YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|168264745, gi...
Organism:	Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066
Length:	187 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|168264745, gi....

Description	E-value	Query Range	Subject Range
gi\|62127220, gi\|... - gi\|62179587\|ref\|YP_216004.1\| putative outer membrane protein [Salmonella enterica subsp. enterica se...	8.0E-48	[1..187]	[1..187]
gi\|170020647, gi... - gi\|170020647\|ref\|YP_001725601.1\| hypothetical protein EcolC_2644 [Escherichia coli ATCC 8739], gi\|16... EG13719 - DUF330 family putative lipoprotein / Paraquat-inducible DUF330 family predicted lipoprotein; SoxRS-r... gi\|169888445, gi... - gi\|170080610\|ref\|YP_001729930.1\| hypothetical protein ECDH10B_1022 [Escherichia coli str. K-12 subst... gi\|4062520, gi\|1... - dbj\|BAA35710.1\| ORF_ID:o222#5 [Escherichia coli], gi\|150387816\|sp\|P0AB10.2\|YMBA_ECOLI RecName: Full=... gi\|24112365, gi\|... - gi\|24112365\|ref\|NP_706875.1\| hypothetical protein SF0953 [Shigella flexneri 2a str. 301], gi\|2405123... gi\|30040735, gi\|... - gi\|30062489\|ref\|NP_836660.1\| hypothetical protein S1018 [Shigella flexneri 2a str. 2457T], gi\|300407... YMBA_SHIFL - Uncharacterized lipoprotein YmbA OS=Shigella flexneri GN=ymbA PE=3 SV=2 gi\|124499389, gi... - gi\|124530102\|ref\|ZP_01700872.1\| protein of unknown function DUF330 [Escherichia coli B], gi\|12449938... EG13719 - DUF330 family putative lipoprotein / Paraquat-inducible DUF330 family predicted lipoprotein; SoxRS-r... gi\|75510995, gi\|... - gi\|75510995\|ref\|ZP_00733749.1\| COG3009: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|238900210, gi... - gi\|238900210\|ref\|YP_002926006.1\| hypothetical protein BWG_0804 [Escherichia coli BW2952], gi\|2388604... gi\|253774019, gi... - gi\|253774019\|ref\|YP_003036850.1\| protein of unknown function DUF330 [Escherichia coli BL21(DE3)], gi... gi\|83584440 - gi\|83584440\|ref\|ZP_00923133.1\| COG3009: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|157078613, gi... - gi\|75190021\|ref\|ZP_00703288.1\| COG3009: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75195142, gi\|... - gi\|75195142\|ref\|ZP_00705212.1\| COG3009: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|110804968, gi... - gi\|110804968\|ref\|YP_688488.1\| hypothetical protein SFV_0961 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|193071862, gi... - gi\|75214450\|ref\|ZP_00713054.1\| COG3009: Uncharacterized protein conserved in bacteria [Escherichia c...	8.0E-46	[1..187]	[1..187]
gi\|209918204, gi... - gi\|209918204\|ref\|YP_002292288.1\| hypothetical protein ECSE_1013 [Escherichia coli SE11], gi\|20991146... gi\|75226633 - gi\|75226633\|ref\|ZP_00713636.1\| COG3009: Uncharacterized protein conserved in bacteria [Escherichia c...	9.0E-46	[1..187]	[1..187]
gi\|193064667, gi... - gi\|75257330\|ref\|ZP_00728846.1\| COG3009: Uncharacterized protein conserved in bacteria [Escherichia c...	1.0E-45	[1..187]	[1..187]
gi\|187427223, gi... - gi\|75178234\|ref\|ZP_00698288.1\| COG3009: Uncharacterized protein conserved in bacteria [Shigella boyd...	2.0E-45	[1..187]	[1..187]
gi\|194435233, gi... - gi\|83568924\|ref\|ZP_00920392.1\| COG3009: Uncharacterized protein conserved in bacteria [Shigella dyse...	2.0E-45	[1..187]	[1..187]
gi\|191172142, gi... - gi\|75241020\|ref\|ZP_00724909.1\| COG3009: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|117623163, gi... - gi\|117623163\|ref\|YP_852076.1\| hypothetical protein APECO1_58 [Escherichia coli APEC O1], gi\|11551228... gi\|226898275, gi... - gi\|237707065\|ref\|ZP_04537546.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|215264142, gi... - gi\|215486070\|ref\|YP_002328501.1\| hypothetical protein E2348C_0938 [Escherichia coli O127:H6 str. E23... gi\|91071621, gi\|... - gi\|91210047\|ref\|YP_540033.1\| hypothetical protein UTI89_C1017 [Escherichia coli UTI89], gi\|91071621\|... gi\|110641141, gi... - gi\|110641141\|ref\|YP_668871.1\| hypothetical protein ECP_0957 [Escherichia coli 536], gi\|110342733\|gb\|...	3.0E-45	[1..187]	[1..187]
gi\|26246973, gi\|... - gi\|26246973\|ref\|NP_753013.1\| hypothetical protein c1088 [Escherichia coli CFT073], gi\|26107373\|gb\|AA...	1.0E-43	[1..187]	[1..187]
gi\|77974882 - gi\|77974882\|ref\|ZP_00830420.1\| COG3009: Uncharacterized protein conserved in bacteria [Yersinia fred...	1.0E-42	[1..186]	[1..185]
gi\|77956756 - gi\|77956756\|ref\|ZP_00820836.1\| COG3009: Uncharacterized protein conserved in bacteria [Yersinia berc...	3.0E-42	[1..186]	[1..185]

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Predicted Domain #1

Region A:
Residues: [1-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKWLVVIMA FWLASCSSGG ENKSYYQLPI AQSGVQSTAS QGNRLLWVEQ VSVPDYLAGN  60
   61 GVVYQTSDVQ YVIANNNLWA SPLDQQLRNT LVANLSARLP GWVVASQPLG TTQDTLNVTV 120
  121 TGFHGRYDGK VIVSGEWLLN HNGQLIKRPF HIEASQQKDG YDEMVKVLAS AWSQEAAAIA 180
  181 DEIKRLP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.39794
Match:	2iqiA
Description:	No description for 2iqiA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits