YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|207857223, gi...
Organism:	Salmonella enterica subsp. enterica serovar Enteritidis str. P125109
Length:	83 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|207857223, gi....

Description	E-value	Query Range	Subject Range
lcl\|NC_016856.1_... - [gene=yaoF] [protein=putative hemolysin] [protein_id=YP_005237117.1] [location=1363795..1364046] gi\|204322814, gi... - gi\|204927472\|ref\|ZP_03218673.1\| putative hemolysin [Salmonella enterica subsp. enterica serovar Javi... gi\|197263552, gi... - gi\|197263552\|ref\|ZP_03163626.1\| putative hemolysin [Salmonella enterica subsp. enterica serovar Sain... gi\|238910909 - gi\|238910909\|ref\|ZP_04654746.1\| putative hemolysin [Salmonella enterica subsp. enterica serovar Tenn... gi\|16764626, gi\|... - gi\|16764626\|ref\|NP_460241.1\| putative hemolysin [Salmonella typhimurium LT2], gi\|16419791\|gb\|AAL2020... gi\|200390096, gi... - gi\|200390096\|ref\|ZP_03216707.1\| putative hemolysin [Salmonella enterica subsp. enterica serovar Virc... gi\|194735682, gi... - gi\|194735682\|ref\|YP_002114291.1\| putative hemolysin [Salmonella enterica subsp. enterica serovar Sch... gi\|197248100, gi... - gi\|197248100\|ref\|YP_002146766.1\| putative hemolysin [Salmonella enterica subsp. enterica serovar Ago... gi\|194447950, gi... - gi\|194447950\|ref\|YP_002045280.1\| putative hemolysin [Salmonella enterica subsp. enterica serovar Hei... gi\|194469569, gi... - gi\|194469569\|ref\|ZP_03075553.1\| putative hemolysin [Salmonella enterica subsp. enterica serovar Kent... gi\|205347297, gi... - gi\|205347297\|gb\|EDZ33928.1\| putative hemolysin [Salmonella enterica subsp. enterica serovar Hadar st... gi\|194446266, gi... - gi\|194446266\|ref\|YP_002040530.1\| putative hemolysin [Salmonella enterica subsp. enterica serovar New... gi\|168238932, gi... - gi\|197288268\|gb\|EDY27653.1\| putative hemolysin [Salmonella enterica subsp. enterica serovar Schwarze... gi\|168244371, gi... - gi\|205336720\|gb\|EDZ23484.1\| putative hemolysin [Salmonella enterica subsp. enterica serovar Heidelbe... gi\|205329695, gi... - gi\|205329695\|gb\|EDZ16459.1\| putative hemolysin [Salmonella enterica subsp. enterica serovar 4,[5],12... gi\|205332655, gi... - gi\|205332655\|gb\|EDZ19419.1\| putative hemolysin [Salmonella enterica subsp. enterica serovar Kentucky... gi\|205322958, gi... - gi\|205322958\|gb\|EDZ10797.1\| putative hemolysin [Salmonella enterica subsp. enterica serovar Saintpau... gi\|62127489, gi\|... - gi\|62179856\|ref\|YP_216273.1\| putative hemolysin [Salmonella enterica subsp. enterica serovar Cholera...	2.0E-29	[1..83]	[1..83]
gi\|56127995, gi\|... - gi\|56413738\|ref\|YP_150813.1\| hypothetical protein SPA1569 [Salmonella enterica subsp. enterica serov... gi\|197362660, gi... - gi\|197362660\|ref\|YP_002142297.1\| hypothetical protein SSPA1458 [Salmonella enterica subsp. enterica ...	2.0E-29	[1..83]	[1..83]
YOAF_ECOLI - Hypothetical protein yoaF - Escherichia coli EG14304 - DUF333 family outer membrane lipoprotein / Novel verified lipoprotein, function unknown YOAF_ECOL6 - Uncharacterized protein yoaF OS=Escherichia coli O6 GN=yoaF PE=4 SV=1 gi\|170081449, gi... - gi\|170081449\|ref\|YP_001730769.1\| outer membrane protein [Escherichia coli str. K-12 substr. DH10B], ... gi\|209919155, gi... - gi\|209919155\|ref\|YP_002293239.1\| hypothetical protein ECSE_1964 [Escherichia coli SE11], gi\|20991241... gi\|218558660, gi... - gi\|218558660\|ref\|YP_002391573.1\| conserved hypothetical protein; putative outer membrane protein [Es... gi\|218427297, gi... - gi\|218689733\|ref\|YP_002397945.1\| conserved hypothetical protein; putative outer membrane protein [Es... gi\|75236742, gi\|... - gi\|75236742\|ref\|ZP_00720813.1\| COG3042: Putative hemolysin [Escherichia coli E110019], gi\|193068993\|... gi\|190900972, gi... - gi\|75227724\|ref\|ZP_00714456.1\| COG3042: Putative hemolysin [Escherichia coli B7A], gi\|191169008\|ref\|... gi\|157066935, gi... - gi\|75195859\|ref\|ZP_00705929.1\| COG3042: Putative hemolysin [Escherichia coli HS], gi\|157161255\|ref\|Y... gi\|238901007, gi... - gi\|238901007\|ref\|YP_002926803.1\| conserved outer membrane protein [Escherichia coli BW2952], gi\|2388... gi\|237705744, gi... - gi\|237705744\|ref\|ZP_04536225.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|91211011, gi\|... - gi\|91211011\|ref\|YP_540997.1\| hypothetical protein UTI89_C1990 [Escherichia coli UTI89], gi\|91072585\|... gi\|227837352, gi... - gi\|227885779\|ref\|ZP_04003584.1\| hemolysin [Escherichia coli 83972], gi\|227837352\|gb\|EEJ47818.1\| hemo... gi\|110343506, gi... - gi\|110641914\|ref\|YP_669644.1\| hypothetical protein ECP_1740 [Escherichia coli 536], gi\|110343506\|gb\|... gi\|218699639, gi... - gi\|218699639\|ref\|YP_002407268.1\| conserved hypothetical protein; putative outer membrane protein [Es... YOAF_ECOL6 - Uncharacterized protein YoaF OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yoaF ... YOAF_SHIFL - Uncharacterized protein YoaF OS=Shigella flexneri GN=yoaF PE=4 SV=1 gi\|30062948, gi\|... - gi\|30062948\|ref\|NP_837119.1\| hypothetical protein S1546 [Shigella flexneri 2a str. 2457T], gi\|300411... gi\|85675124, gi\|... - gi\|89108632\|ref\|AP_002412.1\| conserved outer membrane protein [Escherichia coli str. K-12 substr. W3... gi\|24051747, gi\|... - gi\|24112814\|ref\|NP_707324.1\| hypothetical protein SF1431 [Shigella flexneri 2a str. 301], gi\|2405174... gi\|191171751, gi... - gi\|75241334\|ref\|ZP_00725185.1\| COG3042: Putative hemolysin [Escherichia coli F11], gi\|191171751\|ref\|... EG14304 - DUF333 family outer membrane lipoprotein / Novel verified lipoprotein, function unknown	2.0E-26	[1..83]	[1..84]
gi\|194421424, gi... - gi\|83584977\|ref\|ZP_00923632.1\| COG3042: Putative hemolysin [Escherichia coli 101-1], gi\|194439603\|re... gi\|253977946, gi... - gi\|254288639\|ref\|YP_003054387.1\| conserved outer membrane protein [Escherichia coli BL21(DE3)], gi\|2... gi\|251785240, gi... - gi\|251785240\|ref\|YP_002999544.1\| hypothetical protein B21_01750 [Escherichia coli BL21], gi\|24237751... gi\|81245220, gi\|... - gi\|82543809\|ref\|YP_407756.1\| hypothetical protein SBO_1300 [Shigella boydii Sb227], gi\|81245220\|gb\|A... gi\|253973752, gi... - gi\|254161851\|ref\|YP_003044959.1\| conserved outer membrane protein [Escherichia coli B str. REL606], ... gi\|75177282, gi\|... - gi\|75177282\|ref\|ZP_00697371.1\| COG3042: Putative hemolysin [Shigella boydii BS512], gi\|187731316\|ref... gi\|75513711, gi\|... - gi\|75513711\|ref\|ZP_00736087.1\| COG3042: Putative hemolysin [Escherichia coli 53638], gi\|188493617\|re...	3.0E-26	[1..83]	[1..84]
gi\|81241102, gi\|... - gi\|82776954\|ref\|YP_403303.1\| hypothetical protein SDY_1691 [Shigella dysenteriae Sd197], gi\|81241102...	4.0E-26	[1..83]	[1..84]
gi\|75255312, gi\|... - gi\|75255312\|ref\|ZP_00727145.1\| COG3042: Putative hemolysin [Escherichia coli E22], gi\|193066589\|ref\|... gi\|75208200, gi\|... - gi\|75208200\|ref\|ZP_00708572.1\| COG3042: Putative hemolysin [Escherichia coli B171], gi\|194430493\|ref...	6.0E-26	[1..83]	[1..84]
gi\|194433462, gi... - gi\|83569597\|ref\|ZP_00921048.1\| COG3042: Putative hemolysin [Shigella dysenteriae 1012], gi\|194433462...	7.0E-26	[1..83]	[1..84]
gi\|188016268, gi... - gi\|188016268\|gb\|EDU54390.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4113], gi\|16874937... gi\|187769371, gi... - gi\|187769371\|gb\|EDU33215.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4196], gi\|16877489... gi\|168770763, gi... - gi\|189360336\|gb\|EDU78755.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4486], gi\|16877076... gi\|189365709, gi... - gi\|189365709\|gb\|EDU84125.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4501], gi\|16876426... gi\|189355009, gi... - gi\|189355009\|gb\|EDU73428.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4401], gi\|16875810... gi\|15831756, gi\|... - gi\|15831756\|ref\|NP_310529.1\| hypothetical protein ECs2502 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|25496391, gi\|... - pir\|\|B85790 hypothetical protein yoaF [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|12515830, gi\|... - gi\|15802207\|ref\|NP_288229.1\| hypothetical protein Z2835 [Escherichia coli O157:H7 EDL933], gi\|125158... gi\|15831756, gi\|... - gi\|15831756\|ref\|NP_310529.1\| hypothetical protein ECs2502 [Escherichia coli O157:H7], gi\|13361969\|db... gi\|217328677, gi... - gi\|217328677\|ref\|ZP_03444758.1\| putative lipoprotein [Escherichia coli O157:H7 str. TW14588], gi\|217... gi\|195937481 - gi\|195937481\|ref\|ZP_03082863.1\| hypothetical protein EscherichcoliO157_13697 [Escherichia coli O157:... gi\|189376752, gi... - gi\|189376752\|gb\|EDU95168.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC508], gi\|168801046... gi\|189371933, gi... - gi\|189371933\|gb\|EDU90349.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC869], gi\|168788203... gi\|189000253, gi... - gi\|189000253\|gb\|EDU69239.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4076], gi\|16878222... gi\|209398179, gi... - gi\|209398179\|ref\|YP_002270868.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4115], gi\|209... gi\|208741278, gi... - gi\|208821155\|ref\|ZP_03261475.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4042], gi\|2087... gi\|208731144, gi... - gi\|208816801\|ref\|ZP_03257921.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4045], gi\|2087... gi\|208724936, gi... - gi\|208810420\|ref\|ZP_03252296.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4206], gi\|2087... gi\|254592815, gi... - gi\|254793415\|ref\|YP_003078252.1\| conserved outer membrane protein [Escherichia coli O157:H7 str. TW1...	8.0E-26	[1..83]	[1..84]
gi\|74311895, gi\|... - gi\|74311895\|ref\|YP_310314.1\| hypothetical protein SSON_1368 [Shigella sonnei Ss046], gi\|73855372\|gb\|...	1.0E-25	[1..83]	[1..84]
gi\|75190822, gi\|... - gi\|75190822\|ref\|ZP_00704089.1\| COG3042: Putative hemolysin [Escherichia coli E24377A], gi\|157156904\|... gi\|218554361, gi... - gi\|218554361\|ref\|YP_002387274.1\| conserved hypothetical protein; putative outer membrane protein [Es...	1.0E-25	[1..83]	[1..84]

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Predicted Domain #1

Region A:
Residues: [1-83]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFTWIALPG VLLLSACSSS QPNAPRPPRI GMPNPAAVYC EQQGGTLMPV QTPQGVRSDC  60
   61 KLPNGEIIDE WALWRREHPD TKK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	23.638272
Match:	PF03891.6
Description:	No description for PF03891.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits