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View Structure Prediction Details

Protein: gi|221321373
Organism: Bacillus subtilis subsp. subtilis str. SMY
Length: 289 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|221321373.

Description E-value Query
Range
Subject
Range
ISPE_BACCN - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 11...
286.0 [0..1] [289..1]

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Predicted Domain #1
Region A:
Residues: [1-289]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRILEKAPAK INLSLDVTRK RPDGYHEVEM IMTTIDLADR IELTELAEDE VRVSSHNRFV  60
   61 PDDQRNLAYQ AAKLIKDRYN VKKGVSIMIT KVIPVAAGLA GGSSDAAATL RGLNRLWNLN 120
  121 LSAETLAELG AEIGSDVSFC VYGGTALATG RGEKIKHIST PPHCWVILAK PTIGVSTAEV 180
  181 YRALKLDGIE HPDVQGMIEA IEEKSFQKMC SRLGNVLESV TLDMHPEVAM IKNQMKRFGA 240
  241 DAVLMSGSGP TVFGLVQYES KVQRIYNGLR GFCDQVYAVR MIGEQNALD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 61.69897
Match: 1oj4A
Description: Ternary complex of 4-diphosphocytidyl-2C-methyl-D-erythritol kinase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity 1.9881460462076 bayes_pls_golite062009
catalytic activity 1.20658247466773 bayes_pls_golite062009
diphosphomevalonate decarboxylase activity 1.0502744466494 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle