YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|214000002
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E98-3139
Length:	359 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|214000002.

Description	E-value	Query Range	Subject Range
gi\|62128967, gi\|... - gi\|62181334\|ref\|YP_217751.1\| murein hydrolase B [Salmonella enterica subsp. enterica serovar Cholera...	0.0	[1..359]	[17..375]
gi\|56414783, gi\|... - gi\|56414783\|ref\|YP_151858.1\| murein hydrolase B [Salmonella enterica subsp. enterica serovar Paratyp... gi\|224469136, gi... - gi\|224584609\|ref\|YP_002638407.1\| membrane-bound lytic transglycosylase B precursor [Salmonella enter... gi\|197363711, gi... - gi\|197363711\|ref\|YP_002143348.1\| murein hydrolase B [Salmonella enterica subsp. enterica serovar Par...	0.0	[1..359]	[1..359]
gi\|1800087, gi\|8... - gi\|89109488\|ref\|AP_003268.1\| membrane-bound lytic murein transglycosylase B [Escherichia coli str. K... EG12699 - membrane-bound lytic murein transglycosylase B / Membrane-bound lytic transglycosylase B, murein hyd... gi\|238861751, gi... - gi\|238901838\|ref\|YP_002927634.1\| membrane-bound lytic murein transglycosylase B [Escherichia coli BW... EG12699 - membrane-bound lytic murein transglycosylase B / Membrane-bound lytic transglycosylase B, murein hyd... gi\|193065074, gi... - gi\|193065074\|ref\|ZP_03046149.1\| lytic murein transglycosylase B [Escherichia coli E22], gi\|192927371... gi\|194414030, gi... - gi\|194427797\|ref\|ZP_03060343.1\| lytic murein transglycosylase B [Escherichia coli B171], gi\|19441403... MLTB_ECOLI - Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) (Murein hydrolase B) (35 kDa s... gi\|209913399, gi... - gi\|209920140\|ref\|YP_002294224.1\| murein hydrolase B [Escherichia coli SE11], gi\|209913399\|dbj\|BAG784... gi\|218362011, gi... - gi\|218555243\|ref\|YP_002388156.1\| murein hydrolase B [Escherichia coli IAI1], gi\|218362011\|emb\|CAQ996... gi\|169890112, gi... - gi\|170082277\|ref\|YP_001731597.1\| membrane-bound lytic murein transglycosylase B [Escherichia coli st... gi\|190902892, gi... - gi\|191167110\|ref\|ZP_03028931.1\| lytic murein transglycosylase B [Escherichia coli B7A], gi\|190902892...	0.0	[1..359]	[1..361]
gi\|1097665 - gi\|1097665\|prf\|\|2114299A lytic transglycosylase 35kD	0.0	[1..359]	[1..361]
gi\|91212060, gi\|... - gi\|91212060\|ref\|YP_542046.1\| murein hydrolase B [Escherichia coli UTI89], gi\|91073634\|gb\|ABE08515.1\|... gi\|237706679, gi... - gi\|237706679\|ref\|ZP_04537160.1\| membrane-bound lytic Murein transglycosylase B [Escherichia sp. 3_2_...	0.0	[1..359]	[36..396]
gi\|110616221, gi... - gi\|110806673\|ref\|YP_690193.1\| murein hydrolase B [Shigella flexneri 5 str. 8401], gi\|110616221\|gb\|AB...	0.0	[1..359]	[21..381]
gi\|115514056, gi... - gi\|117624932\|ref\|YP_853920.1\| murein hydrolase B [Escherichia coli APEC O1], gi\|115514056\|gb\|ABJ0213... gi\|110642821, gi... - gi\|110642821\|ref\|YP_670551.1\| murein hydrolase B [Escherichia coli 536], gi\|110344413\|gb\|ABG70650.1\|...	0.0	[1..359]	[17..377]
gi\|26249096, gi\|... - gi\|26249096\|ref\|NP_755136.1\| murein hydrolase B [Escherichia coli CFT073], gi\|26109503\|gb\|AAN81706.1...	0.0	[1..359]	[36..396]
gi\|56383717, gi\|... - gi\|56480166\|ref\|NP_708509.2\| murein hydrolase B [Shigella flexneri 2a str. 301], gi\|56383717\|gb\|AAN4... gi\|30064061, gi\|... - gi\|30064061\|ref\|NP_838232.1\| murein hydrolase B [Shigella flexneri 2a str. 2457T], gi\|30042317\|gb\|AA...	0.0	[1..359]	[1..361]
gi\|191171340, gi... - gi\|191171340\|ref\|ZP_03032889.1\| lytic murein transglycosylase B [Escherichia coli F11], gi\|190908274... gi\|82778070, gi\|... - gi\|82778070\|ref\|YP_404419.1\| murein hydrolase B [Shigella dysenteriae Sd197], gi\|81242218\|gb\|ABB6292... gi\|218433292, gi... - gi\|218706195\|ref\|YP_002413714.1\| murein hydrolase B [Escherichia coli UMN026], gi\|218433292\|emb\|CAR1... gi\|218371177, gi... - gi\|218701191\|ref\|YP_002408820.1\| murein hydrolase B [Escherichia coli IAI39], gi\|218371177\|emb\|CAR19... gi\|218366458, gi... - gi\|218559689\|ref\|YP_002392602.1\| murein hydrolase B [Escherichia coli S88], gi\|218366458\|emb\|CAR0421... gi\|215488020, gi... - gi\|215488020\|ref\|YP_002330451.1\| murein hydrolase B [Escherichia coli O127:H6 str. E2348/69], gi\|215...	0.0	[1..359]	[1..361]

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Predicted Domain #1

Region A:
Residues: [1-359]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKRRYVALL PLCVLLAACS STPKSSETQA TTGTPSGGFL LEPQHNVMQM GGDFANNPNA  60
   61 QQFIDKMVSK HGFDRQQLQE ILSQSKRLDY VLRLMDRQAP TTQPPAGPNG AWLRYRKQFI 120
  121 TPDNVQNGVA FWNQYEDALN RAWQVYGVPP EIIVGIIGVE TRWGRIMGKT RILDALATLS 180
  181 FNYPRRAEYF SGELETFLLM ARDEQDDPLN LKGSFAGAMG YGQFMPSSYK EYAVDFNGDG 240
  241 HINLWDPVDA IGSVANYFKA HGWVKGDMVA VPASGQAPGL ANGFKTKYSI SQLAAAGLTP 300
  301 QQSLGNHQEA SLLRLDIGTG YQYWYGLPNF YTITRYNHST HYAMAVWQLG QAVALARVR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	107.0
Match:	1d0kA
Description:	36 kDa soluble lytic transglycosylase, SLT35
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
penicillin binding	2.70802519764961	bayes_pls_golite062009
catalytic activity	1.95328415115451	bayes_pls_golite062009
lysozyme activity	1.83799209924951	bayes_pls_golite062009
drug binding	1.60556297504678	bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds	1.16054683174437	bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds	1.07226857049823	bayes_pls_golite062009
hydrolase activity	0.677491712259	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	0.45061419828567	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: