YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|189405740, gi...
Organism:	Escherichia coli O157:H7 str. EC508
Length:	63 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|189405740, gi....

Description	E-value	Query Range	Subject Range
gi\|205337674, gi... - gi\|205359221\|ref\|ZP_02668212.2\| putative inner membrane protein [Salmonella enterica subsp. enterica... gi\|205329867, gi... - gi\|205357723\|ref\|ZP_02572910.2\| putative inner membrane protein [Salmonella enterica subsp. enterica... gi\|205358518, gi... - gi\|205358518\|ref\|ZP_02657112.2\| putative inner membrane protein [Salmonella enterica subsp. enterica... gi\|197213842, gi... - gi\|197250139\|ref\|YP_002147459.1\| putative inner membrane protein [Salmonella enterica subsp. enteric... gi\|204929701, gi... - gi\|204929701\|ref\|ZP_03220775.1\| putative inner membrane protein [Salmonella enterica subsp. enterica... gi\|168817741, gi... - gi\|205344791\|gb\|EDZ31555.1\| putative inner membrane protein [Salmonella enterica subsp. enterica ser... gi\|194459121, gi... - gi\|194472757\|ref\|ZP_03078741.1\| putative inner membrane protein [Salmonella enterica subsp. enterica... gi\|168261456, gi... - gi\|205349559\|gb\|EDZ36190.1\| putative inner membrane protein [Salmonella enterica subsp. enterica ser... gi\|238913643 - gi\|238913643\|ref\|ZP_04657480.1\| putative inner membrane protein [Salmonella enterica subsp. enterica... gi\|195630868, gi... - gi\|195630868\|gb\|EDX49460.1\| putative inner membrane protein [Salmonella enterica subsp. enterica ser... gi\|161362104, gi... - gi\|161612740\|ref\|YP_001586704.1\| hypothetical protein SPAB_00439 [Salmonella enterica subsp. enteric... gi\|197288898, gi... - gi\|197288898\|gb\|EDY28271.1\| putative inner membrane protein [Salmonella enterica subsp. enterica ser... gi\|16421049, gi\|... - gi\|16765826\|ref\|NP_461441.1\| putative inner membrane protein [Salmonella typhimurium LT2], gi\|164210... lcl\|NC_016856.1_... - [gene=STM14_3071] [protein=putative inner membrane protein] [protein_id=YP_005238599.1] [location=26...	97.0	[0..1]	[63..1]
gi\|62128705, gi\|... - gi\|62181072\|ref\|YP_217489.1\| putative inner membrane protein [Salmonella enterica subsp. enterica se...	94.0	[0..1]	[63..1]
gi\|77958960 - gi\|77958960\|ref\|ZP_00822985.1\| hypothetical protein YberA_01000784 [Yersinia bercovieri ATCC 43970]	80.0	[0..10]	[58..2]
gi\|229681651, gi... - gi\|229901722\|ref\|ZP_04516844.1\| putative exported protein [Yersinia pestis Nepal516], gi\|229681651\|g... gi\|229895401, gi... - gi\|229895401\|ref\|ZP_04510573.1\| putative exported protein [Yersinia pestis Pestoides A], gi\|22970155... gi\|229898980, gi... - gi\|229898980\|ref\|ZP_04514124.1\| putative exported protein [Yersinia pestis biovar Orientalis str. In... gi\|153947473, gi... - gi\|153947473\|ref\|YP_001400206.1\| hypothetical protein YpsIP31758_1225 [Yersinia pseudotuberculosis I... gi\|149365301, gi... - gi\|149365301\|ref\|ZP_01887336.1\| putative exported protein [Yersinia pestis CA88-4125], gi\|149291714\|... gi\|145599462, gi... - gi\|145599462\|ref\|YP_001163538.1\| hypothetical protein YPDSF_2188 [Yersinia pestis Pestoides F], gi\|1... gi\|22125294, gi\|... - gi\|22125294\|ref\|NP_668717.1\| hypothetical protein y1396 [Yersinia pestis KIM], gi\|21958169\|gb\|AAM849... Q668D6\|Q668D6_YERPS - Putative exported protein precursor - Yersinia pseudotuberculosis gi\|25510925 - pir\|\|AG0345 probable exported protein YPO2838 [imported] - Yersinia pestis (strain CO92) gi\|51590402, gi\|... - gi\|51597120\|ref\|YP_071311.1\| hypothetical protein YPTB2804 [Yersinia pseudotuberculosis IP 32953], g... gi\|167467166 - gi\|167467166\|ref\|ZP_02331870.1\| hypothetical protein YpesF_04530 [Yersinia pestis FV-1] gi\|45437343, gi\|... - gi\|45442478\|ref\|NP_994017.1\| hypothetical protein YP_2705 [Yersinia pestis biovar Microtus str. 9100... gi\|15980807, gi\|... - gi\|218929901\|ref\|YP_002347776.1\| hypothetical protein YPO2838 [Yersinia pestis CO92], gi\|16123033\|re... gi\|229694779, gi... - gi\|229838413\|ref\|ZP_04458572.1\| putative exported protein [Yersinia pestis biovar Orientalis str. PE...	73.0	[0..10]	[58..10]
gi\|89104916 - gi\|89104916\|ref\|ZP_01177446.1\| hypothetical protein Ypesb_01001078 [Yersinia pestis biovar Orientali... gi\|77629847, gi\|... - gi\|77629847\|ref\|ZP_00792433.1\| hypothetical protein YpseI_01001194 [Yersinia pseudotuberculosis IP 3... gi\|77636355 - gi\|77636355\|ref\|ZP_00798430.1\| hypothetical protein YpesA_01000322 [Yersinia pestis Angola]	66.0	[0..17]	[58..1]

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Predicted Domain #1

Region A:
Residues: [1-63]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQATSMRKR HRFNSRMTRI VLLISFIFFF GRFIYSSVGA WQHHQSKKEA QQSTLSVESP  60
   61 VQR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits