4..377]
gi\|51587820, gi\|... - gi\|51594538\|ref\|YP_068729.1\| putative uroporphyrinogen III C-methyltransferase [Yersinia pseudotuber... gi\|186893536, gi... - gi\|186893536\|ref\|YP_001870648.1\| putative uroporphyrinogen III C-methyltransferase [Yersinia pseudot... Q66G02\|Q66G02_YERPS - Putative uroporphyrin-III C-methyltransferase - Yersinia pseudotuberculosis	7.0E-97	[1..374]	[1..374]
gi\|89101533 - gi\|89101533\|ref\|ZP_01174273.1\| COG2959: Uncharacterized enzyme of heme biosynthesis [Yersinia pestis...	1.0E-93	[9..374]	[1..366]
gi\|37528463, gi\|... - gi\|37528463\|ref\|NP_931808.1\| putative uroporphyrinogen III C-methyltransferase [Photorhabdus lumines...	1.0E-85	[1..372]	[1..372]
gi\|238722516, gi... - gi\|77973623\|ref\|ZP_00829169.1\| COG2959: Uncharacterized enzyme of heme biosynthesis [Yersinia freder...	7.0E-83	[1..374]	[4..377]
gi\|28899764, gi\|... - gi\|28899764\|ref\|NP_799369.1\| putative uroporphyrin-III C-methyltransferase [Vibrio parahaemolyticus ... gi\|28808016 - gi\|28808016\|dbj\|BAC61253.1\| putative uroporphyrin-III C-methyltransferase [Vibrio parahaemolyticus R...	2.0E-82	[1..364]	[24..394]
gi\|77978550 - gi\|77978550\|ref\|ZP_00833978.1\| COG2959: Uncharacterized enzyme of heme biosynthesis [Yersinia interm...	2.0E-82	[1..374]	[1..374]
gi\|116184835, gi... - gi\|254230105\|ref\|ZP_04923501.1\| uroporphyrin-III C-methyltransferase [Vibrio sp. Ex25], gi\|194538795...	1.0E-81	[11..364]	[6..362]
gi\|238714335, gi... - gi\|77957821\|ref\|ZP_00821867.1\| COG2959: Uncharacterized enzyme of heme biosynthesis [Yersinia bercov...	4.0E-81	[1..374]	[4..377]
gi\|91227536, gi\|... - gi\|91227536\|ref\|ZP_01261873.1\| putative uroporphyrin-III C-methyltransferase [Vibrio alginolyticus 1...	4.0E-80	[2..364]	[29..394]

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Predicted Domain #1

Region A:
Residues: [1-374]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEQNTPSAP VEEPTTAVER PQQPEPKGHR EKRTGPILGV IAIALVIALG AGLYYHGQQQ  60
   61 AQLQSAENIA LQEQLVALKQ TLLQEKQQLE SLLQQQGKAL ESAENQQASL TRQLNELQEK 120
  121 VATISGSDAK TWLLAQADFL VKMAGRKLWS DQDVTTAVTL LKSADASLAD MNDPSLIDVR 180
  181 RAITEDISAL SAVSQVDFDG IILKLNQLSN QVDNLRLADN NIDDSPMDAN SDELSSSLSE 240
  241 WRQNLSKSWH SFMSDFISIR RRDSSAEPLL APNQDVYLRE NIRSRLLVAA QAVPRHQDEV 300
  301 YKQSLETIST WVRAYFDVND PSTKAFLDEL ENLSQQPISM DVPDQLKSQP ILEKLMQTRV 360
  361 RNLLAQTPVD AQGE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.54
Match:	2bsgA
Description:	The modeled structure of fibritin (gpwac) of bacteriophage T4 based on cryo-EM reconstruction of the extended tail of bacteriophage T4
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits