YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|199605859, gi...
Organism:	Salmonella enterica subsp. enterica serovar Virchow str. SL491
Length:	207 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|199605859, gi....

Description	E-value	Query Range	Subject Range
gi\|224470196, gi... - gi\|224585668\|ref\|YP_002639467.1\| glucose-inhibited division protein B [Salmonella enterica subsp. en... gi\|213579758 - gi\|213579758\|ref\|ZP_03361584.1\| glucose-inhibited division protein B [Salmonella enterica subsp. ent... lcl\|NC_016856.1_... - [gene=gidB] [protein=glucose-inhibited division protein B] [protein_id=YP_005240142.1] [location=com... gi\|213026622 - gi\|213026622\|ref\|ZP_03341069.1\| glucose-inhibited division protein B [Salmonella enterica subsp. ent... gi\|39546379 - gi\|39546379\|ref\|NP_462772.2\| glucose-inhibited division protein B [Salmonella typhimurium LT2] gi\|206710899, gi... - gi\|207859096\|ref\|YP_002245747.1\| 16S rRNA methyltransferase GidB [Salmonella enterica subsp. enteric...	7.0E-37	[2..207]	[4..209]
RSMG_PHOPR - Ribosomal RNA small subunit methyltransferase G OS=Photobacterium profundum (strain SS9) GN=rsmG PE=... RSMG_PHOPR, GIDB... - Ribosomal RNA small subunit methyltransferase G OS=Photobacterium profundum GN=rsmG PE=3 SV=1, Methy...	1.0E-36	[1..206]	[1..206]
gi\|89074718, gi\|... - gi\|89074718\|ref\|ZP_01161176.1\| glucose-inhibited division protein B [Photobacterium sp. SKA34], gi\|8...	4.0E-36	[1..205]	[1..205]
gi\|90437662, gi\|... - gi\|90581141\|ref\|ZP_01236940.1\| glucose-inhibited division protein B [Vibrio angustum S14], gi\|904376...	5.0E-36	[1..205]	[1..205]
RSMG_ECO55 - Ribosomal RNA small subunit methyltransferase G OS=Escherichia coli (strain 55989 / EAEC) GN=rsmG PE... RSMG_ECO81 - Ribosomal RNA small subunit methyltransferase G OS=Escherichia coli O81 (strain ED1a) GN=rsmG PE=3 S... gi\|227883962, gi... - gi\|227883962\|ref\|ZP_04001767.1\| glucose-inhibited division protein B [Escherichia coli 83972], gi\|22... gi\|237703541, gi... - gi\|237703541\|ref\|ZP_04534022.1\| ribosomal RNA small subunit methyltransferase G [Escherichia sp. 3_2... RSMG_ECOBW - Ribosomal RNA small subunit methyltransferase G OS=Escherichia coli (strain K12 / MC4100 / BW2952) G... gi\|242379278, gi... - gi\|251787005\|ref\|YP_003001309.1\| hypothetical protein B21_03568 [Escherichia coli BL21], gi\|24237927... gi\|254290442, gi... - gi\|254290442\|ref\|YP_003056190.1\| glucose-inhibited division protein [Escherichia coli BL21(DE3)], gi... gi\|226838924, gi... - gi\|254038959\|ref\|ZP_04873011.1\| methyltransferase gidB [Escherichia sp. 1_1_43], gi\|226838924\|gb\|EEH... gi\|254795746, gi... - gi\|254795746\|ref\|YP_003080583.1\| methyltransferase, SAM-dependent methyltransferase, glucose-inhibit... RSMG_ECOLC - Ribosomal RNA small subunit methyltransferase G OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / C... gi\|168748530, gi... - gi\|188016845\|gb\|EDU54967.1\| 16S rRNA methyltransferase GidB [Escherichia coli O157:H7 str. EC4113], ... gi\|208738796, gi... - gi\|208818673\|ref\|ZP_03258993.1\| 16S rRNA methyltransferase GidB [Escherichia coli O157:H7 str. EC404... gi\|208812418, gi... - gi\|208812418\|ref\|ZP_03253747.1\| 16S rRNA methyltransferase GidB [Escherichia coli O157:H7 str. EC404... RSMG_ECOSE - Ribosomal RNA small subunit methyltransferase G OS=Escherichia coli (strain SE11) GN=rsmG PE=3 SV=1 RSMG_ECO5E - Ribosomal RNA small subunit methyltransferase G OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) G... gi\|217324250, gi... - gi\|217324250\|ref\|ZP_03440334.1\| 16S rRNA methyltransferase GidB [Escherichia coli O157:H7 str. TW145... RSMG_ECO27 - Ribosomal RNA small subunit methyltransferase G OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC)... RSMG_ECO45 - Ribosomal RNA small subunit methyltransferase G OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=r... RSMG_ECO8A - Ribosomal RNA small subunit methyltransferase G OS=Escherichia coli O8 (strain IAI1) GN=rsmG PE=3 SV... gi\|189364706, gi... - gi\|189364706\|gb\|EDU83125.1\| 16S rRNA methyltransferase GidB [Escherichia coli O157:H7 str. EC4486], ... gi\|168753642, gi... - gi\|189358956\|gb\|EDU77375.1\| 16S rRNA methyltransferase GidB [Escherichia coli O157:H7 str. EC4401], ... gi\|189002346, gi... - gi\|189002346\|gb\|EDU71332.1\| 16S rRNA methyltransferase GidB [Escherichia coli O157:H7 str. EC4076], ... gi\|168772211, gi... - gi\|187771511\|gb\|EDU35355.1\| 16S rRNA methyltransferase GidB [Escherichia coli O157:H7 str. EC4196], ... RSMG_ECODH - Ribosomal RNA small subunit methyltransferase G OS=Escherichia coli (strain K12 / DH10B) GN=rsmG PE=... gi\|189373248, gi... - gi\|189373248\|gb\|EDU91664.1\| 16S rRNA methyltransferase GidB [Escherichia coli O157:H7 str. EC869], g... RSMG_ECOL6, GIDB... - Ribosomal RNA small subunit methyltransferase G OS=Escherichia coli O6 GN=rsmG PE=3 SV=1, Methyltran... gi\|208728641, gi... - gi\|208808840\|ref\|ZP_03251177.1\| 16S rRNA methyltransferase GidB [Escherichia coli O157:H7 str. EC420... GIDB_ECOLI - Methyltransferase gidB (EC 2.1.-.-) (Glucose-inhibited division protein B) - Escherichia coli gi\|195936367 - gi\|195936367\|ref\|ZP_03081749.1\| glucose-inhibited division protein B [Escherichia coli O157:H7 str. ... RSMG_ECOL6 - Ribosomal RNA small subunit methyltransferase G OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 7009... gi\|30043216, gi\|... - gi\|30064955\|ref\|NP_839126.1\| glucose-inhibited division protein B [Shigella flexneri 2a str. 2457T],... RSMG_ECO57 - Ribosomal RNA small subunit methyltransferase G OS=Escherichia coli O157:H7 GN=rsmG PE=3 SV=1 EG10376 - 16S rRNA m(7)G527 methyltransferase, SAM-dependent; glucose-inhibited cell-division protein / 16S rR... gi\|12518597, gi\|... - gi\|15804340\|ref\|NP_290379.1\| glucose-inhibited division protein B [Escherichia coli O157:H7 EDL933],... RSMG_SHIBS - Ribosomal RNA small subunit methyltransferase G OS=Shigella boydii serotype 4 (strain Sb227) GN=rsmG... RSMG_ECOUT - Ribosomal RNA small subunit methyltransferase G OS=Escherichia coli (strain UTI89 / UPEC) GN=rsmG PE... gi\|85676298, gi\|... - gi\|89110267\|ref\|AP_004047.1\| methyltransferase, glucose-inhibited cell-division protein [Escherichia... gi\|15833936, gi\|... - gi\|15833936\|ref\|NP_312709.1\| 16S rRNA methyltransferase GidB [Escherichia coli O157:H7 str. Sakai], ... gi\|75514194, gi\|... - gi\|75514194\|ref\|ZP_00736502.1\| COG0357: Predicted S-adenosylmethionine-dependent methyltransferase i... RSMG_ECOL5 - Ribosomal RNA small subunit methyltransferase G OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) G... RSMG_SHISS - Ribosomal RNA small subunit methyltransferase G OS=Shigella sonnei (strain Ss046) GN=rsmG PE=3 SV=1 RSMG_SHIF8 - Ribosomal RNA small subunit methyltransferase G OS=Shigella flexneri serotype 5b (strain 8401) GN=rs... RSMG_ECOHS - Ribosomal RNA small subunit methyltransferase G OS=Escherichia coli O9:H4 (strain HS) GN=rsmG PE=3 S... gi\|194413862, gi... - gi\|75210650\|ref\|ZP_00710791.1\| COG0357: Predicted S-adenosylmethionine-dependent methyltransferase i... gi\|194425155, gi... - gi\|83588395\|ref\|ZP_00927019.1\| COG0357: Predicted S-adenosylmethionine-dependent methyltransferase i... RSMG_SHIB3 - Ribosomal RNA small subunit methyltransferase G OS=Shigella boydii serotype 18 (strain CDC 3083-94 /... gi\|191170432, gi... - gi\|75242472\|ref\|ZP_00726216.1\| COG0357: Predicted S-adenosylmethionine-dependent methyltransferase i... gi\|192930543, gi... - gi\|75258279\|ref\|ZP_00729727.1\| COG0357: Predicted S-adenosylmethionine-dependent methyltransferase i... sp\|B7UMK5\|RSMG_ECO27 - Ribosomal RNA small subunit methyltransferase G OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC)... gi\|192955070, gi... - gi\|75214823\|ref\|ZP_00713308.1\| COG0357: Predicted S-adenosylmethionine-dependent methyltransferase i... gi\|75226621, gi\|... - gi\|75226621\|ref\|ZP_00713630.1\| COG0357: Predicted S-adenosylmethionine-dependent methyltransferase i... EG10376 - 16S rRNA m(7)G527 methyltransferase, SAM-dependent; glucose-inhibited cell-division protein / 16S rR... RSMG_ECOK1 - Ribosomal RNA small subunit methyltransferase G OS=Escherichia coli O1:K1 / APEC GN=rsmG PE=3 SV=1 gi\|124530046, gi... - gi\|124530046\|ref\|ZP_01700829.1\| methyltransferase GidB [Escherichia coli B], gi\|124499451\|gb\|EAY4693...	5.0E-36	[1..207]	[1..207]
gi\|90325213, gi\|... - gi\|90413744\|ref\|ZP_01221732.1\| glucose-inhibited division protein B [Photobacterium profundum 3TCK],...	6.0E-36	[1..205]	[1..205]
RSMG_SHIDS - Ribosomal RNA small subunit methyltransferase G OS=Shigella dysenteriae serotype 1 (strain Sd197) GN...	7.0E-36	[1..207]	[1..207]
RSMG_SHIFL - Ribosomal RNA small subunit methyltransferase G OS=Shigella flexneri GN=rsmG PE=3 SV=1 gi\|24054303, gi\|... - gi\|24115043\|ref\|NP_709553.1\| glucose-inhibited division protein B [Shigella flexneri 2a str. 301], g...	7.0E-36	[1..207]	[1..207]
gi\|165926220, gi... - gi\|165926220\|ref\|ZP_02222052.1\| methyltransferase GidB [Yersinia pestis biovar Orientalis str. F1991... gi\|165991520, gi... - gi\|166009598\|ref\|ZP_02230496.1\| methyltransferase GidB [Yersinia pestis biovar Antiqua str. E1979001... gi\|166205654, gi... - gi\|166213356\|ref\|ZP_02239391.1\| methyltransferase GidB [Yersinia pestis biovar Antiqua str. B4200300... gi\|167401525, gi... - gi\|167401525\|ref\|ZP_02307019.1\| methyltransferase GidB [Yersinia pestis biovar Antiqua str. UG05-045... RSMG_YERPG - Ribosomal RNA small subunit methyltransferase G OS=Yersinia pestis bv. Antiqua (strain Angola) GN=rs... RSMG_YERP3 - Ribosomal RNA small subunit methyltransferase G OS=Yersinia pseudotuberculosis serotype O:1b (strain... GIDB_YERPS, RSMG... - Ribosomal RNA small subunit methyltransferase G OS=Yersinia pseudotuberculosis GN=rsmG PE=3 SV=1, Me... gi\|149290345, gi... - gi\|150260937\|ref\|ZP_01917665.1\| glucose inhibited division protein B [Yersinia pestis CA88-4125], gi... RSMG_YERPP - Ribosomal RNA small subunit methyltransferase G OS=Yersinia pestis (strain Pestoides F) GN=rsmG PE=3... RSMG_YERPA - Ribosomal RNA small subunit methyltransferase G OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=r... RSMG_YERPN - Ribosomal RNA small subunit methyltransferase G OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=... RSMG_YERPS - Ribosomal RNA small subunit methyltransferase G OS=Yersinia pseudotuberculosis serotype I (strain IP... gi\|218931105, gi... - gi\|218931105\|ref\|YP_002348980.1\| 16S rRNA methyltransferase GidB [Yersinia pestis CO92], gi\|16124237... gi\|89104516, gi\|... - gi\|89104516\|ref\|ZP_01177057.1\| COG0357: Predicted S-adenosylmethionine-dependent methyltransferase i... gi\|229839839, gi... - gi\|229839839\|ref\|ZP_04459998.1\| methyltransferase, SAM-dependent methyltransferase, glucose-inhibite... gi\|167422855, gi... - gi\|167422855\|ref\|ZP_02314608.1\| methyltransferase GidB [Yersinia pestis biovar Orientalis str. MG05-... gi\|229691262, gi... - gi\|229841923\|ref\|ZP_04462079.1\| methyltransferase, SAM-dependent methyltransferase, glucose-inhibite... gi\|167425517, gi... - gi\|167425517\|ref\|ZP_02317270.1\| methyltransferase GidB [Yersinia pestis biovar Mediaevalis str. K197... gi\|229896800, gi... - gi\|229896800\|ref\|ZP_04511963.1\| methyltransferase, SAM-dependent methyltransferase, glucose-inhibite... gi\|167468639 - gi\|167468639\|ref\|ZP_02333343.1\| glucose-inhibited division protein B [Yersinia pestis FV-1] RSMG_YERPB - Ribosomal RNA small subunit methyltransferase G OS=Yersinia pseudotuberculosis serotype IB (strain P... RSMG_YERPE - Ribosomal RNA small subunit methyltransferase G OS=Yersinia pestis GN=rsmG PE=3 SV=1	9.0E-36	[1..203]	[1..204]
gi\|77961824, gi\|... - gi\|77961824\|ref\|ZP_00825654.1\| COG0357: Predicted S-adenosylmethionine-dependent methyltransferase i...	2.0E-35	[1..202]	[1..203]

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Predicted Domain #1

Region A:
Residues: [1-207]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNKLSRLLA DAGISLTDHQ KTLLVAYVDM LHKWNKAYNL TSVRDPNEML VRHILDSIVV  60
   61 APYLQGQRFI DVGTGPGLPG IPLAIVLPDA HFTLLDSLGK RVRFLRQVQH ELKLENITPV 120
  121 QSRVEAYPSE PPFDGVISRA FASLNDMVSW CHHLPGEKGR FYALKGQLPG DEIASLPDNF 180
  181 SVESVEKLRV PQLEGERHLV IIKSNKV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.39794
Match:	1jsxA
Description:	Glucose-inhibited division protein B (GidB)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
methyltransferase activity	4.15445027778357	bayes_pls_golite062009
rRNA methyltransferase activity	4.09362182773099	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	4.07153733729662	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	3.39429041855776	bayes_pls_golite062009
RNA methyltransferase activity	3.07428840534971	bayes_pls_golite062009
N-methyltransferase activity	3.0539218951403	bayes_pls_golite062009
protein methyltransferase activity	3.01384869242051	bayes_pls_golite062009
transferase activity	2.22303238506686	bayes_pls_golite062009
histone methyltransferase activity	1.90505369820945	bayes_pls_golite062009
rRNA (adenine) methyltransferase activity	1.83964463328968	bayes_pls_golite062009
rRNA (adenine-N6,N6-)-dimethyltransferase activity	1.75675289134467	bayes_pls_golite062009
DNA-methyltransferase activity	1.63765148226572	bayes_pls_golite062009
arginine N-methyltransferase activity	1.6030970825293	bayes_pls_golite062009
protein-arginine N-methyltransferase activity	1.6030970825293	bayes_pls_golite062009
catalytic activity	1.25333584501255	bayes_pls_golite062009
tRNA methyltransferase activity	1.12859857407629	bayes_pls_golite062009
rRNA (guanine) methyltransferase activity	1.10713374933008	bayes_pls_golite062009
histone-arginine N-methyltransferase activity	1.05897361334523	bayes_pls_golite062009
site-specific DNA-methyltransferase (adenine-specific) activity	0.703178429468566	bayes_pls_golite062009
protein-arginine omega-N monomethyltransferase activity	0.639377525568296	bayes_pls_golite062009
O-methyltransferase activity	0.250946859465502	bayes_pls_golite062009
protein-arginine omega-N asymmetric methyltransferase activity	0.130104080746388	bayes_pls_golite062009
histone methyltransferase activity (H4-R3 specific)	0.130042730841119	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: